Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 PPP4R4-201ENST00000304338 3868 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
HIF3AQ9Y2N7 RPS23-201ENST00000296674 3437 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
HIF3AQ9Y2N7 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC13.65□□□□□ -0.22
HIF3AQ9Y2N7 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
HIF3AQ9Y2N7 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC13.65□□□□□ -0.22
HIF3AQ9Y2N7 AMT-232ENST00000636199 1546 ntTSL 5 BASIC13.65□□□□□ -0.22
HIF3AQ9Y2N7 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
HIF3AQ9Y2N7 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
HIF3AQ9Y2N7 TRIM13-202ENST00000378182 7249 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.22
HIF3AQ9Y2N7 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
HIF3AQ9Y2N7 FLNA-207ENST00000422373 8486 ntAPPRIS P3 TSL 5 BASIC13.65□□□□□ -0.22
HIF3AQ9Y2N7 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC13.65□□□□□ -0.22
HIF3AQ9Y2N7 CTBP1-AS2-205ENST00000578730 2757 ntTSL 2 BASIC13.65□□□□□ -0.22
HIF3AQ9Y2N7 ZNF607-201ENST00000355202 4364 ntAPPRIS P3 TSL 2 BASIC13.65□□□□□ -0.22
HIF3AQ9Y2N7 SETD1B-203ENST00000604567 5969 ntAPPRIS ALT2 TSL 5 BASIC13.65□□□□□ -0.22
HIF3AQ9Y2N7 DEF8-210ENST00000563594 4450 ntAPPRIS P4 TSL 1 (best) BASIC13.65□□□□□ -0.22
HIF3AQ9Y2N7 GOPC-201ENST00000052569 4590 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
HIF3AQ9Y2N7 KIAA1191-201ENST00000298569 2991 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
HIF3AQ9Y2N7 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
HIF3AQ9Y2N7 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC13.65□□□□□ -0.22
HIF3AQ9Y2N7 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
HIF3AQ9Y2N7 TEX30-203ENST00000376022 828 ntTSL 2 BASIC13.65□□□□□ -0.22
HIF3AQ9Y2N7 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.22
HIF3AQ9Y2N7 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
HIF3AQ9Y2N7 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC13.65□□□□□ -0.22
HIF3AQ9Y2N7 TMPRSS11CP-201ENST00000453277 683 ntBASIC13.65□□□□□ -0.22
HIF3AQ9Y2N7 AC055876.2-201ENST00000531834 546 ntBASIC13.65□□□□□ -0.22
HIF3AQ9Y2N7 AC007431.3-201ENST00000623221 587 ntBASIC13.65□□□□□ -0.22
HIF3AQ9Y2N7 BX539320.1-201ENST00000623759 877 ntBASIC13.65□□□□□ -0.22
HIF3AQ9Y2N7 SLC52A3-202ENST00000381944 3060 ntTSL 2 BASIC13.65□□□□□ -0.22
HIF3AQ9Y2N7 SAMD4A-213ENST00000631086 6677 ntTSL 5 BASIC13.65□□□□□ -0.22
HIF3AQ9Y2N7 CYB561-203ENST00000392976 3151 ntAPPRIS P1 TSL 3 BASIC13.65□□□□□ -0.22
HIF3AQ9Y2N7 FAM210A-202ENST00000402563 4240 ntAPPRIS P1 TSL 3 BASIC13.65□□□□□ -0.22
HIF3AQ9Y2N7 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC13.65□□□□□ -0.22
HIF3AQ9Y2N7 LGALS8-203ENST00000341872 2437 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
HIF3AQ9Y2N7 SNPH-203ENST00000614659 5354 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
HIF3AQ9Y2N7 TMEM230-201ENST00000202834 1472 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
HIF3AQ9Y2N7 USP47-207ENST00000527733 4525 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.22
HIF3AQ9Y2N7 YME1L1-202ENST00000375972 2517 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
HIF3AQ9Y2N7 RALGDS-201ENST00000372047 3598 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
HIF3AQ9Y2N7 CRB2-201ENST00000359999 3659 ntTSL 2 BASIC13.65□□□□□ -0.22
HIF3AQ9Y2N7 GLIPR1L2-204ENST00000550916 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
HIF3AQ9Y2N7 INTS4P1-203ENST00000641008 3683 ntBASIC13.65□□□□□ -0.22
HIF3AQ9Y2N7 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC13.65□□□□□ -0.22
HIF3AQ9Y2N7 CBX3-202ENST00000396386 1857 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
HIF3AQ9Y2N7 TFAP2A-213ENST00000482890 2071 ntAPPRIS P3 TSL 5 BASIC13.65□□□□□ -0.22
HIF3AQ9Y2N7 MCHR2-201ENST00000281806 2368 ntAPPRIS P1 TSL 2 BASIC13.65□□□□□ -0.22
HIF3AQ9Y2N7 EXOC6B-209ENST00000634650 2583 ntTSL 5 BASIC13.65□□□□□ -0.22
HIF3AQ9Y2N7 SUSD5-201ENST00000309558 5008 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
HIF3AQ9Y2N7 ECSIT-201ENST00000252440 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
HIF3AQ9Y2N7 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
HIF3AQ9Y2N7 SYNRG-217ENST00000612223 8229 ntAPPRIS P4 TSL 1 (best) BASIC13.64□□□□□ -0.23
HIF3AQ9Y2N7 C1orf43-206ENST00000368521 1708 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
HIF3AQ9Y2N7 LMX1B-202ENST00000373474 5797 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
HIF3AQ9Y2N7 BX640514.1-201ENST00000583223 1918 ntBASIC13.64□□□□□ -0.23
HIF3AQ9Y2N7 GGT1-201ENST00000248923 2326 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
HIF3AQ9Y2N7 ARPP19-202ENST00000561650 3245 ntTSL 2 BASIC13.64□□□□□ -0.23
HIF3AQ9Y2N7 GTF2IRD1-201ENST00000265755 3430 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
HIF3AQ9Y2N7 TERT-201ENST00000310581 4018 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
HIF3AQ9Y2N7 PAPPA-201ENST00000328252 10959 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
HIF3AQ9Y2N7 ZNF618-207ENST00000615615 9289 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
HIF3AQ9Y2N7 RP1L1-202ENST00000382483 7973 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
HIF3AQ9Y2N7 CERS6-202ENST00000392687 6851 ntAPPRIS ALT1 TSL 1 (best) BASIC13.64□□□□□ -0.23
HIF3AQ9Y2N7 AFDN-203ENST00000366806 5962 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
HIF3AQ9Y2N7 IL17RD-201ENST00000296318 8720 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
HIF3AQ9Y2N7 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC13.64□□□□□ -0.23
HIF3AQ9Y2N7 LINC00924-202ENST00000556053 2682 ntTSL 2 BASIC13.64□□□□□ -0.23
HIF3AQ9Y2N7 DNAJA1-201ENST00000330899 2381 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
HIF3AQ9Y2N7 MCM3AP-AS1-203ENST00000421927 2280 ntTSL 2 BASIC13.64□□□□□ -0.23
HIF3AQ9Y2N7 LINC00839-202ENST00000429940 2253 ntTSL 2 BASIC13.64□□□□□ -0.23
HIF3AQ9Y2N7 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC13.64□□□□□ -0.23
HIF3AQ9Y2N7 DRC3-216ENST00000584166 1953 ntTSL 5 BASIC13.64□□□□□ -0.23
HIF3AQ9Y2N7 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC13.64□□□□□ -0.23
HIF3AQ9Y2N7 ALG3-207ENST00000455059 1697 ntTSL 5 BASIC13.64□□□□□ -0.23
HIF3AQ9Y2N7 FAM103A1-201ENST00000304191 1568 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
HIF3AQ9Y2N7 MEIOC-201ENST00000409122 4604 ntAPPRIS P2 TSL 5 BASIC13.64□□□□□ -0.23
HIF3AQ9Y2N7 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
HIF3AQ9Y2N7 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
HIF3AQ9Y2N7 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC13.64□□□□□ -0.23
HIF3AQ9Y2N7 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC13.64□□□□□ -0.23
HIF3AQ9Y2N7 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC13.64□□□□□ -0.23
HIF3AQ9Y2N7 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
HIF3AQ9Y2N7 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
HIF3AQ9Y2N7 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC13.64□□□□□ -0.23
HIF3AQ9Y2N7 AC134915.1-201ENST00000426461 574 ntBASIC13.64□□□□□ -0.23
HIF3AQ9Y2N7 CD81-207ENST00000481687 890 ntTSL 2 BASIC13.64□□□□□ -0.23
HIF3AQ9Y2N7 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC13.64□□□□□ -0.23
HIF3AQ9Y2N7 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC13.64□□□□□ -0.23
HIF3AQ9Y2N7 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC13.64□□□□□ -0.23
HIF3AQ9Y2N7 AL356805.1-201ENST00000556383 341 ntTSL 3 BASIC13.64□□□□□ -0.23
HIF3AQ9Y2N7 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC13.64□□□□□ -0.23
HIF3AQ9Y2N7 AC120045.2-201ENST00000567334 178 ntBASIC13.64□□□□□ -0.23
HIF3AQ9Y2N7 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
HIF3AQ9Y2N7 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC13.64□□□□□ -0.23
HIF3AQ9Y2N7 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC13.64□□□□□ -0.23
HIF3AQ9Y2N7 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
HIF3AQ9Y2N7 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC13.64□□□□□ -0.23
HIF3AQ9Y2N7 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC13.64□□□□□ -0.23
HIF3AQ9Y2N7 TARDBP-201ENST00000240185 5367 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
HIF3AQ9Y2N7 AL928970.1-201ENST00000422679 2923 ntTSL 5 BASIC13.64□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 57.5 ms