Protein–RNA interactions for Protein: P67936

TPM4, Tropomyosin alpha-4 chain, humanhuman

Predictions only

Length 248 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4P67936 PNMA1-201ENST00000316836 2590 ntAPPRIS P1 BASIC16.96■□□□□ 0.31
TPM4P67936 RSPH9-202ENST00000372165 2586 ntTSL 2 BASIC16.96■□□□□ 0.31
TPM4P67936 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.31
TPM4P67936 NUCB1-201ENST00000405315 2668 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.31
TPM4P67936 NOC2L-201ENST00000327044 2790 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
TPM4P67936 SLC25A35-201ENST00000380067 2785 ntTSL 2 BASIC16.96■□□□□ 0.31
TPM4P67936 SYNPO-205ENST00000522122 5098 ntAPPRIS ALT2 TSL 2 BASIC16.96■□□□□ 0.31
TPM4P67936 CDK2AP1-205ENST00000542174 1812 ntTSL 2 BASIC16.96■□□□□ 0.31
TPM4P67936 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
TPM4P67936 TSFM-207ENST00000540550 1935 ntTSL 2 BASIC16.96■□□□□ 0.31
TPM4P67936 IL20RA-201ENST00000316649 3485 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
TPM4P67936 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.31
TPM4P67936 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC16.96■□□□□ 0.31
TPM4P67936 AC016876.1-201ENST00000415124 352 ntTSL 3 BASIC16.96■□□□□ 0.31
TPM4P67936 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC16.96■□□□□ 0.31
TPM4P67936 RPP21-221ENST00000428040 594 ntTSL 2 BASIC16.96■□□□□ 0.31
TPM4P67936 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC16.96■□□□□ 0.31
TPM4P67936 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC16.96■□□□□ 0.31
TPM4P67936 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC16.96■□□□□ 0.31
TPM4P67936 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC16.96■□□□□ 0.31
TPM4P67936 AC022447.6-201ENST00000515522 438 ntBASIC16.96■□□□□ 0.31
TPM4P67936 GATD1-206ENST00000526325 756 ntTSL 5 BASIC16.96■□□□□ 0.31
TPM4P67936 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC16.96■□□□□ 0.31
TPM4P67936 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC16.96■□□□□ 0.31
TPM4P67936 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
TPM4P67936 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC16.96■□□□□ 0.31
TPM4P67936 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC16.96■□□□□ 0.31
TPM4P67936 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
TPM4P67936 TM4SF19-203ENST00000446879 1582 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
TPM4P67936 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
TPM4P67936 TUBGCP6-201ENST00000248846 5612 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
TPM4P67936 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC16.96■□□□□ 0.31
TPM4P67936 ALOX15-201ENST00000293761 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
TPM4P67936 CYP4F11-202ENST00000326742 2877 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
TPM4P67936 ZKSCAN7-201ENST00000273320 3477 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
TPM4P67936 PTPN9-201ENST00000306726 3862 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.31
TPM4P67936 RTN4-202ENST00000337526 4790 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
TPM4P67936 TRIM11-204ENST00000493030 5774 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
TPM4P67936 SLC38A9-202ENST00000396865 2927 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
TPM4P67936 NDRG4-217ENST00000562999 2931 ntTSL 5 BASIC16.96■□□□□ 0.3
TPM4P67936 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
TPM4P67936 MED4-201ENST00000258648 2022 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.3
TPM4P67936 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC16.96■□□□□ 0.3
TPM4P67936 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC16.96■□□□□ 0.3
TPM4P67936 AL121723.1-201ENST00000445194 1519 ntBASIC16.96■□□□□ 0.3
TPM4P67936 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.3
TPM4P67936 GAL3ST4-202ENST00000411994 1404 ntTSL 2 BASIC16.96■□□□□ 0.3
TPM4P67936 FAM120A-202ENST00000375389 3585 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
TPM4P67936 MAGIX-208ENST00000616266 3295 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
TPM4P67936 ALCAM-201ENST00000306107 4701 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
TPM4P67936 MED12L-203ENST00000422248 2757 ntAPPRIS ALT2 TSL 2 BASIC16.95■□□□□ 0.3
TPM4P67936 POU6F1-208ENST00000550824 2664 ntTSL 5 BASIC16.95■□□□□ 0.3
TPM4P67936 SGK2-201ENST00000341458 2498 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
TPM4P67936 C22orf34-204ENST00000414287 2197 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
TPM4P67936 MEX3B-201ENST00000329713 3528 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
TPM4P67936 BARHL2-201ENST00000370445 1979 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
TPM4P67936 LAMB1-201ENST00000222399 5725 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
TPM4P67936 KDM5C-208ENST00000452825 6096 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
TPM4P67936 FANCG-201ENST00000378643 2631 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.3
TPM4P67936 TCEAL4-209ENST00000472745 1571 ntAPPRIS P3 TSL 5 BASIC16.95■□□□□ 0.3
TPM4P67936 PPFIA4-203ENST00000367240 6434 ntAPPRIS P5 TSL 5 BASIC16.95■□□□□ 0.3
TPM4P67936 MARK3-205ENST00000429436 3371 ntAPPRIS ALT1 TSL 1 (best) BASIC16.95■□□□□ 0.3
TPM4P67936 ZFP64-201ENST00000216923 3264 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
TPM4P67936 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC16.95■□□□□ 0.3
TPM4P67936 AC018665.1-201ENST00000622927 1362 ntBASIC16.95■□□□□ 0.3
TPM4P67936 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
TPM4P67936 GIPC2-201ENST00000370759 3847 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
TPM4P67936 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC16.95■□□□□ 0.3
TPM4P67936 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
TPM4P67936 KRT18P64-201ENST00000434946 1219 ntBASIC16.95■□□□□ 0.3
TPM4P67936 PHKG1-210ENST00000537360 2139 ntAPPRIS ALT1 TSL 1 (best) BASIC16.95■□□□□ 0.3
TPM4P67936 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC16.95■□□□□ 0.3
TPM4P67936 AL079307.3-201ENST00000556114 283 ntBASIC16.95■□□□□ 0.3
TPM4P67936 BX640515.1-201ENST00000617215 977 ntBASIC16.95■□□□□ 0.3
TPM4P67936 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC16.95■□□□□ 0.3
TPM4P67936 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC16.95■□□□□ 0.3
TPM4P67936 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC16.95■□□□□ 0.3
TPM4P67936 FAM219A-209ENST00000445726 3644 ntAPPRIS ALT1 TSL 2 BASIC16.95■□□□□ 0.3
TPM4P67936 UBE2D1-201ENST00000373910 2659 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
TPM4P67936 CAMKK2-209ENST00000446440 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
TPM4P67936 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
TPM4P67936 NCOR2-208ENST00000429285 8475 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
TPM4P67936 DDN-201ENST00000421952 3749 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
TPM4P67936 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
TPM4P67936 BLOC1S6-212ENST00000566753 1996 ntTSL 2 BASIC16.95■□□□□ 0.3
TPM4P67936 MTRF1L-202ENST00000367231 3539 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
TPM4P67936 STX18-AS1-207ENST00000610009 2406 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
TPM4P67936 IL17RD-203ENST00000463523 2348 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
TPM4P67936 TSPAN18-207ENST00000520358 3316 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
TPM4P67936 ADAMTS13-202ENST00000356589 4349 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
TPM4P67936 XPR1-201ENST00000367589 4126 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
TPM4P67936 SCYL1-208ENST00000527009 2586 ntTSL 5 BASIC16.94■□□□□ 0.3
TPM4P67936 KCNH4-201ENST00000264661 3920 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
TPM4P67936 GUF1-201ENST00000281543 4449 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
TPM4P67936 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
TPM4P67936 DPYSL4-201ENST00000338492 2729 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
TPM4P67936 SPAST-201ENST00000315285 5117 ntAPPRIS P4 TSL 1 (best) BASIC16.94■□□□□ 0.3
TPM4P67936 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
TPM4P67936 VCAN-211ENST00000513984 1825 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
TPM4P67936 TMEM117-207ENST00000551577 2643 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 41.9 ms