Protein–RNA interactions for Protein: Q9Y296

TRAPPC4, Trafficking protein particle complex subunit 4, humanhuman

Predictions only

Length 219 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAPPC4Q9Y296 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
TRAPPC4Q9Y296 TIFA-201ENST00000361717 4157 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
TRAPPC4Q9Y296 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
TRAPPC4Q9Y296 ILF2-201ENST00000361891 1659 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
TRAPPC4Q9Y296 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
TRAPPC4Q9Y296 DYNLL2-201ENST00000579991 6805 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
TRAPPC4Q9Y296 LAT2-205ENST00000460943 2527 ntAPPRIS P2 TSL 1 (best) BASIC13.89□□□□□ -0.19
TRAPPC4Q9Y296 IL20RA-201ENST00000316649 3485 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
TRAPPC4Q9Y296 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC13.89□□□□□ -0.19
TRAPPC4Q9Y296 HNRNPH3-201ENST00000265866 2339 ntAPPRIS P4 TSL 1 (best) BASIC13.89□□□□□ -0.19
TRAPPC4Q9Y296 LRP10-201ENST00000359591 6886 ntAPPRIS P2 TSL 1 (best) BASIC13.89□□□□□ -0.19
TRAPPC4Q9Y296 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
TRAPPC4Q9Y296 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
TRAPPC4Q9Y296 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
TRAPPC4Q9Y296 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
TRAPPC4Q9Y296 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC13.89□□□□□ -0.19
TRAPPC4Q9Y296 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC13.89□□□□□ -0.19
TRAPPC4Q9Y296 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC13.89□□□□□ -0.19
TRAPPC4Q9Y296 AL442647.2-201ENST00000429864 857 ntBASIC13.89□□□□□ -0.19
TRAPPC4Q9Y296 CDYL-205ENST00000449732 2139 ntTSL 2 BASIC13.89□□□□□ -0.19
TRAPPC4Q9Y296 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC13.89□□□□□ -0.19
TRAPPC4Q9Y296 API5-211ENST00000534695 560 ntTSL 5 BASIC13.89□□□□□ -0.19
TRAPPC4Q9Y296 AC123567.1-201ENST00000548294 1261 ntBASIC13.89□□□□□ -0.19
TRAPPC4Q9Y296 CDK4-206ENST00000549606 558 ntTSL 2 BASIC13.89□□□□□ -0.19
TRAPPC4Q9Y296 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC13.89□□□□□ -0.19
TRAPPC4Q9Y296 ZNF83-215ENST00000600714 810 ntTSL 3 BASIC13.89□□□□□ -0.19
TRAPPC4Q9Y296 AL049840.4-201ENST00000602422 811 ntBASIC13.89□□□□□ -0.19
TRAPPC4Q9Y296 AL662799.1-202ENST00000614205 422 ntBASIC13.89□□□□□ -0.19
TRAPPC4Q9Y296 BPTF-202ENST00000321892 11292 ntAPPRIS ALT2 TSL 5 BASIC13.89□□□□□ -0.19
TRAPPC4Q9Y296 ATP6V1H-202ENST00000359530 2007 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
TRAPPC4Q9Y296 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC13.89□□□□□ -0.19
TRAPPC4Q9Y296 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
TRAPPC4Q9Y296 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC13.89□□□□□ -0.19
TRAPPC4Q9Y296 NXPH1-201ENST00000405863 2921 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
TRAPPC4Q9Y296 CICP8-201ENST00000455800 2813 ntBASIC13.89□□□□□ -0.19
TRAPPC4Q9Y296 GDPD2-204ENST00000536730 2171 ntTSL 2 BASIC13.89□□□□□ -0.19
TRAPPC4Q9Y296 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC13.89□□□□□ -0.19
TRAPPC4Q9Y296 SPRY2-201ENST00000377102 2708 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
TRAPPC4Q9Y296 FARP1-214ENST00000595437 4926 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
TRAPPC4Q9Y296 DTX3-202ENST00000548198 3199 ntAPPRIS P3 TSL 2 BASIC13.89□□□□□ -0.19
TRAPPC4Q9Y296 GAL3ST4-202ENST00000411994 1404 ntTSL 2 BASIC13.89□□□□□ -0.19
TRAPPC4Q9Y296 ZNF586-202ENST00000396150 1977 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
TRAPPC4Q9Y296 USP19-203ENST00000398892 4622 ntAPPRIS ALT2 TSL 5 BASIC13.89□□□□□ -0.19
TRAPPC4Q9Y296 KCNQ4-201ENST00000347132 4099 ntAPPRIS P2 TSL 1 (best) BASIC13.89□□□□□ -0.19
TRAPPC4Q9Y296 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
TRAPPC4Q9Y296 AK4-202ENST00000395334 6998 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
TRAPPC4Q9Y296 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC13.88□□□□□ -0.19
TRAPPC4Q9Y296 HNRNPH1-204ENST00000442819 2248 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
TRAPPC4Q9Y296 CYP1A1-207ENST00000567032 2107 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
TRAPPC4Q9Y296 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC13.88□□□□□ -0.19
TRAPPC4Q9Y296 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC13.88□□□□□ -0.19
TRAPPC4Q9Y296 ANXA6-215ENST00000523714 2451 ntTSL 2 BASIC13.88□□□□□ -0.19
TRAPPC4Q9Y296 JRK-209ENST00000612905 9124 ntAPPRIS P4 TSL 2 BASIC13.88□□□□□ -0.19
TRAPPC4Q9Y296 CARHSP1-220ENST00000619881 2849 ntAPPRIS P1 TSL 3 BASIC13.88□□□□□ -0.19
TRAPPC4Q9Y296 LHCGR-202ENST00000401907 1477 ntTSL 5 BASIC13.88□□□□□ -0.19
TRAPPC4Q9Y296 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC13.88□□□□□ -0.19
TRAPPC4Q9Y296 HVCN1-202ENST00000356742 2189 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
TRAPPC4Q9Y296 MBD1-209ENST00000398495 2178 ntTSL 5 BASIC13.88□□□□□ -0.19
TRAPPC4Q9Y296 AGPAT3-218ENST00000546158 2199 ntAPPRIS P1 TSL 5 BASIC13.88□□□□□ -0.19
TRAPPC4Q9Y296 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC13.88□□□□□ -0.19
TRAPPC4Q9Y296 RAF1-201ENST00000251849 3300 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
TRAPPC4Q9Y296 KANK2-201ENST00000586659 5162 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
TRAPPC4Q9Y296 SLC35A3-209ENST00000638338 2890 ntTSL 5 BASIC13.88□□□□□ -0.19
TRAPPC4Q9Y296 NDUFA2-201ENST00000252102 804 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
TRAPPC4Q9Y296 METTL26-204ENST00000397665 558 ntTSL 2 BASIC13.88□□□□□ -0.19
TRAPPC4Q9Y296 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC13.88□□□□□ -0.19
TRAPPC4Q9Y296 AC004066.1-201ENST00000502488 802 ntBASIC13.88□□□□□ -0.19
TRAPPC4Q9Y296 AC025442.1-201ENST00000521596 481 ntTSL 2 BASIC13.88□□□□□ -0.19
TRAPPC4Q9Y296 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC13.88□□□□□ -0.19
TRAPPC4Q9Y296 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC13.88□□□□□ -0.19
TRAPPC4Q9Y296 AC092552.1-201ENST00000547243 906 ntBASIC13.88□□□□□ -0.19
TRAPPC4Q9Y296 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC13.88□□□□□ -0.19
TRAPPC4Q9Y296 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC13.88□□□□□ -0.19
TRAPPC4Q9Y296 INO80C-210ENST00000590757 595 ntTSL 2 BASIC13.88□□□□□ -0.19
TRAPPC4Q9Y296 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC13.88□□□□□ -0.19
TRAPPC4Q9Y296 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC13.88□□□□□ -0.19
TRAPPC4Q9Y296 WNT9B-202ENST00000393461 2654 ntTSL 2 BASIC13.88□□□□□ -0.19
TRAPPC4Q9Y296 PML-208ENST00000436891 3010 ntAPPRIS ALT2 TSL 5 BASIC13.88□□□□□ -0.19
TRAPPC4Q9Y296 PPFIA3-203ENST00000602351 4341 ntTSL 5 BASIC13.88□□□□□ -0.19
TRAPPC4Q9Y296 OSBPL5-203ENST00000389989 3619 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
TRAPPC4Q9Y296 MBD1-201ENST00000269468 3259 ntAPPRIS P3 TSL 5 BASIC13.88□□□□□ -0.19
TRAPPC4Q9Y296 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
TRAPPC4Q9Y296 PHF19-203ENST00000419155 3525 ntTSL 2 BASIC13.88□□□□□ -0.19
TRAPPC4Q9Y296 UBE3A-227ENST00000638011 8742 ntAPPRIS ALT1 TSL 5 BASIC13.88□□□□□ -0.19
TRAPPC4Q9Y296 TK2-221ENST00000620035 5060 ntTSL 2 BASIC13.88□□□□□ -0.19
TRAPPC4Q9Y296 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
TRAPPC4Q9Y296 MAPK13-203ENST00000373766 6196 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
TRAPPC4Q9Y296 DCAF17-202ENST00000375255 5828 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
TRAPPC4Q9Y296 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
TRAPPC4Q9Y296 SERPINA4-203ENST00000557004 2012 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
TRAPPC4Q9Y296 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC13.88□□□□□ -0.19
TRAPPC4Q9Y296 SLC23A1-201ENST00000348729 2299 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
TRAPPC4Q9Y296 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC13.88□□□□□ -0.19
TRAPPC4Q9Y296 HTR7-203ENST00000371719 3033 ntAPPRIS ALT1 TSL 1 (best) BASIC13.88□□□□□ -0.19
TRAPPC4Q9Y296 NUP54-217ENST00000514987 1563 ntTSL 2 BASIC13.88□□□□□ -0.19
TRAPPC4Q9Y296 NUCB1-201ENST00000405315 2668 ntAPPRIS P2 TSL 1 (best) BASIC13.87□□□□□ -0.19
TRAPPC4Q9Y296 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC13.87□□□□□ -0.19
TRAPPC4Q9Y296 ZNF84-202ENST00000392319 7020 ntAPPRIS P2 TSL 1 (best) BASIC13.87□□□□□ -0.19
TRAPPC4Q9Y296 FNDC1-201ENST00000297267 6552 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
TRAPPC4Q9Y296 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 31.6 ms