Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC18.02■□□□□ 0.48
CHMP4CQ96CF2 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CHMP4CQ96CF2 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC18.02■□□□□ 0.48
CHMP4CQ96CF2 AMT-204ENST00000427987 1646 ntTSL 5 BASIC18.02■□□□□ 0.48
CHMP4CQ96CF2 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CHMP4CQ96CF2 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CHMP4CQ96CF2 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CHMP4CQ96CF2 USP19-203ENST00000398892 4622 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.48
CHMP4CQ96CF2 ANK1-201ENST00000265709 6379 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
CHMP4CQ96CF2 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CHMP4CQ96CF2 EOMES-201ENST00000295743 3386 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CHMP4CQ96CF2 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CHMP4CQ96CF2 LARGE1-201ENST00000354992 4409 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CHMP4CQ96CF2 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC18.02■□□□□ 0.48
CHMP4CQ96CF2 PLAC9-201ENST00000372263 785 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.48
CHMP4CQ96CF2 ZG16B-201ENST00000382280 831 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.48
CHMP4CQ96CF2 AL645937.2-201ENST00000396808 931 ntBASIC18.02■□□□□ 0.48
CHMP4CQ96CF2 ZFAND2B-203ENST00000409206 1159 ntTSL 2 BASIC18.02■□□□□ 0.48
CHMP4CQ96CF2 USB1-202ENST00000423271 1217 ntTSL 2 BASIC18.02■□□□□ 0.48
CHMP4CQ96CF2 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CHMP4CQ96CF2 TMEM107-204ENST00000437139 747 ntAPPRIS ALT1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CHMP4CQ96CF2 ZNF589-204ENST00000440261 917 ntTSL 2 BASIC18.02■□□□□ 0.48
CHMP4CQ96CF2 SBF1P1-201ENST00000444527 5631 ntBASIC18.02■□□□□ 0.48
CHMP4CQ96CF2 UHRF1BP1-202ENST00000452449 4706 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.48
CHMP4CQ96CF2 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC18.02■□□□□ 0.48
CHMP4CQ96CF2 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.48
CHMP4CQ96CF2 AC125603.2-201ENST00000546835 876 ntTSL 3 BASIC18.02■□□□□ 0.48
CHMP4CQ96CF2 IL32-232ENST00000552356 623 ntAPPRIS ALT2 TSL 3 BASIC18.02■□□□□ 0.48
CHMP4CQ96CF2 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
CHMP4CQ96CF2 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC18.02■□□□□ 0.48
CHMP4CQ96CF2 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC18.02■□□□□ 0.48
CHMP4CQ96CF2 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC18.02■□□□□ 0.48
CHMP4CQ96CF2 RSPH6A-202ENST00000597055 2306 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
CHMP4CQ96CF2 DBF4-201ENST00000265728 3907 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CHMP4CQ96CF2 MYH6-202ENST00000405093 5941 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.47
CHMP4CQ96CF2 ACE3P-201ENST00000423435 1973 ntBASIC18.02■□□□□ 0.47
CHMP4CQ96CF2 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
CHMP4CQ96CF2 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.47
CHMP4CQ96CF2 PRR19-201ENST00000341747 1530 ntAPPRIS P2 TSL 5 BASIC18.02■□□□□ 0.47
CHMP4CQ96CF2 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
CHMP4CQ96CF2 UBE2I-201ENST00000325437 2832 ntAPPRIS P1 TSL 3 BASIC18.02■□□□□ 0.47
CHMP4CQ96CF2 NUP98-203ENST00000359171 7023 ntTSL 5 BASIC18.02■□□□□ 0.47
CHMP4CQ96CF2 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC18.02■□□□□ 0.47
CHMP4CQ96CF2 ZNF384-202ENST00000355772 2514 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
CHMP4CQ96CF2 ASTN2-201ENST00000288520 2356 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
CHMP4CQ96CF2 ZBTB32-202ENST00000392197 2068 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.47
CHMP4CQ96CF2 LRCH1-202ENST00000389797 3314 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
CHMP4CQ96CF2 SLC26A1-202ENST00000398516 3109 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CHMP4CQ96CF2 ZNF575-202ENST00000458714 2285 ntTSL 2 BASIC18.01■□□□□ 0.47
CHMP4CQ96CF2 IL17RD-201ENST00000296318 8720 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CHMP4CQ96CF2 DMPK-202ENST00000343373 3227 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CHMP4CQ96CF2 DDX55-201ENST00000238146 2654 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CHMP4CQ96CF2 LILRP2-201ENST00000413439 2127 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CHMP4CQ96CF2 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC18.01■□□□□ 0.47
CHMP4CQ96CF2 TBXAS1-208ENST00000448866 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CHMP4CQ96CF2 SPN-201ENST00000360121 6894 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
CHMP4CQ96CF2 KIAA1468-202ENST00000398130 6178 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CHMP4CQ96CF2 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CHMP4CQ96CF2 CENPO-202ENST00000380834 4386 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
CHMP4CQ96CF2 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CHMP4CQ96CF2 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC18.01■□□□□ 0.47
CHMP4CQ96CF2 RNU1-114P-201ENST00000365297 166 ntBASIC18.01■□□□□ 0.47
CHMP4CQ96CF2 PSORS1C3-201ENST00000412143 593 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CHMP4CQ96CF2 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC18.01■□□□□ 0.47
CHMP4CQ96CF2 CR769775.1-201ENST00000443347 931 ntTSL 3 BASIC18.01■□□□□ 0.47
CHMP4CQ96CF2 AL355864.2-201ENST00000447420 863 ntBASIC18.01■□□□□ 0.47
CHMP4CQ96CF2 AC104989.1-201ENST00000519711 778 ntBASIC18.01■□□□□ 0.47
CHMP4CQ96CF2 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC18.01■□□□□ 0.47
CHMP4CQ96CF2 AP001063.1-201ENST00000568332 529 ntBASIC18.01■□□□□ 0.47
CHMP4CQ96CF2 AL022328.1-201ENST00000610050 478 ntBASIC18.01■□□□□ 0.47
CHMP4CQ96CF2 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CHMP4CQ96CF2 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CHMP4CQ96CF2 AC138517.2-201ENST00000637503 2594 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
CHMP4CQ96CF2 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
CHMP4CQ96CF2 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CHMP4CQ96CF2 KBTBD12-202ENST00000405109 5727 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
CHMP4CQ96CF2 ADCYAP1R1-204ENST00000409489 1761 ntTSL 5 BASIC18.01■□□□□ 0.47
CHMP4CQ96CF2 AC004922.1-201ENST00000638617 2430 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
CHMP4CQ96CF2 FAM86B1-216ENST00000533852 2043 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
CHMP4CQ96CF2 AP000845.1-201ENST00000581677 2131 ntBASIC18.01■□□□□ 0.47
CHMP4CQ96CF2 RLF-201ENST00000372771 6246 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CHMP4CQ96CF2 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC18■□□□□ 0.47
CHMP4CQ96CF2 GPSM1-205ENST00000440944 3633 ntAPPRIS P2 TSL 5 BASIC18■□□□□ 0.47
CHMP4CQ96CF2 RNF145-212ENST00000611185 3624 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
CHMP4CQ96CF2 NDOR1-202ENST00000371521 2497 ntTSL 1 (best) BASIC18■□□□□ 0.47
CHMP4CQ96CF2 SEMA4F-210ENST00000611975 6007 ntTSL 5 BASIC18■□□□□ 0.47
CHMP4CQ96CF2 SLC25A34-201ENST00000294454 2986 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CHMP4CQ96CF2 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CHMP4CQ96CF2 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC18■□□□□ 0.47
CHMP4CQ96CF2 AC007787.1-201ENST00000588095 1583 ntBASIC18■□□□□ 0.47
CHMP4CQ96CF2 MAGEA8-205ENST00000542674 2084 ntAPPRIS P1 TSL 3 BASIC18■□□□□ 0.47
CHMP4CQ96CF2 WDR25-204ENST00000554175 2055 ntTSL 1 (best) BASIC18■□□□□ 0.47
CHMP4CQ96CF2 ADAMTSL1-207ENST00000380566 2321 ntTSL 1 (best) BASIC18■□□□□ 0.47
CHMP4CQ96CF2 TJAP1-207ENST00000436109 2572 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
CHMP4CQ96CF2 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
CHMP4CQ96CF2 WDR20-205ENST00000424963 2695 ntTSL 5 BASIC18■□□□□ 0.47
CHMP4CQ96CF2 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CHMP4CQ96CF2 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC18■□□□□ 0.47
CHMP4CQ96CF2 RASA4B-207ENST00000541662 2794 ntAPPRIS P2 TSL 2 BASIC18■□□□□ 0.47
CHMP4CQ96CF2 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC18■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 50.4 ms