Protein–RNA interactions for Protein: P62891

RPL39, 60S ribosomal protein L39, humanhuman

Known RBP Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPL39P62891 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
RPL39P62891 PARVB-201ENST00000338758 5429 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
RPL39P62891 ARHGEF10-207ENST00000520359 5472 ntAPPRIS ALT2 TSL 1 (best) BASIC10.72□□□□□ -0.69
RPL39P62891 NEK2-201ENST00000366998 1865 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
RPL39P62891 SLC4A7-211ENST00000445684 4061 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
RPL39P62891 OSBPL1A-201ENST00000319481 4195 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
RPL39P62891 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
RPL39P62891 SLCO2B1-217ENST00000532236 2593 ntAPPRIS ALT2 TSL 2 BASIC10.72□□□□□ -0.69
RPL39P62891 AFDN-211ENST00000447894 5475 ntAPPRIS P1 TSL 5 BASIC10.71□□□□□ -0.69
RPL39P62891 NDNF-201ENST00000379692 2885 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
RPL39P62891 DAZL-201ENST00000250863 3104 ntTSL 1 (best) BASIC10.71□□□□□ -0.69
RPL39P62891 MAP7-204ENST00000454590 3119 ntAPPRIS ALT2 TSL 2 BASIC10.71□□□□□ -0.69
RPL39P62891 ZNF785-201ENST00000395216 3282 ntAPPRIS P2 TSL 1 (best) BASIC10.71□□□□□ -0.69
RPL39P62891 WASHC5-202ENST00000517845 3667 ntTSL 2 BASIC10.71□□□□□ -0.69
RPL39P62891 ATP12A-201ENST00000218548 3732 ntTSL 1 (best) BASIC10.71□□□□□ -0.69
RPL39P62891 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
RPL39P62891 HCFC2-201ENST00000229330 5734 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
RPL39P62891 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
RPL39P62891 MICB-201ENST00000252229 2446 ntAPPRIS P3 TSL 1 (best) BASIC10.71□□□□□ -0.69
RPL39P62891 DAGLB-201ENST00000297056 2897 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
RPL39P62891 MKRN3-201ENST00000314520 2337 ntAPPRIS P1 BASIC10.71□□□□□ -0.69
RPL39P62891 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
RPL39P62891 MFSD2B-201ENST00000338315 2850 ntAPPRIS ALT2 TSL 5 BASIC10.71□□□□□ -0.69
RPL39P62891 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC10.71□□□□□ -0.69
RPL39P62891 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC10.71□□□□□ -0.69
RPL39P62891 SLC35E2-202ENST00000355439 2078 ntAPPRIS ALT2 TSL 1 (best) BASIC10.71□□□□□ -0.69
RPL39P62891 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC10.71□□□□□ -0.69
RPL39P62891 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC10.71□□□□□ -0.69
RPL39P62891 SPACA9-203ENST00000372136 2536 ntTSL 1 (best) BASIC10.71□□□□□ -0.69
RPL39P62891 CCND3-201ENST00000372987 2233 ntTSL 2 BASIC10.71□□□□□ -0.69
RPL39P62891 IPPK-202ENST00000375522 882 ntTSL 3 BASIC10.71□□□□□ -0.69
RPL39P62891 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
RPL39P62891 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC10.71□□□□□ -0.69
RPL39P62891 ZNF846-201ENST00000397902 2016 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
RPL39P62891 FO393414.2-201ENST00000405153 598 ntBASIC10.71□□□□□ -0.69
RPL39P62891 C4B-AS1-205ENST00000415626 2095 ntTSL 2 BASIC10.71□□□□□ -0.69
RPL39P62891 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC10.71□□□□□ -0.69
RPL39P62891 RARG-203ENST00000425354 2959 ntAPPRIS P3 TSL 1 (best) BASIC10.71□□□□□ -0.69
RPL39P62891 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC10.71□□□□□ -0.69
RPL39P62891 C4A-AS1-204ENST00000458633 2095 ntTSL 2 BASIC10.71□□□□□ -0.69
RPL39P62891 ZBTB20-215ENST00000481632 2800 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
RPL39P62891 KRT18P56-201ENST00000507275 550 ntBASIC10.71□□□□□ -0.69
RPL39P62891 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC10.71□□□□□ -0.69
RPL39P62891 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC10.71□□□□□ -0.69
RPL39P62891 RARRES2P9-201ENST00000565168 469 ntBASIC10.71□□□□□ -0.69
RPL39P62891 PLA2G15-209ENST00000566188 1203 ntTSL 2 BASIC10.71□□□□□ -0.69
RPL39P62891 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC10.71□□□□□ -0.69
RPL39P62891 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC10.71□□□□□ -0.69
RPL39P62891 AC025181.2-201ENST00000606994 802 ntBASIC10.71□□□□□ -0.69
RPL39P62891 AC138894.1-201ENST00000635887 2824 ntTSL 5 BASIC10.71□□□□□ -0.69
RPL39P62891 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC10.71□□□□□ -0.69
RPL39P62891 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC10.71□□□□□ -0.69
RPL39P62891 PPT1-213ENST00000641319 2388 ntBASIC10.71□□□□□ -0.69
RPL39P62891 RUNX3-203ENST00000399916 4340 ntAPPRIS ALT2 TSL 2 BASIC10.71□□□□□ -0.7
RPL39P62891 NRXN1-222ENST00000625672 8113 ntTSL 1 (best) BASIC10.71□□□□□ -0.7
RPL39P62891 AC025594.2-201ENST00000609480 3902 ntAPPRIS P1 TSL 3 BASIC10.71□□□□□ -0.7
RPL39P62891 WHRN-202ENST00000362057 3566 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.7
RPL39P62891 SP8-203ENST00000617581 3496 ntAPPRIS ALT2 TSL 1 (best) BASIC10.71□□□□□ -0.7
RPL39P62891 DHX16-202ENST00000376442 3445 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.7
RPL39P62891 GRM7-203ENST00000389336 2901 ntAPPRIS ALT1 TSL 1 (best) BASIC10.71□□□□□ -0.7
RPL39P62891 PRF1-202ENST00000441259 2533 ntAPPRIS P1 TSL 5 BASIC10.71□□□□□ -0.7
RPL39P62891 ASF1A-201ENST00000229595 2362 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
RPL39P62891 WASHC2C-210ENST00000623400 4616 ntAPPRIS ALT2 TSL 1 (best) BASIC10.7□□□□□ -0.7
RPL39P62891 EDEM3-201ENST00000318130 6898 ntAPPRIS P2 TSL 1 (best) BASIC10.7□□□□□ -0.7
RPL39P62891 ISLR-202ENST00000395118 2175 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
RPL39P62891 SRP54-202ENST00000546080 2187 ntTSL 2 BASIC10.7□□□□□ -0.7
RPL39P62891 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC10.7□□□□□ -0.7
RPL39P62891 MX1-218ENST00000619682 1980 ntTSL 5 BASIC10.7□□□□□ -0.7
RPL39P62891 CCDC186-202ENST00000369286 1928 ntTSL 1 (best) BASIC10.7□□□□□ -0.7
RPL39P62891 OPN5-202ENST00000371211 1801 ntAPPRIS P2 TSL 1 (best) BASIC10.7□□□□□ -0.7
RPL39P62891 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
RPL39P62891 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC10.7□□□□□ -0.7
RPL39P62891 CYP1B1-AS1-201ENST00000413828 1781 ntTSL 5 BASIC10.7□□□□□ -0.7
RPL39P62891 GNB1L-201ENST00000329517 6706 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
RPL39P62891 SATB2-211ENST00000614512 4972 ntTSL 5 BASIC10.7□□□□□ -0.7
RPL39P62891 STK26-202ENST00000394334 3288 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
RPL39P62891 COL4A1-201ENST00000375820 6532 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
RPL39P62891 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC10.7□□□□□ -0.7
RPL39P62891 SLIT3-206ENST00000519560 9706 ntAPPRIS P3 TSL 1 (best) BASIC10.7□□□□□ -0.7
RPL39P62891 ZNF362-205ENST00000539719 3106 ntAPPRIS P1 TSL 5 BASIC10.7□□□□□ -0.7
RPL39P62891 CYTH2-203ENST00000427476 4606 ntAPPRIS ALT1 TSL 1 (best) BASIC10.7□□□□□ -0.7
RPL39P62891 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC10.7□□□□□ -0.7
RPL39P62891 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC10.7□□□□□ -0.7
RPL39P62891 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
RPL39P62891 ADAMTS13-202ENST00000356589 4349 ntAPPRIS ALT2 TSL 1 (best) BASIC10.7□□□□□ -0.7
RPL39P62891 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC10.7□□□□□ -0.7
RPL39P62891 BOLL-203ENST00000392296 2838 ntAPPRIS ALT2 TSL 1 (best) BASIC10.7□□□□□ -0.7
RPL39P62891 HOXA3-201ENST00000317201 2761 ntAPPRIS P1 TSL 5 BASIC10.7□□□□□ -0.7
RPL39P62891 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
RPL39P62891 EHMT2-204ENST00000395728 4129 ntAPPRIS ALT2 TSL 1 (best) BASIC10.7□□□□□ -0.7
RPL39P62891 SLC1A7-202ENST00000371494 2637 ntAPPRIS P3 TSL 1 (best) BASIC10.7□□□□□ -0.7
RPL39P62891 DDX41-208ENST00000507955 2607 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
RPL39P62891 TMEM87B-201ENST00000283206 5212 ntAPPRIS P1 TSL 2 BASIC10.7□□□□□ -0.7
RPL39P62891 AC004870.1-201ENST00000315132 882 ntBASIC10.7□□□□□ -0.7
RPL39P62891 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC10.7□□□□□ -0.7
RPL39P62891 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC10.7□□□□□ -0.7
RPL39P62891 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
RPL39P62891 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC10.7□□□□□ -0.7
RPL39P62891 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC10.7□□□□□ -0.7
RPL39P62891 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC10.7□□□□□ -0.7
Retrieved 100 of 98,524 protein–RNA pairs in 70.8 ms