Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 KRT17P5-201ENST00000332088 839 ntBASIC20.42■□□□□ 0.86
MSH6P52701 ZNRD1-203ENST00000376782 736 ntAPPRIS P1 TSL 2 BASIC20.42■□□□□ 0.86
MSH6P52701 PRKAR2A-AS1-203ENST00000431705 592 ntTSL 4 BASIC20.42■□□□□ 0.86
MSH6P52701 SERBP1P2-201ENST00000436888 1164 ntBASIC20.42■□□□□ 0.86
MSH6P52701 APCDD1L-AS1-206ENST00000445984 566 ntTSL 3 BASIC20.42■□□□□ 0.86
MSH6P52701 APCDD1L-AS1-208ENST00000448374 546 ntTSL 4 BASIC20.42■□□□□ 0.86
MSH6P52701 VPS18-202ENST00000558474 873 ntTSL 3 BASIC20.42■□□□□ 0.86
MSH6P52701 ABHD17AP9-201ENST00000561925 548 ntBASIC20.42■□□□□ 0.86
MSH6P52701 AC025048.2-201ENST00000590744 786 ntTSL 2 BASIC20.42■□□□□ 0.86
MSH6P52701 RPS5-204ENST00000598098 536 ntTSL 2 BASIC20.42■□□□□ 0.86
MSH6P52701 DUSP22-213ENST00000605035 1231 ntTSL 2 BASIC20.42■□□□□ 0.86
MSH6P52701 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
MSH6P52701 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC20.42■□□□□ 0.86
MSH6P52701 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC20.42■□□□□ 0.86
MSH6P52701 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC20.42■□□□□ 0.86
MSH6P52701 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC20.42■□□□□ 0.86
MSH6P52701 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
MSH6P52701 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
MSH6P52701 KIR2DS4-201ENST00000339924 1608 ntAPPRIS P5 TSL 1 (best) BASIC20.42■□□□□ 0.86
MSH6P52701 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC20.42■□□□□ 0.86
MSH6P52701 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC20.41■□□□□ 0.86
MSH6P52701 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC20.41■□□□□ 0.86
MSH6P52701 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC20.41■□□□□ 0.86
MSH6P52701 SPO11-203ENST00000371263 1834 ntAPPRIS P4 TSL 1 (best) BASIC20.41■□□□□ 0.86
MSH6P52701 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC20.41■□□□□ 0.86
MSH6P52701 RANBP1-208ENST00000430524 1389 ntTSL 3 BASIC20.41■□□□□ 0.86
MSH6P52701 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
MSH6P52701 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC20.41■□□□□ 0.86
MSH6P52701 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
MSH6P52701 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
MSH6P52701 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC20.41■□□□□ 0.86
MSH6P52701 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
MSH6P52701 GJB1-203ENST00000374029 1587 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
MSH6P52701 OXA1L-212ENST00000604262 1571 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
MSH6P52701 TMSB15A-201ENST00000289373 685 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
MSH6P52701 PSMB4-201ENST00000290541 964 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
MSH6P52701 PPIA-201ENST00000355968 818 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
MSH6P52701 SURF4-203ENST00000371991 715 ntTSL 3 BASIC20.41■□□□□ 0.86
MSH6P52701 BRI3P1-201ENST00000440440 378 ntBASIC20.41■□□□□ 0.86
MSH6P52701 PPIA-208ENST00000489459 907 ntTSL 2 BASIC20.41■□□□□ 0.86
MSH6P52701 AF111169.2-201ENST00000553758 721 ntTSL 3 BASIC20.41■□□□□ 0.86
MSH6P52701 AC008050.1-201ENST00000554926 632 ntTSL 3 BASIC20.41■□□□□ 0.86
MSH6P52701 AC129507.4-201ENST00000570501 411 ntTSL 2 BASIC20.41■□□□□ 0.86
MSH6P52701 AC004528.1-201ENST00000588380 641 ntTSL 5 BASIC20.41■□□□□ 0.86
MSH6P52701 PPIA-210ENST00000620047 827 ntTSL 5 BASIC20.41■□□□□ 0.86
MSH6P52701 AC009145.4-201ENST00000625119 1294 ntBASIC20.41■□□□□ 0.86
MSH6P52701 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC20.41■□□□□ 0.86
MSH6P52701 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC20.41■□□□□ 0.86
MSH6P52701 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
MSH6P52701 COLEC11-203ENST00000382062 1633 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
MSH6P52701 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
MSH6P52701 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC20.41■□□□□ 0.86
MSH6P52701 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
MSH6P52701 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
MSH6P52701 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
MSH6P52701 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC20.41■□□□□ 0.86
MSH6P52701 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
MSH6P52701 ZNF846-201ENST00000397902 2016 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
MSH6P52701 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
MSH6P52701 AL513523.2-202ENST00000427283 2040 ntBASIC20.41■□□□□ 0.86
MSH6P52701 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
MSH6P52701 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
MSH6P52701 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
MSH6P52701 SLC6A9-207ENST00000475075 1881 ntTSL 2 BASIC20.4■□□□□ 0.86
MSH6P52701 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
MSH6P52701 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
MSH6P52701 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC20.4■□□□□ 0.86
MSH6P52701 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
MSH6P52701 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC20.4■□□□□ 0.86
MSH6P52701 HCG9-201ENST00000376800 663 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
MSH6P52701 OST4-201ENST00000429985 559 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
MSH6P52701 AC093484.1-201ENST00000441875 477 ntTSL 5 BASIC20.4■□□□□ 0.86
MSH6P52701 FKBP1B-205ENST00000452109 953 ntTSL 3 BASIC20.4■□□□□ 0.86
MSH6P52701 AC034231.1-201ENST00000507251 537 ntTSL 4 BASIC20.4■□□□□ 0.86
MSH6P52701 AC003686.1-201ENST00000550956 1034 ntBASIC20.4■□□□□ 0.86
MSH6P52701 TSHR-205ENST00000554263 1184 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
MSH6P52701 TSHR-206ENST00000554435 1089 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
MSH6P52701 AC135782.2-201ENST00000562040 472 ntTSL 3 BASIC20.4■□□□□ 0.86
MSH6P52701 SNHG15-205ENST00000580458 710 ntTSL 2 BASIC20.4■□□□□ 0.86
MSH6P52701 AC010632.2-201ENST00000588369 1224 ntBASIC20.4■□□□□ 0.86
MSH6P52701 AC007250.1-201ENST00000608934 338 ntBASIC20.4■□□□□ 0.86
MSH6P52701 RBM4B-201ENST00000310046 1840 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
MSH6P52701 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC20.4■□□□□ 0.86
MSH6P52701 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC20.4■□□□□ 0.86
MSH6P52701 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
MSH6P52701 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC20.4■□□□□ 0.86
MSH6P52701 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC20.4■□□□□ 0.86
MSH6P52701 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
MSH6P52701 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC20.4■□□□□ 0.86
MSH6P52701 CSRP1-201ENST00000340006 1952 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
MSH6P52701 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC20.4■□□□□ 0.86
MSH6P52701 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC20.39■□□□□ 0.86
MSH6P52701 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
MSH6P52701 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.86
MSH6P52701 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC20.39■□□□□ 0.86
MSH6P52701 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
MSH6P52701 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
MSH6P52701 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
MSH6P52701 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.85
MSH6P52701 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 328.9 ms