Protein–RNA interactions for Protein: Q7Z3B4

NUP54, Nucleoporin p54, humanhuman

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54Q7Z3B4 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC13.98□□□□□ -0.17
NUP54Q7Z3B4 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC13.98□□□□□ -0.17
NUP54Q7Z3B4 EGLN2-209ENST00000594140 991 ntTSL 2 BASIC13.98□□□□□ -0.17
NUP54Q7Z3B4 FLT3LG-205ENST00000596435 1034 ntTSL 5 BASIC13.98□□□□□ -0.17
NUP54Q7Z3B4 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
NUP54Q7Z3B4 AC132938.4-201ENST00000623835 848 ntBASIC13.98□□□□□ -0.17
NUP54Q7Z3B4 IL32-201ENST00000008180 1056 ntAPPRIS ALT2 TSL 2 BASIC13.98□□□□□ -0.17
NUP54Q7Z3B4 ASF1A-201ENST00000229595 2362 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
NUP54Q7Z3B4 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
NUP54Q7Z3B4 PCM1-201ENST00000325083 6820 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
NUP54Q7Z3B4 PRDM16-203ENST00000378391 5447 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
NUP54Q7Z3B4 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
NUP54Q7Z3B4 REXO1L5P-201ENST00000622260 2098 ntBASIC13.98□□□□□ -0.17
NUP54Q7Z3B4 DHCR7-202ENST00000407721 2601 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
NUP54Q7Z3B4 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
NUP54Q7Z3B4 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC13.98□□□□□ -0.17
NUP54Q7Z3B4 PIGT-246ENST00000639499 2021 ntTSL 5 BASIC13.98□□□□□ -0.17
NUP54Q7Z3B4 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
NUP54Q7Z3B4 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC13.98□□□□□ -0.17
NUP54Q7Z3B4 AQP6-204ENST00000615425 2245 ntAPPRIS P1 TSL 5 BASIC13.98□□□□□ -0.17
NUP54Q7Z3B4 AC091951.1-201ENST00000512854 2465 ntBASIC13.98□□□□□ -0.17
NUP54Q7Z3B4 AC015712.6-201ENST00000431060 5068 ntTSL 2 BASIC13.98□□□□□ -0.17
NUP54Q7Z3B4 SLIT1-201ENST00000266058 7925 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
NUP54Q7Z3B4 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC13.98□□□□□ -0.17
NUP54Q7Z3B4 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC13.98□□□□□ -0.17
NUP54Q7Z3B4 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC13.98□□□□□ -0.17
NUP54Q7Z3B4 RAPH1-202ENST00000319170 9808 ntAPPRIS P4 TSL 1 (best) BASIC13.98□□□□□ -0.17
NUP54Q7Z3B4 USP36-201ENST00000312010 5234 ntAPPRIS P2 TSL 5 BASIC13.98□□□□□ -0.17
NUP54Q7Z3B4 SLC24A3-201ENST00000328041 3929 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
NUP54Q7Z3B4 ABI3-201ENST00000225941 2109 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
NUP54Q7Z3B4 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
NUP54Q7Z3B4 AC004223.3-201ENST00000593039 1638 ntAPPRIS P5 TSL 2 BASIC13.97□□□□□ -0.17
NUP54Q7Z3B4 MAGI1-216ENST00000497477 3555 ntTSL 5 BASIC13.97□□□□□ -0.17
NUP54Q7Z3B4 EML1-201ENST00000262233 4535 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
NUP54Q7Z3B4 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC13.97□□□□□ -0.17
NUP54Q7Z3B4 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
NUP54Q7Z3B4 AC007728.2-201ENST00000563315 2296 ntTSL 5 BASIC13.97□□□□□ -0.17
NUP54Q7Z3B4 FAM86B1-216ENST00000533852 2043 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
NUP54Q7Z3B4 CPSF7-202ENST00000394888 3650 ntAPPRIS P4 TSL 2 BASIC13.97□□□□□ -0.17
NUP54Q7Z3B4 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
NUP54Q7Z3B4 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
NUP54Q7Z3B4 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
NUP54Q7Z3B4 TRPM1-203ENST00000542188 6004 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
NUP54Q7Z3B4 SSTR2-201ENST00000357585 7683 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
NUP54Q7Z3B4 SLC25A33-201ENST00000302692 3854 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
NUP54Q7Z3B4 CAMLG-201ENST00000297156 2221 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
NUP54Q7Z3B4 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
NUP54Q7Z3B4 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC13.97□□□□□ -0.17
NUP54Q7Z3B4 SERPINA3-203ENST00000467132 2660 ntAPPRIS P1 TSL 2 BASIC13.97□□□□□ -0.17
NUP54Q7Z3B4 NAGK-201ENST00000244204 1154 ntAPPRIS P5 TSL 1 (best) BASIC13.97□□□□□ -0.17
NUP54Q7Z3B4 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
NUP54Q7Z3B4 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC13.97□□□□□ -0.17
NUP54Q7Z3B4 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC13.97□□□□□ -0.17
NUP54Q7Z3B4 AC092933.1-201ENST00000393644 945 ntBASIC13.97□□□□□ -0.17
NUP54Q7Z3B4 BOLA2P3-201ENST00000404566 256 ntBASIC13.97□□□□□ -0.17
NUP54Q7Z3B4 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
NUP54Q7Z3B4 C2orf27AP3-201ENST00000434123 579 ntBASIC13.97□□□□□ -0.17
NUP54Q7Z3B4 AC016694.1-201ENST00000434179 700 ntBASIC13.97□□□□□ -0.17
NUP54Q7Z3B4 RAB34-210ENST00000436730 863 ntAPPRIS P1 TSL 3 BASIC13.97□□□□□ -0.17
NUP54Q7Z3B4 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC13.97□□□□□ -0.17
NUP54Q7Z3B4 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC13.97□□□□□ -0.17
NUP54Q7Z3B4 KRT17P8-201ENST00000540749 863 ntBASIC13.97□□□□□ -0.17
NUP54Q7Z3B4 AL118558.1-202ENST00000557242 451 ntTSL 3 BASIC13.97□□□□□ -0.17
NUP54Q7Z3B4 DUX4L47-201ENST00000566374 394 ntBASIC13.97□□□□□ -0.17
NUP54Q7Z3B4 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC13.97□□□□□ -0.17
NUP54Q7Z3B4 ANXA2R-202ENST00000616064 1265 ntAPPRIS P1 BASIC13.97□□□□□ -0.17
NUP54Q7Z3B4 AL354718.3-201ENST00000616414 581 ntBASIC13.97□□□□□ -0.17
NUP54Q7Z3B4 CCL4L2-214ENST00000617416 1258 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
NUP54Q7Z3B4 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
NUP54Q7Z3B4 CR382287.1-201ENST00000623954 586 ntBASIC13.97□□□□□ -0.17
NUP54Q7Z3B4 PRKY-203ENST00000528056 7218 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
NUP54Q7Z3B4 CYP4F22-201ENST00000269703 2641 ntAPPRIS P1 TSL 2 BASIC13.97□□□□□ -0.17
NUP54Q7Z3B4 NTMT1-204ENST00000372486 1487 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
NUP54Q7Z3B4 DDX21-202ENST00000620315 4829 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
NUP54Q7Z3B4 SLC16A1-207ENST00000538576 4374 ntAPPRIS P1 TSL 2 BASIC13.97□□□□□ -0.17
NUP54Q7Z3B4 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC13.97□□□□□ -0.17
NUP54Q7Z3B4 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
NUP54Q7Z3B4 KIF7-201ENST00000394412 4551 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
NUP54Q7Z3B4 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
NUP54Q7Z3B4 SEZ6-203ENST00000360295 4306 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
NUP54Q7Z3B4 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
NUP54Q7Z3B4 TCF7-218ENST00000520958 1408 ntTSL 2 BASIC13.97□□□□□ -0.17
NUP54Q7Z3B4 WSCD2-206ENST00000547525 4481 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
NUP54Q7Z3B4 ASPH-202ENST00000379449 1603 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
NUP54Q7Z3B4 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC13.97□□□□□ -0.17
NUP54Q7Z3B4 ERRFI1-201ENST00000377482 3104 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
NUP54Q7Z3B4 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
NUP54Q7Z3B4 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC13.97□□□□□ -0.17
NUP54Q7Z3B4 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
NUP54Q7Z3B4 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC13.96□□□□□ -0.17
NUP54Q7Z3B4 CALD1-222ENST00000495522 2199 ntTSL 5 BASIC13.96□□□□□ -0.17
NUP54Q7Z3B4 GPER1-201ENST00000297469 2778 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
NUP54Q7Z3B4 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
NUP54Q7Z3B4 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC13.96□□□□□ -0.17
NUP54Q7Z3B4 PES1-204ENST00000402284 2144 ntTSL 5 BASIC13.96□□□□□ -0.17
NUP54Q7Z3B4 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC13.96□□□□□ -0.17
NUP54Q7Z3B4 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
NUP54Q7Z3B4 APAF1-201ENST00000333991 4539 ntTSL 5 BASIC13.96□□□□□ -0.17
NUP54Q7Z3B4 IKZF1-205ENST00000357364 5925 ntTSL 5 BASIC13.96□□□□□ -0.17
NUP54Q7Z3B4 AC005885.1-204ENST00000637885 2885 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 42.4 ms