Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 HTATIP2-202ENST00000421577 886 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
NPHP4O75161 NSD2-209ENST00000436793 835 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
NPHP4O75161 AC128689.1-202ENST00000459861 827 ntTSL 3 BASIC20.54■□□□□ 0.88
NPHP4O75161 AC006529.1-201ENST00000459978 637 ntBASIC20.54■□□□□ 0.88
NPHP4O75161 RN7SL288P-201ENST00000490496 291 ntBASIC20.54■□□□□ 0.88
NPHP4O75161 RN7SL767P-201ENST00000493013 295 ntBASIC20.54■□□□□ 0.88
NPHP4O75161 NUDCD2-202ENST00000517501 448 ntTSL 5 BASIC20.54■□□□□ 0.88
NPHP4O75161 ADM-203ENST00000525063 867 ntAPPRIS P1 TSL 3 BASIC20.54■□□□□ 0.88
NPHP4O75161 RBM4-211ENST00000530235 1011 ntTSL 3 BASIC20.54■□□□□ 0.88
NPHP4O75161 F11R-204ENST00000537746 1245 ntTSL 2 BASIC20.54■□□□□ 0.88
NPHP4O75161 LINC01154-201ENST00000548617 454 ntTSL 3 BASIC20.54■□□□□ 0.88
NPHP4O75161 PLA2G15-209ENST00000566188 1203 ntTSL 2 BASIC20.54■□□□□ 0.88
NPHP4O75161 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
NPHP4O75161 CR382285.1-201ENST00000625012 1485 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
NPHP4O75161 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
NPHP4O75161 PSMG2-201ENST00000317615 1686 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
NPHP4O75161 SMYD1-203ENST00000444564 1816 ntTSL 5 BASIC20.54■□□□□ 0.88
NPHP4O75161 AC105250.1-201ENST00000509378 2057 ntBASIC20.54■□□□□ 0.88
NPHP4O75161 AP000845.1-201ENST00000581677 2131 ntBASIC20.54■□□□□ 0.88
NPHP4O75161 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC20.54■□□□□ 0.88
NPHP4O75161 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
NPHP4O75161 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC20.54■□□□□ 0.88
NPHP4O75161 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
NPHP4O75161 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
NPHP4O75161 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
NPHP4O75161 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
NPHP4O75161 MRM2-201ENST00000242257 1601 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
NPHP4O75161 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
NPHP4O75161 HIST1H2BF-201ENST00000356530 1196 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
NPHP4O75161 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
NPHP4O75161 COLEC11-204ENST00000402794 1134 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
NPHP4O75161 HTR3E-203ENST00000425359 1326 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
NPHP4O75161 UBOX5-AS1-201ENST00000446537 1792 ntTSL 2 BASIC20.53■□□□□ 0.88
NPHP4O75161 ARMC8-213ENST00000470821 1656 ntTSL 5 BASIC20.53■□□□□ 0.88
NPHP4O75161 BCL2L12P1-201ENST00000508390 733 ntBASIC20.53■□□□□ 0.88
NPHP4O75161 PAX5-210ENST00000520281 969 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
NPHP4O75161 KRT18P37-201ENST00000520711 1282 ntBASIC20.53■□□□□ 0.88
NPHP4O75161 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
NPHP4O75161 AC079174.1-201ENST00000552486 312 ntTSL 3 BASIC20.53■□□□□ 0.88
NPHP4O75161 AC023968.2-201ENST00000560593 1049 ntBASIC20.53■□□□□ 0.88
NPHP4O75161 RAB37-216ENST00000613645 1653 ntAPPRIS ALT1 TSL 1 (best) BASIC20.53■□□□□ 0.88
NPHP4O75161 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC20.53■□□□□ 0.88
NPHP4O75161 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
NPHP4O75161 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
NPHP4O75161 MRPS10-201ENST00000053468 2110 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
NPHP4O75161 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC20.53■□□□□ 0.88
NPHP4O75161 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC20.53■□□□□ 0.88
NPHP4O75161 ATP5A1-201ENST00000282050 1945 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
NPHP4O75161 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC20.53■□□□□ 0.88
NPHP4O75161 AAMP-202ENST00000420660 1761 ntTSL 2 BASIC20.53■□□□□ 0.88
NPHP4O75161 SERPINA1-209ENST00000449399 1559 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
NPHP4O75161 TMEM9-202ENST00000367332 1544 ntAPPRIS ALT1 TSL 2 BASIC20.53■□□□□ 0.88
NPHP4O75161 F10-201ENST00000375551 1509 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
NPHP4O75161 ENDOU-203ENST00000545824 1513 ntTSL 2 BASIC20.53■□□□□ 0.88
NPHP4O75161 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC20.53■□□□□ 0.88
NPHP4O75161 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC20.53■□□□□ 0.88
NPHP4O75161 KCNK18-201ENST00000334549 1155 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
NPHP4O75161 LST1-204ENST00000376086 554 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
NPHP4O75161 AC103702.2-203ENST00000425510 379 ntTSL 5 BASIC20.53■□□□□ 0.88
NPHP4O75161 AL512599.1-201ENST00000430724 685 ntBASIC20.53■□□□□ 0.88
NPHP4O75161 TIMP1-205ENST00000456754 1095 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
NPHP4O75161 EIF5A2-205ENST00000487522 565 ntTSL 3 BASIC20.53■□□□□ 0.88
NPHP4O75161 AC108474.1-201ENST00000507776 421 ntTSL 3 BASIC20.53■□□□□ 0.88
NPHP4O75161 AC090152.1-203ENST00000517898 1106 ntTSL 2 BASIC20.53■□□□□ 0.88
NPHP4O75161 WDYHV1-206ENST00000523356 869 ntTSL 3 BASIC20.53■□□□□ 0.88
NPHP4O75161 AC125603.3-201ENST00000550742 486 ntTSL 3 BASIC20.53■□□□□ 0.88
NPHP4O75161 AC139099.2-201ENST00000572343 641 ntTSL 3 BASIC20.53■□□□□ 0.88
NPHP4O75161 AC023389.1-201ENST00000577846 576 ntTSL 4 BASIC20.53■□□□□ 0.88
NPHP4O75161 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
NPHP4O75161 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC20.52■□□□□ 0.88
NPHP4O75161 AC024909.3-201ENST00000611513 2257 ntBASIC20.52■□□□□ 0.88
NPHP4O75161 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
NPHP4O75161 GK-204ENST00000378945 2063 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
NPHP4O75161 C3orf52-202ENST00000431717 2054 ntAPPRIS ALT2 TSL 2 BASIC20.52■□□□□ 0.88
NPHP4O75161 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
NPHP4O75161 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC20.52■□□□□ 0.88
NPHP4O75161 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC20.52■□□□□ 0.88
NPHP4O75161 ADI1-201ENST00000327435 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
NPHP4O75161 RCC1-201ENST00000373831 1577 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
NPHP4O75161 ARRB2-218ENST00000575877 1579 ntTSL 5 BASIC20.52■□□□□ 0.88
NPHP4O75161 AC138761.4-201ENST00000578881 1514 ntTSL 3 BASIC20.52■□□□□ 0.88
NPHP4O75161 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
NPHP4O75161 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
NPHP4O75161 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
NPHP4O75161 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
NPHP4O75161 DAD1-201ENST00000250498 731 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
NPHP4O75161 IL17B-201ENST00000261796 696 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
NPHP4O75161 MRPL33-201ENST00000296102 518 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
NPHP4O75161 PIFO-201ENST00000369737 746 ntTSL 2 BASIC20.52■□□□□ 0.87
NPHP4O75161 MRPL33-202ENST00000379666 404 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
NPHP4O75161 TEX33-201ENST00000381821 978 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.87
NPHP4O75161 TRBV5-7-201ENST00000390378 343 ntAPPRIS P1 BASIC20.52■□□□□ 0.87
NPHP4O75161 GAS5-209ENST00000430245 723 ntTSL 3 BASIC20.52■□□□□ 0.87
NPHP4O75161 MUSTN1-202ENST00000486659 622 ntTSL 2 BASIC20.52■□□□□ 0.87
NPHP4O75161 PFN2-212ENST00000490975 858 ntTSL 4 BASIC20.52■□□□□ 0.87
NPHP4O75161 AC132803.1-201ENST00000504204 493 ntTSL 2 BASIC20.52■□□□□ 0.87
NPHP4O75161 BCRP4-201ENST00000506079 804 ntBASIC20.52■□□□□ 0.87
NPHP4O75161 LINC00824-204ENST00000520766 597 ntTSL 5 BASIC20.52■□□□□ 0.87
NPHP4O75161 RBFOX3-206ENST00000582043 1143 ntTSL 5 BASIC20.52■□□□□ 0.87
NPHP4O75161 RN7SL121P-201ENST00000584223 273 ntBASIC20.52■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 36.3 ms