Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 FBXL12-204ENST00000586469 544 ntTSL 2 BASIC12.96□□□□□ -0.34
ABCA4P78363 OR10B1P-201ENST00000601666 907 ntBASIC12.96□□□□□ -0.34
ABCA4P78363 AC018635.2-201ENST00000608625 364 ntBASIC12.96□□□□□ -0.34
ABCA4P78363 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC12.96□□□□□ -0.34
ABCA4P78363 PML-215ENST00000565898 5393 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.34
ABCA4P78363 EIF4G1-206ENST00000392537 5229 ntTSL 2 BASIC12.96□□□□□ -0.34
ABCA4P78363 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
ABCA4P78363 MAST1-201ENST00000251472 4833 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
ABCA4P78363 INPP5E-201ENST00000371712 3394 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
ABCA4P78363 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC12.95□□□□□ -0.34
ABCA4P78363 AMOTL2-201ENST00000249883 4488 ntAPPRIS P3 TSL 1 (best) BASIC12.95□□□□□ -0.34
ABCA4P78363 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC12.95□□□□□ -0.34
ABCA4P78363 KLHL26-201ENST00000300976 4407 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
ABCA4P78363 ELAVL1-205ENST00000596459 1473 ntAPPRIS P1 TSL 2 BASIC12.95□□□□□ -0.34
ABCA4P78363 SENP6-205ENST00000447266 6501 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
ABCA4P78363 TAOK3-201ENST00000392533 4384 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
ABCA4P78363 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC12.95□□□□□ -0.34
ABCA4P78363 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
ABCA4P78363 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
ABCA4P78363 ACSF2-202ENST00000427954 2251 ntTSL 2 BASIC12.95□□□□□ -0.34
ABCA4P78363 RASSF5-201ENST00000577571 3496 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
ABCA4P78363 NCAPH2-201ENST00000299821 1996 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
ABCA4P78363 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
ABCA4P78363 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC12.95□□□□□ -0.34
ABCA4P78363 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC12.95□□□□□ -0.34
ABCA4P78363 CAB39-201ENST00000258418 3826 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
ABCA4P78363 TNNT2-206ENST00000367320 1007 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
ABCA4P78363 AC069277.1-202ENST00000414438 761 ntTSL 3 BASIC12.95□□□□□ -0.34
ABCA4P78363 PFN2-202ENST00000423691 911 ntTSL 2 BASIC12.95□□□□□ -0.34
ABCA4P78363 C14orf178-202ENST00000439131 632 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
ABCA4P78363 TAPBP-241ENST00000489157 1299 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
ABCA4P78363 C14orf132-202ENST00000553782 536 ntTSL 4 BASIC12.95□□□□□ -0.34
ABCA4P78363 AL135838.1-202ENST00000556411 441 ntTSL 2 BASIC12.95□□□□□ -0.34
ABCA4P78363 LINC00621-201ENST00000577004 1177 ntTSL 4 BASIC12.95□□□□□ -0.34
ABCA4P78363 MIR3147-201ENST00000577811 66 ntBASIC12.95□□□□□ -0.34
ABCA4P78363 AC006064.4-201ENST00000602946 422 ntTSL 2 BASIC12.95□□□□□ -0.34
ABCA4P78363 CLYBL-203ENST00000376355 6771 ntAPPRIS P1 TSL 2 BASIC12.95□□□□□ -0.34
ABCA4P78363 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
ABCA4P78363 AL359915.2-205ENST00000418015 1529 ntTSL 2 BASIC12.95□□□□□ -0.34
ABCA4P78363 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC12.95□□□□□ -0.34
ABCA4P78363 FCHO1-206ENST00000594202 3214 ntTSL 5 BASIC12.95□□□□□ -0.34
ABCA4P78363 PPP1CA-201ENST00000312989 1389 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
ABCA4P78363 API5-202ENST00000420461 2009 ntTSL 2 BASIC12.95□□□□□ -0.34
ABCA4P78363 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
ABCA4P78363 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC12.95□□□□□ -0.34
ABCA4P78363 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC12.95□□□□□ -0.34
ABCA4P78363 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC12.95□□□□□ -0.34
ABCA4P78363 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC12.95□□□□□ -0.34
ABCA4P78363 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC12.95□□□□□ -0.34
ABCA4P78363 SLC51A-201ENST00000296327 1463 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
ABCA4P78363 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
ABCA4P78363 CCDC121-202ENST00000394775 1472 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
ABCA4P78363 GPBAR1-203ENST00000521462 1465 ntAPPRIS P1 TSL 2 BASIC12.95□□□□□ -0.34
ABCA4P78363 DRC3-216ENST00000584166 1953 ntTSL 5 BASIC12.95□□□□□ -0.34
ABCA4P78363 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC12.95□□□□□ -0.34
ABCA4P78363 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC12.95□□□□□ -0.34
ABCA4P78363 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
ABCA4P78363 VARS2-211ENST00000541562 3566 ntTSL 2 BASIC12.95□□□□□ -0.34
ABCA4P78363 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
ABCA4P78363 IL12RB2-201ENST00000262345 4040 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
ABCA4P78363 IL27-201ENST00000356897 1044 ntAPPRIS P2 TSL 1 (best) BASIC12.95□□□□□ -0.34
ABCA4P78363 GEMIN7-202ENST00000391951 716 ntAPPRIS P1 TSL 2 BASIC12.95□□□□□ -0.34
ABCA4P78363 AP000356.1-201ENST00000438893 364 ntTSL 3 BASIC12.95□□□□□ -0.34
ABCA4P78363 EFCAB10-201ENST00000460135 717 ntTSL 2 BASIC12.95□□□□□ -0.34
ABCA4P78363 LINC01475-201ENST00000548010 766 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
ABCA4P78363 LINC01481-204ENST00000550216 494 ntTSL 2 BASIC12.95□□□□□ -0.34
ABCA4P78363 WDR7-208ENST00000589935 544 ntTSL 4 BASIC12.95□□□□□ -0.34
ABCA4P78363 CYTH1-201ENST00000361101 3311 ntAPPRIS ALT1 TSL 1 (best) BASIC12.95□□□□□ -0.34
ABCA4P78363 CYTH1-202ENST00000446868 3311 ntAPPRIS ALT1 TSL 5 BASIC12.95□□□□□ -0.34
ABCA4P78363 AXL-201ENST00000301178 4737 ntAPPRIS P4 TSL 1 (best) BASIC12.95□□□□□ -0.34
ABCA4P78363 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC12.95□□□□□ -0.34
ABCA4P78363 LPAR1-203ENST00000374431 3637 ntAPPRIS P2 TSL 1 (best) BASIC12.94□□□□□ -0.34
ABCA4P78363 SCML4-201ENST00000369020 1491 ntAPPRIS P1 TSL 5 BASIC12.94□□□□□ -0.34
ABCA4P78363 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC12.94□□□□□ -0.34
ABCA4P78363 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC12.94□□□□□ -0.34
ABCA4P78363 ZNF581-203ENST00000587252 1324 ntAPPRIS P1 TSL 2 BASIC12.94□□□□□ -0.34
ABCA4P78363 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC12.94□□□□□ -0.34
ABCA4P78363 MBTD1-201ENST00000376381 1420 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
ABCA4P78363 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC12.94□□□□□ -0.34
ABCA4P78363 ANKHD1-202ENST00000297183 7606 ntTSL 5 BASIC12.94□□□□□ -0.34
ABCA4P78363 TMEM9-204ENST00000367334 1529 ntAPPRIS P3 TSL 1 (best) BASIC12.94□□□□□ -0.34
ABCA4P78363 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC12.94□□□□□ -0.34
ABCA4P78363 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC12.94□□□□□ -0.34
ABCA4P78363 CHIA-204ENST00000369740 1625 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
ABCA4P78363 PCDHB13-201ENST00000341948 5061 ntAPPRIS P1 BASIC12.94□□□□□ -0.34
ABCA4P78363 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
ABCA4P78363 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC12.94□□□□□ -0.34
ABCA4P78363 SRD5A3-201ENST00000264228 4190 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
ABCA4P78363 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
ABCA4P78363 VPS29-201ENST00000360579 1091 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
ABCA4P78363 CD1E-202ENST00000368155 696 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
ABCA4P78363 CD1E-204ENST00000368157 399 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
ABCA4P78363 STX1A-202ENST00000395154 1022 ntTSL 3 BASIC12.94□□□□□ -0.34
ABCA4P78363 AL627389.1-201ENST00000413508 1182 ntBASIC12.94□□□□□ -0.34
ABCA4P78363 CEP164P1-201ENST00000455142 418 ntBASIC12.94□□□□□ -0.34
ABCA4P78363 WSPAR-201ENST00000513561 683 ntTSL 3 BASIC12.94□□□□□ -0.34
ABCA4P78363 AC090164.2-201ENST00000611487 516 ntBASIC12.94□□□□□ -0.34
ABCA4P78363 SPIN3-207ENST00000638386 4461 ntAPPRIS P1 TSL 2 BASIC12.94□□□□□ -0.34
ABCA4P78363 PPIL3-201ENST00000286175 1370 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
ABCA4P78363 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC12.94□□□□□ -0.34
Retrieved 100 of 98,524 protein–RNA pairs in 44.6 ms