Protein–RNA interactions for Protein: Q96RI1

NR1H4, Bile acid receptor, humanhuman

Predicted RBP Predictions only

Length 486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NR1H4Q96RI1 LGR5-201ENST00000266674 4611 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
NR1H4Q96RI1 TMEM132C-201ENST00000435159 4947 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
NR1H4Q96RI1 GNPDA1-204ENST00000503794 2622 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
NR1H4Q96RI1 SLC16A1-201ENST00000369626 3910 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
NR1H4Q96RI1 RIOK3-203ENST00000577501 1904 ntAPPRIS ALT1 TSL 1 (best) BASIC14.24□□□□□ -0.13
NR1H4Q96RI1 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
NR1H4Q96RI1 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC14.24□□□□□ -0.13
NR1H4Q96RI1 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
NR1H4Q96RI1 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
NR1H4Q96RI1 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC14.24□□□□□ -0.13
NR1H4Q96RI1 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
NR1H4Q96RI1 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC14.24□□□□□ -0.13
NR1H4Q96RI1 FGFR3P6-201ENST00000457012 610 ntBASIC14.24□□□□□ -0.13
NR1H4Q96RI1 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC14.24□□□□□ -0.13
NR1H4Q96RI1 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
NR1H4Q96RI1 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC14.24□□□□□ -0.13
NR1H4Q96RI1 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC14.24□□□□□ -0.13
NR1H4Q96RI1 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC14.24□□□□□ -0.13
NR1H4Q96RI1 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC14.24□□□□□ -0.13
NR1H4Q96RI1 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC14.24□□□□□ -0.13
NR1H4Q96RI1 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC14.24□□□□□ -0.13
NR1H4Q96RI1 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC14.24□□□□□ -0.13
NR1H4Q96RI1 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC14.24□□□□□ -0.13
NR1H4Q96RI1 ABCC6-201ENST00000205557 5747 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
NR1H4Q96RI1 CAMK2B-217ENST00000457475 4142 ntTSL 5 BASIC14.24□□□□□ -0.13
NR1H4Q96RI1 ZMIZ2-206ENST00000441627 5089 ntAPPRIS P4 TSL 1 (best) BASIC14.24□□□□□ -0.13
NR1H4Q96RI1 YTHDF3-209ENST00000617200 5076 ntTSL 5 BASIC14.24□□□□□ -0.13
NR1H4Q96RI1 CCDC86-201ENST00000227520 1893 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
NR1H4Q96RI1 ADK-205ENST00000539909 1866 ntTSL 2 BASIC14.24□□□□□ -0.13
NR1H4Q96RI1 CCR7-201ENST00000246657 2173 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
NR1H4Q96RI1 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC14.24□□□□□ -0.13
NR1H4Q96RI1 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
NR1H4Q96RI1 MBP-208ENST00000397866 2145 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
NR1H4Q96RI1 ACIN1-204ENST00000397341 2738 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
NR1H4Q96RI1 TNN-202ENST00000621086 4234 ntTSL 5 BASIC14.24□□□□□ -0.13
NR1H4Q96RI1 MTMR3-204ENST00000401950 6018 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
NR1H4Q96RI1 TUBGCP3-201ENST00000261965 3899 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
NR1H4Q96RI1 BDKRB2-202ENST00000542454 6845 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
NR1H4Q96RI1 ERICH6-201ENST00000295910 2052 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
NR1H4Q96RI1 AGGF1P1-201ENST00000509500 2073 ntBASIC14.24□□□□□ -0.13
NR1H4Q96RI1 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
NR1H4Q96RI1 ITPR2-202ENST00000381340 11405 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
NR1H4Q96RI1 DIS3L2-205ENST00000409401 2048 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
NR1H4Q96RI1 CEACAM20-204ENST00000617951 2034 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
NR1H4Q96RI1 KIF1A-213ENST00000498729 9221 ntTSL 5 BASIC14.24□□□□□ -0.13
NR1H4Q96RI1 AMIGO3-201ENST00000320431 2862 ntAPPRIS P1 BASIC14.24□□□□□ -0.13
NR1H4Q96RI1 IFT88-202ENST00000351808 2856 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
NR1H4Q96RI1 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
NR1H4Q96RI1 EPN2-205ENST00000395626 2863 ntTSL 2 BASIC14.24□□□□□ -0.13
NR1H4Q96RI1 TRHDE-AS1-201ENST00000426250 3684 ntTSL 5 BASIC14.23□□□□□ -0.13
NR1H4Q96RI1 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
NR1H4Q96RI1 IKBKG-208ENST00000611176 1654 ntTSL 2 BASIC14.23□□□□□ -0.13
NR1H4Q96RI1 GUF1-201ENST00000281543 4449 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
NR1H4Q96RI1 CDH3-201ENST00000264012 4929 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
NR1H4Q96RI1 SYNGR1-203ENST00000328933 4391 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
NR1H4Q96RI1 AL121827.1-201ENST00000370257 3264 ntTSL 2 BASIC14.23□□□□□ -0.13
NR1H4Q96RI1 SLC45A1-201ENST00000289877 2401 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
NR1H4Q96RI1 EXOC3-201ENST00000315013 2682 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
NR1H4Q96RI1 PPME1-201ENST00000328257 2677 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
NR1H4Q96RI1 TMEM87A-201ENST00000307216 1598 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
NR1H4Q96RI1 CCT6B-201ENST00000314144 1838 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
NR1H4Q96RI1 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
NR1H4Q96RI1 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
NR1H4Q96RI1 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC14.23□□□□□ -0.13
NR1H4Q96RI1 AC004987.2-201ENST00000395959 1148 ntBASIC14.23□□□□□ -0.13
NR1H4Q96RI1 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC14.23□□□□□ -0.13
NR1H4Q96RI1 TSPY19P-201ENST00000418461 509 ntBASIC14.23□□□□□ -0.13
NR1H4Q96RI1 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC14.23□□□□□ -0.13
NR1H4Q96RI1 TSPY18P-201ENST00000441642 509 ntBASIC14.23□□□□□ -0.13
NR1H4Q96RI1 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC14.23□□□□□ -0.13
NR1H4Q96RI1 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
NR1H4Q96RI1 PHKG1P2-201ENST00000457537 863 ntBASIC14.23□□□□□ -0.13
NR1H4Q96RI1 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC14.23□□□□□ -0.13
NR1H4Q96RI1 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC14.23□□□□□ -0.13
NR1H4Q96RI1 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC14.23□□□□□ -0.13
NR1H4Q96RI1 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC14.23□□□□□ -0.13
NR1H4Q96RI1 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC14.23□□□□□ -0.13
NR1H4Q96RI1 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC14.23□□□□□ -0.13
NR1H4Q96RI1 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC14.23□□□□□ -0.13
NR1H4Q96RI1 AC004706.3-202ENST00000621574 984 ntBASIC14.23□□□□□ -0.13
NR1H4Q96RI1 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC14.23□□□□□ -0.13
NR1H4Q96RI1 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC14.23□□□□□ -0.13
NR1H4Q96RI1 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
NR1H4Q96RI1 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC14.23□□□□□ -0.13
NR1H4Q96RI1 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC14.23□□□□□ -0.13
NR1H4Q96RI1 DDC-207ENST00000444124 2041 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
NR1H4Q96RI1 PRRT3-203ENST00000412055 3761 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
NR1H4Q96RI1 MTUS1-204ENST00000381869 6256 ntTSL 5 BASIC14.23□□□□□ -0.13
NR1H4Q96RI1 MKL1-201ENST00000355630 4496 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
NR1H4Q96RI1 COL6A1-201ENST00000361866 4238 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
NR1H4Q96RI1 MAN2B2-202ENST00000504248 2968 ntTSL 2 BASIC14.23□□□□□ -0.13
NR1H4Q96RI1 PTH2R-201ENST00000272847 2713 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
NR1H4Q96RI1 MKLN1-203ENST00000421797 2460 ntTSL 2 BASIC14.23□□□□□ -0.13
NR1H4Q96RI1 NCF2-201ENST00000367535 2226 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
NR1H4Q96RI1 PIGT-203ENST00000372689 1971 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
NR1H4Q96RI1 MX1-218ENST00000619682 1980 ntTSL 5 BASIC14.23□□□□□ -0.13
NR1H4Q96RI1 CACNA1G-229ENST00000514181 6795 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
NR1H4Q96RI1 ADAM12-202ENST00000368679 7938 ntAPPRIS P4 TSL 1 (best) BASIC14.23□□□□□ -0.13
NR1H4Q96RI1 C3orf18-206ENST00000449241 2365 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
NR1H4Q96RI1 ARMCX1-201ENST00000372829 2141 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 34.7 ms