Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 AC114737.3-201ENST00000636708 570 ntTSL 4 BASIC13.75□□□□□ -0.21
HOXD4P09016 FECH-202ENST00000382873 2526 ntAPPRIS ALT2 TSL 2 BASIC13.75□□□□□ -0.21
HOXD4P09016 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC13.75□□□□□ -0.21
HOXD4P09016 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
HOXD4P09016 LINC01101-201ENST00000622953 1884 ntBASIC13.75□□□□□ -0.21
HOXD4P09016 MBD1-224ENST00000591416 4905 ntAPPRIS P3 TSL 5 BASIC13.75□□□□□ -0.21
HOXD4P09016 BICDL1-201ENST00000397558 3055 ntAPPRIS P1 TSL 5 BASIC13.75□□□□□ -0.21
HOXD4P09016 TCAIM-201ENST00000342649 3687 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
HOXD4P09016 CACNA2D3-202ENST00000415676 3661 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
HOXD4P09016 TSPOAP1-202ENST00000343736 5947 ntAPPRIS P3 TSL 1 (best) BASIC13.75□□□□□ -0.21
HOXD4P09016 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
HOXD4P09016 PXN-207ENST00000536957 4112 ntAPPRIS ALT2 TSL 2 BASIC13.75□□□□□ -0.21
HOXD4P09016 NXPH1-201ENST00000405863 2921 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
HOXD4P09016 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
HOXD4P09016 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC13.75□□□□□ -0.21
HOXD4P09016 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC13.75□□□□□ -0.21
HOXD4P09016 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC13.75□□□□□ -0.21
HOXD4P09016 GRK6-203ENST00000393576 2792 ntTSL 5 BASIC13.75□□□□□ -0.21
HOXD4P09016 ARF6-201ENST00000298316 3865 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
HOXD4P09016 TRMO-203ENST00000375119 1647 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
HOXD4P09016 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC13.75□□□□□ -0.21
HOXD4P09016 PDE7A-203ENST00000401827 3673 ntAPPRIS ALT1 TSL 1 (best) BASIC13.75□□□□□ -0.21
HOXD4P09016 LZTS1-202ENST00000381569 5706 ntAPPRIS P1 TSL 5 BASIC13.75□□□□□ -0.21
HOXD4P09016 PDE4C-207ENST00000594617 4655 ntAPPRIS P3 TSL 1 (best) BASIC13.75□□□□□ -0.21
HOXD4P09016 PDE8B-202ENST00000333194 2572 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
HOXD4P09016 HACE1-201ENST00000262903 4576 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
HOXD4P09016 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
HOXD4P09016 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC13.74□□□□□ -0.21
HOXD4P09016 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC13.74□□□□□ -0.21
HOXD4P09016 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC13.74□□□□□ -0.21
HOXD4P09016 C21orf58-204ENST00000397682 2941 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
HOXD4P09016 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC13.74□□□□□ -0.21
HOXD4P09016 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC13.74□□□□□ -0.21
HOXD4P09016 TMUB2-202ENST00000357984 1921 ntAPPRIS P3 TSL 1 (best) BASIC13.74□□□□□ -0.21
HOXD4P09016 STK35-201ENST00000381482 6685 ntAPPRIS P1 TSL 5 BASIC13.74□□□□□ -0.21
HOXD4P09016 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
HOXD4P09016 TCF7-218ENST00000520958 1408 ntTSL 2 BASIC13.74□□□□□ -0.21
HOXD4P09016 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC13.74□□□□□ -0.21
HOXD4P09016 RB1CC1-202ENST00000435644 6614 ntAPPRIS ALT1 TSL 1 (best) BASIC13.74□□□□□ -0.21
HOXD4P09016 COL6A4P2-202ENST00000504443 2753 ntBASIC13.74□□□□□ -0.21
HOXD4P09016 CICP23-201ENST00000605013 2741 ntBASIC13.74□□□□□ -0.21
HOXD4P09016 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC13.74□□□□□ -0.21
HOXD4P09016 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
HOXD4P09016 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC13.74□□□□□ -0.21
HOXD4P09016 NORAD-201ENST00000565493 5339 ntBASIC13.74□□□□□ -0.21
HOXD4P09016 AHCYP2-201ENST00000430630 1300 ntBASIC13.74□□□□□ -0.21
HOXD4P09016 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
HOXD4P09016 KCNT1-214ENST00000631073 3948 ntAPPRIS ALT2 TSL 5 BASIC13.74□□□□□ -0.21
HOXD4P09016 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC13.74□□□□□ -0.21
HOXD4P09016 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
HOXD4P09016 FLI1-207ENST00000534087 3859 ntTSL 2 BASIC13.74□□□□□ -0.21
HOXD4P09016 C14orf180-203ENST00000557649 2551 ntAPPRIS P3 TSL 1 (best) BASIC13.74□□□□□ -0.21
HOXD4P09016 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
HOXD4P09016 CMA1-202ENST00000250378 937 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
HOXD4P09016 CFLAR-203ENST00000341222 1283 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
HOXD4P09016 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC13.74□□□□□ -0.21
HOXD4P09016 TNFAIP8L2-201ENST00000368910 1178 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
HOXD4P09016 GABARAPL2-201ENST00000037243 1002 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
HOXD4P09016 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC13.74□□□□□ -0.21
HOXD4P09016 DYNC1I1-203ENST00000413338 958 ntTSL 2 BASIC13.74□□□□□ -0.21
HOXD4P09016 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC13.74□□□□□ -0.21
HOXD4P09016 PFN2-205ENST00000461868 613 ntTSL 2 BASIC13.74□□□□□ -0.21
HOXD4P09016 AC099548.2-209ENST00000480264 625 ntBASIC13.74□□□□□ -0.21
HOXD4P09016 SNHG12-210ENST00000483436 682 ntTSL 3 BASIC13.74□□□□□ -0.21
HOXD4P09016 KCNT1-207ENST00000487664 3845 ntAPPRIS ALT2 TSL 5 BASIC13.74□□□□□ -0.21
HOXD4P09016 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC13.74□□□□□ -0.21
HOXD4P09016 LINC02449-203ENST00000536034 451 ntTSL 3 BASIC13.74□□□□□ -0.21
HOXD4P09016 UEVLD-212ENST00000541984 755 ntTSL 3 BASIC13.74□□□□□ -0.21
HOXD4P09016 AC009133.1-202ENST00000563806 494 ntTSL 3 BASIC13.74□□□□□ -0.21
HOXD4P09016 AP000439.4-201ENST00000567742 664 ntTSL 3 BASIC13.74□□□□□ -0.21
HOXD4P09016 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC13.74□□□□□ -0.21
HOXD4P09016 AC129510.1-201ENST00000579979 555 ntTSL 3 BASIC13.74□□□□□ -0.21
HOXD4P09016 TUBB6-210ENST00000590967 430 ntTSL 3 BASIC13.74□□□□□ -0.21
HOXD4P09016 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC13.74□□□□□ -0.21
HOXD4P09016 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC13.74□□□□□ -0.21
HOXD4P09016 FYCO1-205ENST00000535325 8578 ntAPPRIS ALT2 TSL 5 BASIC13.74□□□□□ -0.21
HOXD4P09016 KDM3A-201ENST00000312912 4886 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
HOXD4P09016 SPRY4-202ENST00000434127 2379 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
HOXD4P09016 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
HOXD4P09016 RAD51D-203ENST00000394589 2287 ntAPPRIS P1 TSL 5 BASIC13.74□□□□□ -0.21
HOXD4P09016 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC13.74□□□□□ -0.21
HOXD4P09016 C15orf52-206ENST00000559313 3022 ntAPPRIS P2 TSL 5 BASIC13.74□□□□□ -0.21
HOXD4P09016 RNF150-201ENST00000306799 4535 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
HOXD4P09016 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC13.74□□□□□ -0.21
HOXD4P09016 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
HOXD4P09016 DBF4-201ENST00000265728 3907 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
HOXD4P09016 ATP6AP2-211ENST00000636196 1403 ntAPPRIS ALT2 TSL 5 BASIC13.73□□□□□ -0.21
HOXD4P09016 MAGEA8-204ENST00000535454 2112 ntAPPRIS P1 TSL 3 BASIC13.73□□□□□ -0.21
HOXD4P09016 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
HOXD4P09016 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC13.73□□□□□ -0.21
HOXD4P09016 CLDND1-215ENST00000507874 1380 ntTSL 3 BASIC13.73□□□□□ -0.21
HOXD4P09016 BHMG1-201ENST00000457052 2749 ntAPPRIS P1 TSL 5 BASIC13.73□□□□□ -0.21
HOXD4P09016 SLC37A4-216ENST00000538950 2032 ntTSL 5 BASIC13.73□□□□□ -0.21
HOXD4P09016 ASTN2-206ENST00000361477 4001 ntTSL 5 BASIC13.73□□□□□ -0.21
HOXD4P09016 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC13.73□□□□□ -0.21
HOXD4P09016 UBTF-201ENST00000302904 4997 ntAPPRIS P1 TSL 2 BASIC13.73□□□□□ -0.21
HOXD4P09016 KCNAB2-212ENST00000458166 1336 ntTSL 2 BASIC13.73□□□□□ -0.21
HOXD4P09016 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC13.73□□□□□ -0.21
HOXD4P09016 MRC2-202ENST00000446119 3201 ntTSL 2 BASIC13.73□□□□□ -0.21
HOXD4P09016 LINC00552-201ENST00000625151 2579 ntBASIC13.73□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 41.8 ms