Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 TSC22D3-204ENST00000372384 2199 ntTSL 2 BASIC15.09■□□□□ 0.01
SHOX2O60902 CRISPLD2-209ENST00000567845 2178 ntAPPRIS ALT1 TSL 5 BASIC15.09■□□□□ 0.01
SHOX2O60902 OIT3-202ENST00000622652 1602 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
SHOX2O60902 DPYSL3-201ENST00000343218 5476 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
SHOX2O60902 SGK2-203ENST00000373092 1906 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
SHOX2O60902 POC5-202ENST00000428202 2229 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
SHOX2O60902 SECISBP2-202ENST00000375807 3462 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
SHOX2O60902 RASGRF1-203ENST00000558480 6237 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
SHOX2O60902 POLRMT-202ENST00000588649 3835 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
SHOX2O60902 B3GAT1-202ENST00000392580 3522 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
SHOX2O60902 PAK4-208ENST00000599386 5735 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
SHOX2O60902 HSPA8P5-201ENST00000456928 2069 ntBASIC15.08■□□□□ 0.01
SHOX2O60902 PHLDA1-203ENST00000619060 5913 ntAPPRIS P2 TSL 1 (best) BASIC15.08■□□□□ 0.01
SHOX2O60902 ENO2-201ENST00000229277 2423 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
SHOX2O60902 METAP1D-201ENST00000315796 3419 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
SHOX2O60902 APBA2-212ENST00000561069 3138 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0.01
SHOX2O60902 TSPAN31-201ENST00000257910 1849 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
SHOX2O60902 AC215219.1-201ENST00000400706 1817 ntBASIC15.08■□□□□ 0.01
SHOX2O60902 ZBTB20-206ENST00000464560 2816 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
SHOX2O60902 SLC4A7-213ENST00000454389 4159 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0.01
SHOX2O60902 POLG-201ENST00000268124 4500 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
SHOX2O60902 CILP2-202ENST00000586018 4234 ntAPPRIS ALT1 TSL 2 BASIC15.08■□□□□ 0.01
SHOX2O60902 PAM-207ENST00000455264 2898 ntTSL 1 (best) BASIC15.08■□□□□ 0.01
SHOX2O60902 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC15.08■□□□□ 0.01
SHOX2O60902 AATBC-203ENST00000448247 1889 ntTSL 2 BASIC15.08■□□□□ 0.01
SHOX2O60902 PRDM16-206ENST00000511072 4282 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0
SHOX2O60902 ANKZF1-201ENST00000323348 2579 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
SHOX2O60902 NCSTN-201ENST00000294785 2936 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
SHOX2O60902 SHROOM2-201ENST00000380913 7447 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
SHOX2O60902 C1S-202ENST00000360817 2635 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
SHOX2O60902 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC15.08■□□□□ 0
SHOX2O60902 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
SHOX2O60902 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC15.08■□□□□ 0
SHOX2O60902 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC15.08■□□□□ 0
SHOX2O60902 HDAC2-AS2-213ENST00000520891 603 ntTSL 4 BASIC15.08■□□□□ 0
SHOX2O60902 AC105233.2-201ENST00000523697 349 ntBASIC15.08■□□□□ 0
SHOX2O60902 AF228730.5-201ENST00000530288 346 ntBASIC15.08■□□□□ 0
SHOX2O60902 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC15.08■□□□□ 0
SHOX2O60902 ZNF843-202ENST00000564218 3816 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0
SHOX2O60902 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC15.08■□□□□ 0
SHOX2O60902 AC025181.2-201ENST00000606994 802 ntBASIC15.08■□□□□ 0
SHOX2O60902 BHLHE40-AS1-204ENST00000620618 2355 ntTSL 2 BASIC15.08■□□□□ 0
SHOX2O60902 PTPRU-205ENST00000460170 5337 ntTSL 1 (best) BASIC15.08■□□□□ 0
SHOX2O60902 UNC5CL-201ENST00000244565 3136 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
SHOX2O60902 SLC5A4-201ENST00000266086 2030 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
SHOX2O60902 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC15.08■□□□□ 0
SHOX2O60902 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
SHOX2O60902 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC15.08■□□□□ 0
SHOX2O60902 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC15.08■□□□□ 0
SHOX2O60902 CCDC127-201ENST00000296824 9342 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
SHOX2O60902 MIR497HG-202ENST00000572453 3838 ntBASIC15.08■□□□□ 0
SHOX2O60902 AC107375.1-201ENST00000564464 2231 ntBASIC15.08■□□□□ 0
SHOX2O60902 TUBGCP3-201ENST00000261965 3899 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
SHOX2O60902 EML4-201ENST00000318522 5549 ntAPPRIS P3 TSL 1 (best) BASIC15.08■□□□□ 0
SHOX2O60902 TRDMT1-203ENST00000377799 3527 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
SHOX2O60902 SMOC2-202ENST00000356284 3117 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
SHOX2O60902 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
SHOX2O60902 AC106818.1-201ENST00000623223 3242 ntBASIC15.07■□□□□ 0
SHOX2O60902 ENDOU-203ENST00000545824 1513 ntTSL 2 BASIC15.07■□□□□ 0
SHOX2O60902 AC067750.1-201ENST00000608826 6545 ntBASIC15.07■□□□□ 0
SHOX2O60902 BAIAP3-216ENST00000628027 4732 ntTSL 5 BASIC15.07■□□□□ 0
SHOX2O60902 XRRA1-202ENST00000340360 5681 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
SHOX2O60902 AC015921.1-201ENST00000574885 2546 ntTSL 1 (best) BASIC15.07■□□□□ 0
SHOX2O60902 FAM86B1-203ENST00000448228 2096 ntAPPRIS P2 TSL 5 BASIC15.07■□□□□ 0
SHOX2O60902 SELPLG-202ENST00000388962 1613 ntAPPRIS ALT2 TSL 5 BASIC15.07■□□□□ 0
SHOX2O60902 STK25-235ENST00000543554 2556 ntTSL 2 BASIC15.07■□□□□ 0
SHOX2O60902 AXL-203ENST00000593513 2557 ntTSL 1 (best) BASIC15.07■□□□□ 0
SHOX2O60902 STAG3L2-201ENST00000426587 2130 ntTSL 2 BASIC15.07■□□□□ 0
SHOX2O60902 MYADML-201ENST00000474610 2147 ntBASIC15.07■□□□□ 0
SHOX2O60902 FIBCD1-204ENST00000448616 3119 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
SHOX2O60902 CACNA1G-205ENST00000360761 7497 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
SHOX2O60902 RNF43-202ENST00000577625 2198 ntTSL 2 BASIC15.07■□□□□ 0
SHOX2O60902 NISCH-212ENST00000488380 3168 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
SHOX2O60902 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC15.07■□□□□ 0
SHOX2O60902 CTTN-202ENST00000346329 3272 ntAPPRIS P3 TSL 1 (best) BASIC15.07■□□□□ 0
SHOX2O60902 DDC-AS1-201ENST00000454521 1776 ntTSL 2 BASIC15.07■□□□□ 0
SHOX2O60902 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC15.07■□□□□ 0
SHOX2O60902 PCDHB14-201ENST00000239449 4828 ntAPPRIS P1 BASIC15.07■□□□□ 0
SHOX2O60902 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
SHOX2O60902 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC15.07■□□□□ 0
SHOX2O60902 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC15.07■□□□□ 0
SHOX2O60902 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC15.07■□□□□ 0
SHOX2O60902 AC016730.1-201ENST00000420828 832 ntTSL 2 BASIC15.07■□□□□ 0
SHOX2O60902 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC15.07■□□□□ 0
SHOX2O60902 AF186996.4-201ENST00000467186 377 ntBASIC15.07■□□□□ 0
SHOX2O60902 FXR1-221ENST00000491674 365 ntTSL 2 BASIC15.07■□□□□ 0
SHOX2O60902 KRT18P56-201ENST00000507275 550 ntBASIC15.07■□□□□ 0
SHOX2O60902 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC15.07■□□□□ 0
SHOX2O60902 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC15.07■□□□□ 0
SHOX2O60902 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC15.07■□□□□ 0
SHOX2O60902 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC15.07■□□□□ 0
SHOX2O60902 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC15.07■□□□□ 0
SHOX2O60902 AL049840.3-201ENST00000602669 611 ntBASIC15.07■□□□□ 0
SHOX2O60902 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
SHOX2O60902 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC15.07■□□□□ 0
SHOX2O60902 CCT3-204ENST00000368259 1815 ntTSL 2 BASIC15.07■□□□□ 0
SHOX2O60902 AL360270.3-201ENST00000609118 1348 ntBASIC15.07■□□□□ 0
SHOX2O60902 ELP4-201ENST00000350638 1907 ntAPPRIS ALT1 TSL 5 BASIC15.07■□□□□ 0
SHOX2O60902 IFT81-201ENST00000242591 3108 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
SHOX2O60902 WDR5-201ENST00000358625 3151 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Retrieved 100 of 98,524 protein–RNA pairs in 40.1 ms