Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC14.83□□□□□ -0.04
TTC28Q96AY4 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
TTC28Q96AY4 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC14.83□□□□□ -0.04
TTC28Q96AY4 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
TTC28Q96AY4 ACTG1P17-202ENST00000560958 1662 ntTSL 2 BASIC14.83□□□□□ -0.04
TTC28Q96AY4 HFE-201ENST00000309234 1158 ntAPPRIS ALT2 TSL 2 BASIC14.83□□□□□ -0.04
TTC28Q96AY4 JTB-202ENST00000356648 1040 ntTSL 2 BASIC14.83□□□□□ -0.04
TTC28Q96AY4 TLE1P1-201ENST00000422965 589 ntBASIC14.83□□□□□ -0.04
TTC28Q96AY4 CDKN2A-AS1-201ENST00000441769 823 ntBASIC14.83□□□□□ -0.04
TTC28Q96AY4 AC074389.3-201ENST00000450458 454 ntTSL 3 BASIC14.83□□□□□ -0.04
TTC28Q96AY4 AC078852.1-201ENST00000515842 441 ntTSL 3 BASIC14.83□□□□□ -0.04
TTC28Q96AY4 AC145422.1-201ENST00000541574 544 ntTSL 3 BASIC14.83□□□□□ -0.04
TTC28Q96AY4 AC007223.1-201ENST00000564076 572 ntTSL 3 BASIC14.83□□□□□ -0.04
TTC28Q96AY4 MKRN3-202ENST00000564592 629 ntTSL 3 BASIC14.83□□□□□ -0.04
TTC28Q96AY4 PPCDC-206ENST00000564923 757 ntTSL 5 BASIC14.83□□□□□ -0.04
TTC28Q96AY4 RN7SL524P-201ENST00000581152 300 ntBASIC14.83□□□□□ -0.04
TTC28Q96AY4 AL807740.1-201ENST00000636971 567 ntTSL 4 BASIC14.83□□□□□ -0.04
TTC28Q96AY4 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC14.83□□□□□ -0.04
TTC28Q96AY4 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
TTC28Q96AY4 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
TTC28Q96AY4 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
TTC28Q96AY4 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
TTC28Q96AY4 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
TTC28Q96AY4 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
TTC28Q96AY4 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
TTC28Q96AY4 PATZ1-202ENST00000266269 3781 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
TTC28Q96AY4 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
TTC28Q96AY4 TKT-202ENST00000423516 2075 ntTSL 2 BASIC14.82□□□□□ -0.04
TTC28Q96AY4 AC011676.5-201ENST00000624864 2660 ntBASIC14.82□□□□□ -0.04
TTC28Q96AY4 LYRM1-202ENST00000396052 1659 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
TTC28Q96AY4 SVOPL-203ENST00000421622 1653 ntTSL 5 BASIC14.82□□□□□ -0.04
TTC28Q96AY4 ME2P1-201ENST00000426028 1970 ntBASIC14.82□□□□□ -0.04
TTC28Q96AY4 AQP6-204ENST00000615425 2245 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
TTC28Q96AY4 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
TTC28Q96AY4 ASS1P1-201ENST00000402854 1237 ntBASIC14.82□□□□□ -0.04
TTC28Q96AY4 ASS1P2-201ENST00000439895 1223 ntBASIC14.82□□□□□ -0.04
TTC28Q96AY4 AC093484.1-201ENST00000441875 477 ntTSL 5 BASIC14.82□□□□□ -0.04
TTC28Q96AY4 SNRPD2P2-201ENST00000473818 333 ntBASIC14.82□□□□□ -0.04
TTC28Q96AY4 AC105133.1-201ENST00000559749 742 ntTSL 3 BASIC14.82□□□□□ -0.04
TTC28Q96AY4 AC087741.1-204ENST00000573935 646 ntTSL 3 BASIC14.82□□□□□ -0.04
TTC28Q96AY4 AC016590.1-201ENST00000588763 420 ntTSL 2 BASIC14.82□□□□□ -0.04
TTC28Q96AY4 IFITM2-205ENST00000602569 605 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
TTC28Q96AY4 Metazoa_SRP.83-201ENST00000611762 320 ntBASIC14.82□□□□□ -0.04
TTC28Q96AY4 Metazoa_SRP.37-201ENST00000617743 320 ntBASIC14.82□□□□□ -0.04
TTC28Q96AY4 EFHC1-227ENST00000637089 2133 ntTSL 5 BASIC14.82□□□□□ -0.04
TTC28Q96AY4 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
TTC28Q96AY4 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
TTC28Q96AY4 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
TTC28Q96AY4 AC005915.1-201ENST00000624912 2018 ntBASIC14.82□□□□□ -0.04
TTC28Q96AY4 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC14.82□□□□□ -0.04
TTC28Q96AY4 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC14.82□□□□□ -0.04
TTC28Q96AY4 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
TTC28Q96AY4 RIBC1-202ENST00000375327 1420 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
TTC28Q96AY4 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
TTC28Q96AY4 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC14.82□□□□□ -0.04
TTC28Q96AY4 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC14.82□□□□□ -0.04
TTC28Q96AY4 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC14.82□□□□□ -0.04
TTC28Q96AY4 B3GNTL1-201ENST00000320865 1383 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
TTC28Q96AY4 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC14.82□□□□□ -0.04
TTC28Q96AY4 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC14.82□□□□□ -0.04
TTC28Q96AY4 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
TTC28Q96AY4 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
TTC28Q96AY4 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
TTC28Q96AY4 CSAG1-203ENST00000370291 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
TTC28Q96AY4 IGLV3-9-201ENST00000390316 461 ntAPPRIS P1 BASIC14.82□□□□□ -0.04
TTC28Q96AY4 AL353653.1-201ENST00000452336 638 ntTSL 2 BASIC14.82□□□□□ -0.04
TTC28Q96AY4 KCNE3-202ENST00000525550 935 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
TTC28Q96AY4 AL021707.6-201ENST00000609212 491 ntBASIC14.82□□□□□ -0.04
TTC28Q96AY4 AL591424.3-201ENST00000614278 872 ntBASIC14.82□□□□□ -0.04
TTC28Q96AY4 AL499606.1-201ENST00000627866 413 ntTSL 3 BASIC14.82□□□□□ -0.04
TTC28Q96AY4 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
TTC28Q96AY4 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC14.82□□□□□ -0.04
TTC28Q96AY4 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
TTC28Q96AY4 CAPN3-207ENST00000397200 1643 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
TTC28Q96AY4 AC006449.6-201ENST00000612330 2296 ntBASIC14.81□□□□□ -0.04
TTC28Q96AY4 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
TTC28Q96AY4 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC14.81□□□□□ -0.04
TTC28Q96AY4 HNF4A-206ENST00000457232 1339 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
TTC28Q96AY4 PDCD6-201ENST00000264933 1135 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
TTC28Q96AY4 S100A7A-202ENST00000368728 440 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
TTC28Q96AY4 IGHV3-66-201ENST00000390632 427 ntAPPRIS P1 BASIC14.81□□□□□ -0.04
TTC28Q96AY4 OR52M2P-201ENST00000414298 959 ntBASIC14.81□□□□□ -0.04
TTC28Q96AY4 AC010894.2-201ENST00000444196 561 ntTSL 3 BASIC14.81□□□□□ -0.04
TTC28Q96AY4 TATDN3-208ENST00000526997 794 ntTSL 3 BASIC14.81□□□□□ -0.04
TTC28Q96AY4 TATDN3-213ENST00000531963 1291 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
TTC28Q96AY4 SNHG21-204ENST00000559366 674 ntTSL 2 BASIC14.81□□□□□ -0.04
TTC28Q96AY4 AC003688.2-201ENST00000576271 415 ntTSL 3 BASIC14.81□□□□□ -0.04
TTC28Q96AY4 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
TTC28Q96AY4 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC14.81□□□□□ -0.04
TTC28Q96AY4 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
TTC28Q96AY4 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
TTC28Q96AY4 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC14.81□□□□□ -0.04
TTC28Q96AY4 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
TTC28Q96AY4 ZNF77-201ENST00000314531 2002 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
TTC28Q96AY4 KCTD18-202ENST00000409157 2556 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
TTC28Q96AY4 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
TTC28Q96AY4 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC14.81□□□□□ -0.04
TTC28Q96AY4 ING5-213ENST00000636051 4199 ntTSL 5 BASIC14.81□□□□□ -0.04
TTC28Q96AY4 PUF60-209ENST00000527197 1559 ntTSL 5 BASIC14.81□□□□□ -0.04
TTC28Q96AY4 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 106.6 ms