Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 FRMD5-201ENST00000402883 4091 ntTSL 5 BASIC14.67□□□□□ -0.06
LDLRP01130 ZNF586-202ENST00000396150 1977 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
LDLRP01130 LINC01107-201ENST00000446979 1975 ntTSL 2 BASIC14.67□□□□□ -0.06
LDLRP01130 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
LDLRP01130 CDCA2-201ENST00000330560 3731 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
LDLRP01130 KCNT1-209ENST00000490355 3708 ntAPPRIS ALT2 TSL 5 BASIC14.67□□□□□ -0.06
LDLRP01130 SEPT6-204ENST00000360156 2609 ntAPPRIS ALT1 TSL 1 (best) BASIC14.67□□□□□ -0.06
LDLRP01130 PAPSS2-201ENST00000361175 3949 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
LDLRP01130 TLN1-201ENST00000314888 8823 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
LDLRP01130 MPI-203ENST00000535694 1523 ntTSL 2 BASIC14.67□□□□□ -0.06
LDLRP01130 AICDA-201ENST00000229335 2819 ntAPPRIS P2 TSL 1 (best) BASIC14.67□□□□□ -0.06
LDLRP01130 ZNF354B-201ENST00000322434 2802 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
LDLRP01130 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
LDLRP01130 ZNF559-202ENST00000393883 5095 ntAPPRIS P3 TSL 2 BASIC14.67□□□□□ -0.06
LDLRP01130 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC14.67□□□□□ -0.06
LDLRP01130 HSPA7-201ENST00000445535 1927 ntBASIC14.67□□□□□ -0.06
LDLRP01130 AC138969.2-201ENST00000532739 9932 ntBASIC14.67□□□□□ -0.06
LDLRP01130 RAB11FIP1-201ENST00000287263 6253 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
LDLRP01130 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
LDLRP01130 FAM86MP-201ENST00000340703 885 ntBASIC14.67□□□□□ -0.06
LDLRP01130 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
LDLRP01130 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
LDLRP01130 AC004987.2-201ENST00000395959 1148 ntBASIC14.67□□□□□ -0.06
LDLRP01130 OSM-203ENST00000403463 464 ntTSL 3 BASIC14.67□□□□□ -0.06
LDLRP01130 AL157832.1-201ENST00000428273 495 ntTSL 2 BASIC14.67□□□□□ -0.06
LDLRP01130 TTTY23B-201ENST00000442790 549 ntBASIC14.67□□□□□ -0.06
LDLRP01130 RHOXF1P1-201ENST00000454625 772 ntTSL 3 BASIC14.67□□□□□ -0.06
LDLRP01130 RN7SL837P-201ENST00000463010 287 ntBASIC14.67□□□□□ -0.06
LDLRP01130 FAM162A-202ENST00000469967 1015 ntTSL 2 BASIC14.67□□□□□ -0.06
LDLRP01130 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
LDLRP01130 DOC2GP-202ENST00000514950 1163 ntBASIC14.67□□□□□ -0.06
LDLRP01130 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC14.67□□□□□ -0.06
LDLRP01130 AC092552.1-201ENST00000547243 906 ntBASIC14.67□□□□□ -0.06
LDLRP01130 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
LDLRP01130 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC14.67□□□□□ -0.06
LDLRP01130 AL450472.2-201ENST00000603663 1156 ntBASIC14.67□□□□□ -0.06
LDLRP01130 ACER2-201ENST00000340967 2238 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
LDLRP01130 PADI2-202ENST00000375486 4345 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
LDLRP01130 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC14.67□□□□□ -0.06
LDLRP01130 CXorf36-201ENST00000377934 2513 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
LDLRP01130 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC14.67□□□□□ -0.06
LDLRP01130 ZBTB17-202ENST00000375743 2745 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
LDLRP01130 ZSWIM8-221ENST00000604729 6075 ntAPPRIS ALT1 TSL 5 BASIC14.67□□□□□ -0.06
LDLRP01130 MLLT10-201ENST00000307729 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
LDLRP01130 CNOT10-201ENST00000328834 2815 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
LDLRP01130 ZNF219-203ENST00000451119 2918 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
LDLRP01130 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC14.67□□□□□ -0.06
LDLRP01130 TDRD10-201ENST00000368480 1776 ntAPPRIS ALT2 TSL 2 BASIC14.67□□□□□ -0.06
LDLRP01130 AC136759.1-202ENST00000530858 2194 ntBASIC14.67□□□□□ -0.06
LDLRP01130 UNQ6494-202ENST00000617436 2163 ntTSL 2 BASIC14.67□□□□□ -0.06
LDLRP01130 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC14.67□□□□□ -0.06
LDLRP01130 UNC5A-201ENST00000329542 3812 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
LDLRP01130 PLCB3-202ENST00000325234 3946 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
LDLRP01130 KYAT1-205ENST00000436267 2487 ntTSL 2 BASIC14.67□□□□□ -0.06
LDLRP01130 DFNA5-201ENST00000342947 2590 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
LDLRP01130 RNF123-202ENST00000432042 2670 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
LDLRP01130 EBLN3P-202ENST00000625445 4520 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
LDLRP01130 SLC26A1-201ENST00000361661 3660 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
LDLRP01130 ARRDC4-201ENST00000268042 4072 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
LDLRP01130 STUM-202ENST00000366789 4093 ntAPPRIS ALT1 TSL 5 BASIC14.66□□□□□ -0.06
LDLRP01130 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
LDLRP01130 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC14.66□□□□□ -0.06
LDLRP01130 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC14.66□□□□□ -0.06
LDLRP01130 FOXO1B-201ENST00000504678 1527 ntBASIC14.66□□□□□ -0.06
LDLRP01130 REXO1L6P-201ENST00000603433 1515 ntBASIC14.66□□□□□ -0.06
LDLRP01130 SLC25A18-201ENST00000327451 2244 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
LDLRP01130 PRMT7-202ENST00000441236 2204 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
LDLRP01130 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
LDLRP01130 YME1L1-202ENST00000375972 2517 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
LDLRP01130 PDPR-202ENST00000398122 2734 ntTSL 2 BASIC14.66□□□□□ -0.06
LDLRP01130 C21orf58-202ENST00000397679 2900 ntAPPRIS ALT2 TSL 2 BASIC14.66□□□□□ -0.06
LDLRP01130 PPIL6-202ENST00000424445 4031 ntTSL 5 BASIC14.66□□□□□ -0.06
LDLRP01130 SYMPK-213ENST00000599460 5449 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
LDLRP01130 SEZ6L-209ENST00000529632 6534 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
LDLRP01130 PCDHGB8P-201ENST00000502926 1973 ntBASIC14.66□□□□□ -0.06
LDLRP01130 PORCN-201ENST00000326194 1755 ntAPPRIS P4 TSL 1 (best) BASIC14.66□□□□□ -0.06
LDLRP01130 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC14.66□□□□□ -0.06
LDLRP01130 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
LDLRP01130 SEZ6-203ENST00000360295 4306 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.06
LDLRP01130 RPF1-202ENST00000370656 724 ntTSL 2 BASIC14.66□□□□□ -0.06
LDLRP01130 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC14.66□□□□□ -0.06
LDLRP01130 RPL5P21-201ENST00000404620 815 ntBASIC14.66□□□□□ -0.06
LDLRP01130 SUMF2-205ENST00000413756 1171 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.06
LDLRP01130 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC14.66□□□□□ -0.06
LDLRP01130 AC119751.2-201ENST00000504529 210 ntBASIC14.66□□□□□ -0.06
LDLRP01130 AP005482.1-201ENST00000563722 1273 ntBASIC14.66□□□□□ -0.06
LDLRP01130 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC14.66□□□□□ -0.06
LDLRP01130 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC14.66□□□□□ -0.06
LDLRP01130 AC135178.3-201ENST00000583963 531 ntTSL 4 BASIC14.66□□□□□ -0.06
LDLRP01130 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
LDLRP01130 AC099568.2-201ENST00000609194 695 ntBASIC14.66□□□□□ -0.06
LDLRP01130 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC14.66□□□□□ -0.06
LDLRP01130 BVES-201ENST00000314641 5567 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
LDLRP01130 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
LDLRP01130 MRC2-202ENST00000446119 3201 ntTSL 2 BASIC14.66□□□□□ -0.06
LDLRP01130 VPS9D1-201ENST00000389386 2748 ntAPPRIS P2 TSL 1 (best) BASIC14.66□□□□□ -0.06
LDLRP01130 STAT1-203ENST00000392323 2723 ntAPPRIS ALT1 TSL 2 BASIC14.66□□□□□ -0.06
LDLRP01130 ARHGEF7-201ENST00000218789 5233 ntTSL 5 BASIC14.66□□□□□ -0.06
LDLRP01130 DUS4L-201ENST00000265720 2220 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
LDLRP01130 TNIP1-214ENST00000522226 2238 ntAPPRIS P3 TSL 2 BASIC14.66□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 47.6 ms