Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SMC1BQ8NDV3 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
SMC1BQ8NDV3 CENPK-202ENST00000396679 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SMC1BQ8NDV3 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SMC1BQ8NDV3 F10-201ENST00000375551 1509 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
SMC1BQ8NDV3 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC17.66■□□□□ 0.42
SMC1BQ8NDV3 AC011840.2-201ENST00000563063 1520 ntBASIC17.66■□□□□ 0.42
SMC1BQ8NDV3 SLC50A1-203ENST00000368404 1300 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SMC1BQ8NDV3 CLUH-202ENST00000570628 5244 ntAPPRIS P2 TSL 2 BASIC17.66■□□□□ 0.42
SMC1BQ8NDV3 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
SMC1BQ8NDV3 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
SMC1BQ8NDV3 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC17.66■□□□□ 0.42
SMC1BQ8NDV3 LINC00665-205ENST00000585356 1557 ntTSL 2 BASIC17.66■□□□□ 0.42
SMC1BQ8NDV3 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SMC1BQ8NDV3 MEIKIN-205ENST00000616644 1438 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
SMC1BQ8NDV3 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC17.65■□□□□ 0.42
SMC1BQ8NDV3 AL162727.3-201ENST00000635661 2787 ntBASIC17.65■□□□□ 0.42
SMC1BQ8NDV3 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
SMC1BQ8NDV3 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
SMC1BQ8NDV3 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC17.65■□□□□ 0.42
SMC1BQ8NDV3 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
SMC1BQ8NDV3 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
SMC1BQ8NDV3 AL451105.2-201ENST00000413763 1234 ntTSL 5 BASIC17.65■□□□□ 0.42
SMC1BQ8NDV3 AL158166.1-201ENST00000433110 371 ntTSL 2 BASIC17.65■□□□□ 0.42
SMC1BQ8NDV3 C14orf178-202ENST00000439131 632 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
SMC1BQ8NDV3 TXNRD2-206ENST00000462330 1129 ntTSL 3 BASIC17.65■□□□□ 0.42
SMC1BQ8NDV3 KLF3-AS1-203ENST00000504219 627 ntTSL 3 BASIC17.65■□□□□ 0.42
SMC1BQ8NDV3 AP000866.5-201ENST00000531241 445 ntTSL 5 BASIC17.65■□□□□ 0.42
SMC1BQ8NDV3 CYB561A3-208ENST00000536915 1094 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
SMC1BQ8NDV3 AC090001.1-201ENST00000553194 467 ntTSL 3 BASIC17.65■□□□□ 0.42
SMC1BQ8NDV3 AC018846.1-201ENST00000568231 183 ntBASIC17.65■□□□□ 0.42
SMC1BQ8NDV3 ANAPC11-206ENST00000571874 636 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
SMC1BQ8NDV3 AP005899.1-201ENST00000579467 544 ntTSL 3 BASIC17.65■□□□□ 0.42
SMC1BQ8NDV3 AC012617.1-201ENST00000586345 797 ntTSL 2 BASIC17.65■□□□□ 0.42
SMC1BQ8NDV3 AC140113.1-201ENST00000603467 169 ntBASIC17.65■□□□□ 0.42
SMC1BQ8NDV3 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
SMC1BQ8NDV3 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
SMC1BQ8NDV3 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
SMC1BQ8NDV3 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SMC1BQ8NDV3 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SMC1BQ8NDV3 CHST3-201ENST00000373115 6970 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SMC1BQ8NDV3 MAPT-201ENST00000262410 6762 ntAPPRIS P4 TSL 1 (best) BASIC17.64■□□□□ 0.42
SMC1BQ8NDV3 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC17.64■□□□□ 0.42
SMC1BQ8NDV3 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC17.64■□□□□ 0.42
SMC1BQ8NDV3 SIKE1-203ENST00000369528 5506 ntAPPRIS ALT1 TSL 1 (best) BASIC17.64■□□□□ 0.42
SMC1BQ8NDV3 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC17.64■□□□□ 0.42
SMC1BQ8NDV3 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SMC1BQ8NDV3 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
SMC1BQ8NDV3 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
SMC1BQ8NDV3 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SMC1BQ8NDV3 PTPN13-204ENST00000436978 8573 ntAPPRIS P4 TSL 5 BASIC17.64■□□□□ 0.41
SMC1BQ8NDV3 MT1E-202ENST00000330439 729 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
SMC1BQ8NDV3 ZNF614-202ENST00000356322 1293 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
SMC1BQ8NDV3 UQCC2-201ENST00000374214 432 ntTSL 5 BASIC17.64■□□□□ 0.41
SMC1BQ8NDV3 TRBJ2-6-201ENST00000390418 53 ntAPPRIS P1 BASIC17.64■□□□□ 0.41
SMC1BQ8NDV3 MAPK3-204ENST00000395200 997 ntTSL 3 BASIC17.64■□□□□ 0.41
SMC1BQ8NDV3 PHACTR2-204ENST00000397980 745 ntTSL 3 BASIC17.64■□□□□ 0.41
SMC1BQ8NDV3 AF274858.1-201ENST00000406288 372 ntBASIC17.64■□□□□ 0.41
SMC1BQ8NDV3 RWDD1-202ENST00000466444 5522 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SMC1BQ8NDV3 EIF5A2-205ENST00000487522 565 ntTSL 3 BASIC17.64■□□□□ 0.41
SMC1BQ8NDV3 AC012213.1-201ENST00000517376 722 ntTSL 3 BASIC17.64■□□□□ 0.41
SMC1BQ8NDV3 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC17.64■□□□□ 0.41
SMC1BQ8NDV3 AC009779.3-204ENST00000549424 367 ntTSL 3 BASIC17.64■□□□□ 0.41
SMC1BQ8NDV3 AC133540.1-201ENST00000620845 1019 ntBASIC17.64■□□□□ 0.41
SMC1BQ8NDV3 AQP7-213ENST00000624075 1270 ntTSL 2 BASIC17.64■□□□□ 0.41
SMC1BQ8NDV3 ATP6AP2-213ENST00000636251 1877 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
SMC1BQ8NDV3 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SMC1BQ8NDV3 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
SMC1BQ8NDV3 ELP5-203ENST00000396627 1389 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.41
SMC1BQ8NDV3 MFSD4B-201ENST00000368847 5958 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SMC1BQ8NDV3 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SMC1BQ8NDV3 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SMC1BQ8NDV3 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC17.64■□□□□ 0.41
SMC1BQ8NDV3 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SMC1BQ8NDV3 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
SMC1BQ8NDV3 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
SMC1BQ8NDV3 CARD11-203ENST00000396946 4366 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SMC1BQ8NDV3 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
SMC1BQ8NDV3 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
SMC1BQ8NDV3 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
SMC1BQ8NDV3 RPP40-202ENST00000380051 1483 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
SMC1BQ8NDV3 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
SMC1BQ8NDV3 PCBP2-202ENST00000359462 1814 ntAPPRIS ALT1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SMC1BQ8NDV3 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SMC1BQ8NDV3 GOSR2-203ENST00000415811 2171 ntTSL 5 BASIC17.63■□□□□ 0.41
SMC1BQ8NDV3 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
SMC1BQ8NDV3 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
SMC1BQ8NDV3 AC020910.5-201ENST00000623668 1865 ntBASIC17.63■□□□□ 0.41
SMC1BQ8NDV3 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC17.63■□□□□ 0.41
SMC1BQ8NDV3 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
SMC1BQ8NDV3 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC17.63■□□□□ 0.41
SMC1BQ8NDV3 ITPR3-201ENST00000374316 9870 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
SMC1BQ8NDV3 FERD3L-201ENST00000275461 640 ntAPPRIS P1 BASIC17.63■□□□□ 0.41
SMC1BQ8NDV3 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SMC1BQ8NDV3 TRAPPC3-201ENST00000373159 590 ntTSL 3 BASIC17.63■□□□□ 0.41
SMC1BQ8NDV3 CST1-202ENST00000398402 655 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
SMC1BQ8NDV3 NUPL2-202ENST00000410002 680 ntTSL 2 BASIC17.63■□□□□ 0.41
SMC1BQ8NDV3 RN7SKP109-201ENST00000410592 316 ntBASIC17.63■□□□□ 0.41
SMC1BQ8NDV3 FKBP11-202ENST00000444214 630 ntTSL 2 BASIC17.63■□□□□ 0.41
SMC1BQ8NDV3 C5orf63-203ENST00000509733 553 ntTSL 4 BASIC17.63■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 60.4 ms