Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 SUMO1-204ENST00000409181 784 ntTSL 3 BASIC16.88■□□□□ 0.29
CIITAP33076 SUMO1-207ENST00000409498 779 ntTSL 3 BASIC16.88■□□□□ 0.29
CIITAP33076 TISP43-201ENST00000409793 538 ntTSL 4 BASIC16.88■□□□□ 0.29
CIITAP33076 Z93015.1-201ENST00000451718 390 ntBASIC16.88■□□□□ 0.29
CIITAP33076 AC092944.1-202ENST00000487238 483 ntTSL 4 BASIC16.88■□□□□ 0.29
CIITAP33076 AC100850.1-201ENST00000506768 649 ntBASIC16.88■□□□□ 0.29
CIITAP33076 AC012574.2-201ENST00000520375 443 ntTSL 3 BASIC16.88■□□□□ 0.29
CIITAP33076 DPF3-210ENST00000556509 1138 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CIITAP33076 AL122035.1-201ENST00000556640 550 ntTSL 2 BASIC16.88■□□□□ 0.29
CIITAP33076 AF111167.2-202ENST00000558267 599 ntTSL 4 BASIC16.88■□□□□ 0.29
CIITAP33076 AC093525.1-201ENST00000569317 596 ntAPPRIS P1 TSL 3 BASIC16.88■□□□□ 0.29
CIITAP33076 KLK3-211ENST00000597483 810 ntTSL 2 BASIC16.88■□□□□ 0.29
CIITAP33076 AC008825.2-201ENST00000603374 718 ntBASIC16.88■□□□□ 0.29
CIITAP33076 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CIITAP33076 MLLT10-216ENST00000621220 381 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
CIITAP33076 AP001002.3-201ENST00000623482 206 ntBASIC16.88■□□□□ 0.29
CIITAP33076 ZNF711-201ENST00000276123 2887 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
CIITAP33076 RPH3AL-202ENST00000331302 2606 ntAPPRIS P2 TSL 2 BASIC16.88■□□□□ 0.29
CIITAP33076 TNKS1BP1-201ENST00000358252 5795 ntAPPRIS P2 TSL 1 (best) BASIC16.88■□□□□ 0.29
CIITAP33076 FZD4-201ENST00000531380 7383 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CIITAP33076 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CIITAP33076 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC16.88■□□□□ 0.29
CIITAP33076 ZNF252P-AS1-201ENST00000527067 3236 ntBASIC16.88■□□□□ 0.29
CIITAP33076 B9D1-209ENST00000477478 1353 ntTSL 3 BASIC16.88■□□□□ 0.29
CIITAP33076 AP003392.4-202ENST00000526453 1359 ntTSL 2 BASIC16.88■□□□□ 0.29
CIITAP33076 HYAL1-209ENST00000618175 2225 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
CIITAP33076 NFYA-202ENST00000353205 1660 ntTSL 5 BASIC16.88■□□□□ 0.29
CIITAP33076 MAGED2-201ENST00000218439 1958 ntAPPRIS P2 TSL 5 BASIC16.88■□□□□ 0.29
CIITAP33076 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CIITAP33076 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
CIITAP33076 MLST8-201ENST00000301724 1735 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
CIITAP33076 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC16.87■□□□□ 0.29
CIITAP33076 GCNT7-201ENST00000243913 2064 ntTSL 2 BASIC16.87■□□□□ 0.29
CIITAP33076 TXNDC2-206ENST00000611534 2066 ntAPPRIS ALT2 TSL 5 BASIC16.87■□□□□ 0.29
CIITAP33076 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC16.87■□□□□ 0.29
CIITAP33076 GLT1D1-201ENST00000281703 2725 ntTSL 2 BASIC16.87■□□□□ 0.29
CIITAP33076 BCAR3-210ENST00000539242 2114 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
CIITAP33076 P2RX5-208ENST00000552050 1536 ntTSL 2 BASIC16.87■□□□□ 0.29
CIITAP33076 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CIITAP33076 MSI2-202ENST00000322684 1860 ntAPPRIS ALT2 TSL 2 BASIC16.87■□□□□ 0.29
CIITAP33076 LINC00665-203ENST00000438368 1863 ntTSL 5 BASIC16.87■□□□□ 0.29
CIITAP33076 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC16.87■□□□□ 0.29
CIITAP33076 CYP1A1-203ENST00000395049 1594 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
CIITAP33076 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CIITAP33076 MSTO1-202ENST00000368341 2245 ntTSL 2 BASIC16.87■□□□□ 0.29
CIITAP33076 EMC4-201ENST00000249209 852 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
CIITAP33076 TREM2-203ENST00000373122 1012 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
CIITAP33076 ALG1L2-201ENST00000425059 969 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
CIITAP33076 ACTBP11-201ENST00000436287 1126 ntBASIC16.87■□□□□ 0.29
CIITAP33076 Z94721.1-201ENST00000444102 385 ntTSL 5 BASIC16.87■□□□□ 0.29
CIITAP33076 H2AFV-207ENST00000446531 1041 ntTSL 2 BASIC16.87■□□□□ 0.29
CIITAP33076 HSPB1P2-201ENST00000448722 546 ntBASIC16.87■□□□□ 0.29
CIITAP33076 KLF3-AS1-204ENST00000505240 567 ntTSL 4 BASIC16.87■□□□□ 0.29
CIITAP33076 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
CIITAP33076 CYBA-208ENST00000567174 1085 ntTSL 2 BASIC16.87■□□□□ 0.29
CIITAP33076 AC120498.3-201ENST00000568884 542 ntTSL 4 BASIC16.87■□□□□ 0.29
CIITAP33076 AC139099.3-201ENST00000572850 472 ntTSL 5 BASIC16.87■□□□□ 0.29
CIITAP33076 KLF3-AS1-207ENST00000620339 558 ntTSL 4 BASIC16.87■□□□□ 0.29
CIITAP33076 AC024941.2-201ENST00000625763 493 ntTSL 2 BASIC16.87■□□□□ 0.29
CIITAP33076 C11orf16-201ENST00000326053 1908 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CIITAP33076 SH3KBP1-201ENST00000379697 1944 ntTSL 5 BASIC16.87■□□□□ 0.29
CIITAP33076 C14orf180-203ENST00000557649 2551 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
CIITAP33076 AC011455.3-201ENST00000599996 1967 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
CIITAP33076 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
CIITAP33076 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC16.87■□□□□ 0.29
CIITAP33076 RABL2B-202ENST00000395590 2380 ntTSL 2 BASIC16.87■□□□□ 0.29
CIITAP33076 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CIITAP33076 PKD1P5-201ENST00000532415 10291 ntBASIC16.87■□□□□ 0.29
CIITAP33076 AC010547.4-201ENST00000561754 1378 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
CIITAP33076 NR2E3-203ENST00000621098 2064 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
CIITAP33076 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC16.87■□□□□ 0.29
CIITAP33076 ENDOV-204ENST00000518137 2815 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
CIITAP33076 AAMP-202ENST00000420660 1761 ntTSL 2 BASIC16.87■□□□□ 0.29
CIITAP33076 TNN-201ENST00000239462 5008 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
CIITAP33076 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CIITAP33076 PNPLA5-204ENST00000593866 2197 ntTSL 2 BASIC16.87■□□□□ 0.29
CIITAP33076 TMEM97-201ENST00000226230 2568 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CIITAP33076 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CIITAP33076 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC16.86■□□□□ 0.29
CIITAP33076 STOML1-204ENST00000541638 6336 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CIITAP33076 RHOXF1P3-203ENST00000640298 2668 ntTSL 5 BASIC16.86■□□□□ 0.29
CIITAP33076 DNAJC10-210ENST00000616986 5783 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
CIITAP33076 MAP2K5-201ENST00000178640 2347 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CIITAP33076 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CIITAP33076 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CIITAP33076 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CIITAP33076 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
CIITAP33076 FZR1-201ENST00000313639 1215 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
CIITAP33076 MUC1-202ENST00000338684 1107 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
CIITAP33076 MIR326-201ENST00000362220 95 ntBASIC16.86■□□□□ 0.29
CIITAP33076 LINC01694-201ENST00000424569 821 ntTSL 5 BASIC16.86■□□□□ 0.29
CIITAP33076 AP000350.4-201ENST00000433835 788 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
CIITAP33076 LINC01762-204ENST00000434879 436 ntTSL 2 BASIC16.86■□□□□ 0.29
CIITAP33076 DSCR3-207ENST00000476950 937 ntTSL 2 BASIC16.86■□□□□ 0.29
CIITAP33076 STARD4-205ENST00000505803 803 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
CIITAP33076 STARD4-207ENST00000509887 1186 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
CIITAP33076 RIT1-205ENST00000539040 919 ntTSL 2 BASIC16.86■□□□□ 0.29
CIITAP33076 RNF41-210ENST00000552244 716 ntTSL 3 BASIC16.86■□□□□ 0.29
CIITAP33076 AC136428.1-201ENST00000569103 349 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
CIITAP33076 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 34.6 ms