Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 LST1-202ENST00000303757 604 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
PTPN9P43378 IGLV4-69-201ENST00000390282 419 ntAPPRIS P1 BASIC15.62■□□□□ 0.09
PTPN9P43378 CD8B2-202ENST00000417670 633 ntBASIC15.62■□□□□ 0.09
PTPN9P43378 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC15.62■□□□□ 0.09
PTPN9P43378 CNN2P8-201ENST00000421872 913 ntBASIC15.62■□□□□ 0.09
PTPN9P43378 LINC02158-201ENST00000432377 897 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
PTPN9P43378 KRT43P-201ENST00000434019 910 ntBASIC15.62■□□□□ 0.09
PTPN9P43378 FKBP11-203ENST00000453172 959 ntAPPRIS ALT2 TSL 2 BASIC15.62■□□□□ 0.09
PTPN9P43378 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC15.62■□□□□ 0.09
PTPN9P43378 GS1-24F4.2-201ENST00000500823 1110 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
PTPN9P43378 RPL28-206ENST00000558752 671 ntTSL 3 BASIC15.62■□□□□ 0.09
PTPN9P43378 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
PTPN9P43378 AC091891.1-201ENST00000560688 688 ntTSL 3 BASIC15.62■□□□□ 0.09
PTPN9P43378 APRT-204ENST00000563655 709 ntTSL 5 BASIC15.62■□□□□ 0.09
PTPN9P43378 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC15.62■□□□□ 0.09
PTPN9P43378 APOC4-201ENST00000591600 348 ntTSL 3 BASIC15.62■□□□□ 0.09
PTPN9P43378 SPIN2A-203ENST00000614076 966 ntTSL 3 BASIC15.62■□□□□ 0.09
PTPN9P43378 FKBP4-208ENST00000630279 156 ntTSL 5 BASIC15.62■□□□□ 0.09
PTPN9P43378 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC15.62■□□□□ 0.09
PTPN9P43378 RMND1-202ENST00000367303 1854 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
PTPN9P43378 SMPDL3A-201ENST00000368440 1851 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
PTPN9P43378 COCH-203ENST00000460581 2688 ntTSL 2 BASIC15.62■□□□□ 0.09
PTPN9P43378 FKBP9-201ENST00000242209 3462 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
PTPN9P43378 TMC6-216ENST00000590602 5268 ntAPPRIS P1 TSL 2 BASIC15.62■□□□□ 0.09
PTPN9P43378 JKAMP-207ENST00000554271 2137 ntTSL 2 BASIC15.62■□□□□ 0.09
PTPN9P43378 KLF5-201ENST00000377687 3566 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
PTPN9P43378 CA10-203ENST00000451037 3189 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
PTPN9P43378 AL354702.1-201ENST00000442006 1960 ntBASIC15.62■□□□□ 0.09
PTPN9P43378 ARHGEF16-201ENST00000378371 2219 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
PTPN9P43378 ATG5-201ENST00000343245 3092 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
PTPN9P43378 BMP1-203ENST00000354870 3989 ntTSL 5 BASIC15.61■□□□□ 0.09
PTPN9P43378 CCDC116-201ENST00000292779 2260 ntAPPRIS P2 TSL 1 (best) BASIC15.61■□□□□ 0.09
PTPN9P43378 RPL15-201ENST00000307839 2730 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
PTPN9P43378 TFAP2A-213ENST00000482890 2071 ntAPPRIS P3 TSL 5 BASIC15.61■□□□□ 0.09
PTPN9P43378 GSTCD-206ENST00000507281 2091 ntTSL 5 BASIC15.61■□□□□ 0.09
PTPN9P43378 NPY5R-203ENST00000515560 3183 ntAPPRIS P1 TSL 2 BASIC15.61■□□□□ 0.09
PTPN9P43378 AP000593.2-201ENST00000542775 1433 ntBASIC15.61■□□□□ 0.09
PTPN9P43378 PRDM1-203ENST00000369096 5164 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
PTPN9P43378 HYAL2-208ENST00000447092 4054 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
PTPN9P43378 EPOP-201ENST00000621654 3719 ntAPPRIS P1 BASIC15.61■□□□□ 0.09
PTPN9P43378 SEMA3G-201ENST00000231721 4899 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
PTPN9P43378 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC15.61■□□□□ 0.09
PTPN9P43378 SYBU-208ENST00000440310 3072 ntAPPRIS ALT2 TSL 5 BASIC15.61■□□□□ 0.09
PTPN9P43378 NCR3-201ENST00000340027 1042 ntAPPRIS P3 TSL 1 (best) BASIC15.61■□□□□ 0.09
PTPN9P43378 SS18L1-202ENST00000370848 1238 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
PTPN9P43378 TSPAN32-204ENST00000381121 999 ntAPPRIS ALT2 TSL 5 BASIC15.61■□□□□ 0.09
PTPN9P43378 AC018467.1-201ENST00000421581 717 ntTSL 5 BASIC15.61■□□□□ 0.09
PTPN9P43378 SFTPC-202ENST00000437090 773 ntTSL 3 BASIC15.61■□□□□ 0.09
PTPN9P43378 AC068898.1-201ENST00000440750 335 ntTSL 3 BASIC15.61■□□□□ 0.09
PTPN9P43378 AC007551.1-201ENST00000457394 519 ntBASIC15.61■□□□□ 0.09
PTPN9P43378 AAMDC-206ENST00000526415 579 ntAPPRIS P1 TSL 2 BASIC15.61■□□□□ 0.09
PTPN9P43378 AC116456.1-201ENST00000526646 815 ntTSL 3 BASIC15.61■□□□□ 0.09
PTPN9P43378 KRT90P-201ENST00000549264 1064 ntBASIC15.61■□□□□ 0.09
PTPN9P43378 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC15.61■□□□□ 0.09
PTPN9P43378 AC106886.1-201ENST00000568660 600 ntBASIC15.61■□□□□ 0.09
PTPN9P43378 ECM1P1-201ENST00000604092 1279 ntBASIC15.61■□□□□ 0.09
PTPN9P43378 PAX4-207ENST00000611453 1235 ntTSL 5 BASIC15.61■□□□□ 0.09
PTPN9P43378 AC244669.2-201ENST00000612320 853 ntBASIC15.61■□□□□ 0.09
PTPN9P43378 LARP4-220ENST00000615080 856 ntTSL 5 BASIC15.61■□□□□ 0.09
PTPN9P43378 HOGA1-203ENST00000370647 1999 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
PTPN9P43378 AC011840.2-201ENST00000563063 1520 ntBASIC15.61■□□□□ 0.09
PTPN9P43378 ZNF644-201ENST00000337393 5763 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
PTPN9P43378 DEPDC7-201ENST00000241051 1755 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
PTPN9P43378 AAMP-202ENST00000420660 1761 ntTSL 2 BASIC15.61■□□□□ 0.09
PTPN9P43378 MOCS1-201ENST00000340692 2747 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
PTPN9P43378 RPA3-201ENST00000223129 2020 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
PTPN9P43378 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
PTPN9P43378 TDRD6-201ENST00000316081 6817 ntAPPRIS P3 TSL 1 (best) BASIC15.61■□□□□ 0.09
PTPN9P43378 EIF4G1-203ENST00000350481 4990 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
PTPN9P43378 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC15.61■□□□□ 0.09
PTPN9P43378 PRSS8-201ENST00000317508 1872 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
PTPN9P43378 PYGM-202ENST00000377432 2611 ntTSL 2 BASIC15.61■□□□□ 0.09
PTPN9P43378 CALCOCO2-211ENST00000508679 1396 ntTSL 2 BASIC15.61■□□□□ 0.09
PTPN9P43378 HNRNPDL-208ENST00000621267 4139 ntAPPRIS P2 TSL 1 (best) BASIC15.61■□□□□ 0.09
PTPN9P43378 LSS-202ENST00000397728 4936 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
PTPN9P43378 GRID2IP-202ENST00000452113 3428 ntTSL 5 BASIC15.61■□□□□ 0.09
PTPN9P43378 MBNL1-202ENST00000282488 6458 ntTSL 5 BASIC15.61■□□□□ 0.09
PTPN9P43378 LINC00924-202ENST00000556053 2682 ntTSL 2 BASIC15.61■□□□□ 0.09
PTPN9P43378 RNF11-201ENST00000242719 3084 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
PTPN9P43378 LINC01285-201ENST00000412422 2289 ntTSL 2 BASIC15.6■□□□□ 0.09
PTPN9P43378 ANKRD23-201ENST00000318357 2597 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
PTPN9P43378 SCYL1-208ENST00000527009 2586 ntTSL 5 BASIC15.6■□□□□ 0.09
PTPN9P43378 KIAA1841-201ENST00000295031 3116 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
PTPN9P43378 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC15.6■□□□□ 0.09
PTPN9P43378 TOMM34-201ENST00000372813 2062 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
PTPN9P43378 CTCFL-210ENST00000481655 1512 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
PTPN9P43378 SFTA3-204ENST00000518529 1531 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
PTPN9P43378 TBC1D25-201ENST00000376771 4042 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
PTPN9P43378 TMEM201-202ENST00000340381 3776 ntAPPRIS P1 TSL 5 BASIC15.6■□□□□ 0.09
PTPN9P43378 FYCO1-205ENST00000535325 8578 ntAPPRIS ALT2 TSL 5 BASIC15.6■□□□□ 0.09
PTPN9P43378 PEX13-202ENST00000401576 1108 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
PTPN9P43378 ITPR1-AS1-201ENST00000412804 858 ntTSL 2 BASIC15.6■□□□□ 0.09
PTPN9P43378 ARSEP1-201ENST00000420443 635 ntBASIC15.6■□□□□ 0.09
PTPN9P43378 AL121983.1-201ENST00000424181 335 ntTSL 2 BASIC15.6■□□□□ 0.09
PTPN9P43378 GSAP-205ENST00000430584 600 ntTSL 5 BASIC15.6■□□□□ 0.09
PTPN9P43378 AC099552.1-201ENST00000431083 744 ntTSL 5 BASIC15.6■□□□□ 0.09
PTPN9P43378 FAM197Y7-201ENST00000432892 766 ntBASIC15.6■□□□□ 0.09
PTPN9P43378 AC072022.1-201ENST00000450760 1144 ntAPPRIS P1 TSL 3 BASIC15.6■□□□□ 0.09
PTPN9P43378 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC15.6■□□□□ 0.09
PTPN9P43378 AL391280.1-201ENST00000506969 1062 ntBASIC15.6■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 34.9 ms