Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 ELP1-201ENST00000374647 5905 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
SLC28A1O00337 AL591623.1-201ENST00000417786 1960 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
SLC28A1O00337 AL589740.1-203ENST00000433637 1984 ntTSL 2 BASIC14.54□□□□□ -0.08
SLC28A1O00337 AL354702.1-201ENST00000442006 1960 ntBASIC14.54□□□□□ -0.08
SLC28A1O00337 NUDT16-202ENST00000521288 6108 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
SLC28A1O00337 TPD52L2-202ENST00000346249 2297 ntAPPRIS ALT1 TSL 1 (best) BASIC14.54□□□□□ -0.08
SLC28A1O00337 TMTC1-207ENST00000552618 3915 ntTSL 5 BASIC14.54□□□□□ -0.08
SLC28A1O00337 CASP2-207ENST00000619992 4006 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
SLC28A1O00337 PAX6-202ENST00000379107 2579 ntAPPRIS P4 TSL 5 BASIC14.54□□□□□ -0.08
SLC28A1O00337 PPARGC1B-203ENST00000394320 4803 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
SLC28A1O00337 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
SLC28A1O00337 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
SLC28A1O00337 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
SLC28A1O00337 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
SLC28A1O00337 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC14.54□□□□□ -0.08
SLC28A1O00337 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC14.54□□□□□ -0.08
SLC28A1O00337 TBC1D8-202ENST00000409318 3803 ntTSL 5 BASIC14.54□□□□□ -0.08
SLC28A1O00337 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC14.54□□□□□ -0.08
SLC28A1O00337 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC14.54□□□□□ -0.08
SLC28A1O00337 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
SLC28A1O00337 CCKBR-204ENST00000531712 463 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
SLC28A1O00337 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
SLC28A1O00337 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC14.54□□□□□ -0.08
SLC28A1O00337 AC023310.3-201ENST00000557027 670 ntBASIC14.54□□□□□ -0.08
SLC28A1O00337 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC14.54□□□□□ -0.08
SLC28A1O00337 AC100756.1-201ENST00000562736 682 ntBASIC14.54□□□□□ -0.08
SLC28A1O00337 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC14.54□□□□□ -0.08
SLC28A1O00337 RRP7BP-205ENST00000566851 833 ntBASIC14.54□□□□□ -0.08
SLC28A1O00337 AC138749.3-201ENST00000567691 622 ntBASIC14.54□□□□□ -0.08
SLC28A1O00337 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC14.54□□□□□ -0.08
SLC28A1O00337 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC14.54□□□□□ -0.08
SLC28A1O00337 AC116165.1-201ENST00000611806 668 ntBASIC14.54□□□□□ -0.08
SLC28A1O00337 AGAP1-213ENST00000619456 1057 ntTSL 5 BASIC14.54□□□□□ -0.08
SLC28A1O00337 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
SLC28A1O00337 AC006262.1-203ENST00000598170 1634 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
SLC28A1O00337 IRAK4-212ENST00000551736 1684 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
SLC28A1O00337 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
SLC28A1O00337 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC14.54□□□□□ -0.08
SLC28A1O00337 SLC7A8-212ENST00000529705 1819 ntTSL 2 BASIC14.54□□□□□ -0.08
SLC28A1O00337 YWHAE-208ENST00000571732 1818 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
SLC28A1O00337 FES-203ENST00000394302 2133 ntTSL 5 BASIC14.54□□□□□ -0.08
SLC28A1O00337 ACE-201ENST00000290863 2479 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
SLC28A1O00337 C5orf66-206ENST00000624272 2479 ntTSL 2 BASIC14.54□□□□□ -0.08
SLC28A1O00337 PYGM-202ENST00000377432 2611 ntTSL 2 BASIC14.54□□□□□ -0.08
SLC28A1O00337 SLC1A7-206ENST00000620347 2873 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
SLC28A1O00337 PRKD2-206ENST00000595515 3012 ntTSL 2 BASIC14.54□□□□□ -0.08
SLC28A1O00337 ATG5-201ENST00000343245 3092 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
SLC28A1O00337 TMPRSS6-204ENST00000406856 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
SLC28A1O00337 FAM219A-204ENST00000379081 3543 ntTSL 5 BASIC14.54□□□□□ -0.08
SLC28A1O00337 CDCA2-201ENST00000330560 3731 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
SLC28A1O00337 GOPC-201ENST00000052569 4590 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
SLC28A1O00337 DHX36-213ENST00000496811 6733 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
SLC28A1O00337 PCNX1-202ENST00000439984 6988 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
SLC28A1O00337 KIF17-201ENST00000247986 3969 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
SLC28A1O00337 ZNF74-209ENST00000611540 3714 ntAPPRIS P2 TSL 2 BASIC14.53□□□□□ -0.08
SLC28A1O00337 TFE3-201ENST00000315869 3415 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
SLC28A1O00337 SOX7-201ENST00000304501 3216 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
SLC28A1O00337 ZNF219-203ENST00000451119 2918 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
SLC28A1O00337 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC14.53□□□□□ -0.08
SLC28A1O00337 ALG1-204ENST00000588623 2671 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
SLC28A1O00337 CLCNKA-201ENST00000331433 2475 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
SLC28A1O00337 AC027601.5-201ENST00000624065 2482 ntBASIC14.53□□□□□ -0.08
SLC28A1O00337 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC14.53□□□□□ -0.08
SLC28A1O00337 CAMLG-201ENST00000297156 2221 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
SLC28A1O00337 LINC00163-201ENST00000434081 2155 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
SLC28A1O00337 BCAR3-210ENST00000539242 2114 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
SLC28A1O00337 PES1-201ENST00000335214 1988 ntAPPRIS ALT1 TSL 1 (best) BASIC14.53□□□□□ -0.08
SLC28A1O00337 PTPN20-206ENST00000395722 1995 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
SLC28A1O00337 KRT32-201ENST00000225899 1750 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
SLC28A1O00337 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC14.53□□□□□ -0.08
SLC28A1O00337 ALDOA-209ENST00000563060 1550 ntAPPRIS P2 TSL 1 (best) BASIC14.53□□□□□ -0.08
SLC28A1O00337 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC14.53□□□□□ -0.08
SLC28A1O00337 AFAP1-204ENST00000420658 7768 ntAPPRIS ALT1 TSL 2 BASIC14.53□□□□□ -0.08
SLC28A1O00337 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
SLC28A1O00337 SMAD2-202ENST00000356825 10445 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
SLC28A1O00337 KHNYN-201ENST00000251343 6725 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
SLC28A1O00337 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
SLC28A1O00337 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC14.53□□□□□ -0.08
SLC28A1O00337 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
SLC28A1O00337 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC14.53□□□□□ -0.08
SLC28A1O00337 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC14.53□□□□□ -0.08
SLC28A1O00337 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC14.53□□□□□ -0.08
SLC28A1O00337 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
SLC28A1O00337 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC14.53□□□□□ -0.08
SLC28A1O00337 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC14.53□□□□□ -0.08
SLC28A1O00337 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC14.53□□□□□ -0.08
SLC28A1O00337 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC14.53□□□□□ -0.08
SLC28A1O00337 RNA5-8SN1-201ENST00000610460 153 ntBASIC14.53□□□□□ -0.08
SLC28A1O00337 RNA5-8SN5-202ENST00000612463 153 ntBASIC14.53□□□□□ -0.08
SLC28A1O00337 RNA5-8SN4-201ENST00000613359 153 ntBASIC14.53□□□□□ -0.08
SLC28A1O00337 AC023511.2-201ENST00000618803 211 ntBASIC14.53□□□□□ -0.08
SLC28A1O00337 RNA5-8SN5-201ENST00000619471 153 ntBASIC14.53□□□□□ -0.08
SLC28A1O00337 TTLL10-AS1-201ENST00000379317 3532 ntTSL 2 BASIC14.53□□□□□ -0.08
SLC28A1O00337 DTX3-202ENST00000548198 3199 ntAPPRIS P3 TSL 2 BASIC14.53□□□□□ -0.08
SLC28A1O00337 KIF26B-202ENST00000407071 7287 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
SLC28A1O00337 SHC1-204ENST00000368450 3059 ntAPPRIS ALT1 TSL 1 (best) BASIC14.53□□□□□ -0.08
SLC28A1O00337 SHC1-205ENST00000368453 3062 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
SLC28A1O00337 ABCC6-208ENST00000622290 4941 ntTSL 5 BASIC14.53□□□□□ -0.08
SLC28A1O00337 LRRC41-201ENST00000343304 2947 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
SLC28A1O00337 POLR2E-213ENST00000615234 2831 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 34.1 ms