Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
COL6A3P12111 VSTM1-205ENST00000425006 608 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
COL6A3P12111 RPL18AP15-201ENST00000430258 517 ntBASIC15.12■□□□□ 0.01
COL6A3P12111 NAA40-205ENST00000539656 577 ntTSL 4 BASIC15.12■□□□□ 0.01
COL6A3P12111 CES1P2-201ENST00000566467 1242 ntBASIC15.12■□□□□ 0.01
COL6A3P12111 RN7SL524P-201ENST00000581152 300 ntBASIC15.12■□□□□ 0.01
COL6A3P12111 CT55-201ENST00000276241 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
COL6A3P12111 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
COL6A3P12111 AEN-201ENST00000332810 3117 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
COL6A3P12111 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
COL6A3P12111 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC15.12■□□□□ 0.01
COL6A3P12111 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
COL6A3P12111 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
COL6A3P12111 NOP14-AS1-201ENST00000503709 1616 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
COL6A3P12111 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
COL6A3P12111 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
COL6A3P12111 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
COL6A3P12111 APOBEC3A-201ENST00000249116 1444 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
COL6A3P12111 CD300LG-203ENST00000377203 1060 ntAPPRIS ALT2 TSL 2 BASIC15.12■□□□□ 0.01
COL6A3P12111 AC000078.1-201ENST00000420617 682 ntBASIC15.12■□□□□ 0.01
COL6A3P12111 HNRNPA1P21-201ENST00000424115 961 ntBASIC15.12■□□□□ 0.01
COL6A3P12111 ALDOAP1-201ENST00000491506 1078 ntBASIC15.12■□□□□ 0.01
COL6A3P12111 EHF-205ENST00000527935 557 ntTSL 2 BASIC15.12■□□□□ 0.01
COL6A3P12111 VENTXP3-201ENST00000546480 773 ntBASIC15.12■□□□□ 0.01
COL6A3P12111 FAM223B-202ENST00000598177 713 ntBASIC15.12■□□□□ 0.01
COL6A3P12111 FAM223A-202ENST00000625204 713 ntBASIC15.12■□□□□ 0.01
COL6A3P12111 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC15.12■□□□□ 0.01
COL6A3P12111 MS4A15-201ENST00000337911 1536 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
COL6A3P12111 OIT3-202ENST00000622652 1602 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
COL6A3P12111 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
COL6A3P12111 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
COL6A3P12111 TRPM3-205ENST00000361823 1260 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
COL6A3P12111 CDRT15L2-201ENST00000399044 1048 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
COL6A3P12111 AC091729.3-203ENST00000413706 674 ntTSL 5 BASIC15.12■□□□□ 0.01
COL6A3P12111 DMKN-211ENST00000436012 848 ntAPPRIS ALT2 TSL 2 BASIC15.12■□□□□ 0.01
COL6A3P12111 AC011247.2-201ENST00000457097 233 ntTSL 4 BASIC15.12■□□□□ 0.01
COL6A3P12111 IMMP1L-215ENST00000534812 612 ntTSL 2 BASIC15.12■□□□□ 0.01
COL6A3P12111 ASNA1-205ENST00000611688 1214 ntTSL 5 BASIC15.12■□□□□ 0.01
COL6A3P12111 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
COL6A3P12111 NAA60-203ENST00000414063 2619 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
COL6A3P12111 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC15.11■□□□□ 0.01
COL6A3P12111 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
COL6A3P12111 FAM226B-201ENST00000602508 1490 ntBASIC15.11■□□□□ 0.01
COL6A3P12111 BRD7P5-201ENST00000299197 1822 ntBASIC15.11■□□□□ 0.01
COL6A3P12111 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
COL6A3P12111 AC023090.2-201ENST00000625182 2110 ntBASIC15.11■□□□□ 0.01
COL6A3P12111 NAP1L1-226ENST00000552342 1526 ntTSL 5 BASIC15.11■□□□□ 0.01
COL6A3P12111 GALP-201ENST00000357330 938 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
COL6A3P12111 AL359649.1-202ENST00000375713 443 ntTSL 5 BASIC15.11■□□□□ 0.01
COL6A3P12111 GALP-202ENST00000440823 889 ntTSL 5 BASIC15.11■□□□□ 0.01
COL6A3P12111 AC099328.1-201ENST00000498809 1030 ntBASIC15.11■□□□□ 0.01
COL6A3P12111 C11orf58-207ENST00000525684 575 ntTSL 2 BASIC15.11■□□□□ 0.01
COL6A3P12111 C11orf58-209ENST00000528634 776 ntTSL 5 BASIC15.11■□□□□ 0.01
COL6A3P12111 KRT8P34-201ENST00000577607 1044 ntBASIC15.11■□□□□ 0.01
COL6A3P12111 MIR6165-201ENST00000614803 84 ntBASIC15.11■□□□□ 0.01
COL6A3P12111 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
COL6A3P12111 CEBPZOS-203ENST00000397226 1499 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
COL6A3P12111 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
COL6A3P12111 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC15.11■□□□□ 0.01
COL6A3P12111 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC15.11■□□□□ 0.01
COL6A3P12111 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
COL6A3P12111 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC15.11■□□□□ 0.01
COL6A3P12111 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
COL6A3P12111 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC15.11■□□□□ 0.01
COL6A3P12111 GABPB1-202ENST00000359031 1633 ntTSL 5 BASIC15.11■□□□□ 0.01
COL6A3P12111 SPINK2-201ENST00000248701 613 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
COL6A3P12111 PDZK1IP1-201ENST00000294338 846 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
COL6A3P12111 OAZ3-201ENST00000321531 851 ntTSL 5 BASIC15.11■□□□□ 0.01
COL6A3P12111 AIG1-203ENST00000367596 559 ntTSL 2 BASIC15.11■□□□□ 0.01
COL6A3P12111 Z69733.1-201ENST00000445990 632 ntTSL 3 BASIC15.11■□□□□ 0.01
COL6A3P12111 AL450346.2-201ENST00000495602 1024 ntBASIC15.11■□□□□ 0.01
COL6A3P12111 AL132994.1-201ENST00000554098 400 ntBASIC15.11■□□□□ 0.01
COL6A3P12111 AC087741.1-204ENST00000573935 646 ntTSL 3 BASIC15.11■□□□□ 0.01
COL6A3P12111 PSME3-213ENST00000592169 826 ntTSL 3 BASIC15.11■□□□□ 0.01
COL6A3P12111 RPL18A-204ENST00000599898 491 ntTSL 2 BASIC15.11■□□□□ 0.01
COL6A3P12111 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC15.11■□□□□ 0.01
COL6A3P12111 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
COL6A3P12111 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
COL6A3P12111 LINC00910-206ENST00000592135 2438 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
COL6A3P12111 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
COL6A3P12111 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
COL6A3P12111 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC15.11■□□□□ 0.01
COL6A3P12111 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
COL6A3P12111 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
COL6A3P12111 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
COL6A3P12111 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
COL6A3P12111 AC011284.1-201ENST00000427920 856 ntTSL 4 BASIC15.1■□□□□ 0.01
COL6A3P12111 CA5BP1-205ENST00000435806 1064 ntBASIC15.1■□□□□ 0.01
COL6A3P12111 TMEM14B-215ENST00000481240 1032 ntTSL 2 BASIC15.1■□□□□ 0.01
COL6A3P12111 RN7SL530P-201ENST00000485097 298 ntBASIC15.1■□□□□ 0.01
COL6A3P12111 RN7SL480P-201ENST00000581481 294 ntBASIC15.1■□□□□ 0.01
COL6A3P12111 SIGLEC22P-201ENST00000599104 714 ntBASIC15.1■□□□□ 0.01
COL6A3P12111 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
COL6A3P12111 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC15.1■□□□□ 0.01
COL6A3P12111 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC15.1■□□□□ 0.01
COL6A3P12111 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
COL6A3P12111 ZMIZ1-AS1-203ENST00000456353 2878 ntTSL 2 BASIC15.1■□□□□ 0.01
COL6A3P12111 AGGF1P1-201ENST00000509500 2073 ntBASIC15.1■□□□□ 0.01
COL6A3P12111 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
COL6A3P12111 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms