Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 TSPAN12-201ENST00000222747 2798 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CHMP1AQ9HD42 FUT1-201ENST00000310160 4246 ntAPPRIS P1 TSL 5 BASIC13.1□□□□□ -0.31
CHMP1AQ9HD42 LYN-204ENST00000520220 5808 ntAPPRIS ALT1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CHMP1AQ9HD42 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC13.1□□□□□ -0.31
CHMP1AQ9HD42 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
CHMP1AQ9HD42 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC13.1□□□□□ -0.31
CHMP1AQ9HD42 PORCN-201ENST00000326194 1755 ntAPPRIS P4 TSL 1 (best) BASIC13.1□□□□□ -0.31
CHMP1AQ9HD42 UNQ6494-202ENST00000617436 2163 ntTSL 2 BASIC13.1□□□□□ -0.31
CHMP1AQ9HD42 IMPDH1P4-201ENST00000445028 1534 ntBASIC13.1□□□□□ -0.31
CHMP1AQ9HD42 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC13.1□□□□□ -0.31
CHMP1AQ9HD42 HSPA7-201ENST00000445535 1927 ntBASIC13.1□□□□□ -0.31
CHMP1AQ9HD42 LDLR-202ENST00000455727 2333 ntTSL 2 BASIC13.1□□□□□ -0.31
CHMP1AQ9HD42 SLC19A2-201ENST00000236137 3671 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CHMP1AQ9HD42 RGS9-202ENST00000443584 2078 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
CHMP1AQ9HD42 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC13.1□□□□□ -0.31
CHMP1AQ9HD42 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC13.1□□□□□ -0.31
CHMP1AQ9HD42 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC13.1□□□□□ -0.31
CHMP1AQ9HD42 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC13.1□□□□□ -0.31
CHMP1AQ9HD42 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
CHMP1AQ9HD42 FO393414.2-201ENST00000405153 598 ntBASIC13.1□□□□□ -0.31
CHMP1AQ9HD42 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC13.1□□□□□ -0.31
CHMP1AQ9HD42 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC13.1□□□□□ -0.31
CHMP1AQ9HD42 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC13.1□□□□□ -0.31
CHMP1AQ9HD42 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC13.1□□□□□ -0.31
CHMP1AQ9HD42 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC13.1□□□□□ -0.31
CHMP1AQ9HD42 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC13.1□□□□□ -0.31
CHMP1AQ9HD42 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC13.1□□□□□ -0.31
CHMP1AQ9HD42 AL356805.1-201ENST00000556383 341 ntTSL 3 BASIC13.1□□□□□ -0.31
CHMP1AQ9HD42 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC13.1□□□□□ -0.31
CHMP1AQ9HD42 AC084121.4-201ENST00000641598 221 ntBASIC13.1□□□□□ -0.31
CHMP1AQ9HD42 AF228730.8-201ENST00000642140 221 ntBASIC13.1□□□□□ -0.31
CHMP1AQ9HD42 ABCB7-202ENST00000339447 2234 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
CHMP1AQ9HD42 HTR3A-206ENST00000506841 2221 ntTSL 2 BASIC13.1□□□□□ -0.31
CHMP1AQ9HD42 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC13.1□□□□□ -0.31
CHMP1AQ9HD42 MBP-205ENST00000397860 4844 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
CHMP1AQ9HD42 GAB2-202ENST00000361507 6092 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CHMP1AQ9HD42 PRKAG2-215ENST00000492843 2699 ntTSL 5 BASIC13.1□□□□□ -0.31
CHMP1AQ9HD42 SIPA1-203ENST00000527525 3235 ntTSL 2 BASIC13.1□□□□□ -0.31
CHMP1AQ9HD42 RNPS1-216ENST00000565678 2298 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CHMP1AQ9HD42 CCDC32-201ENST00000358005 1704 ntAPPRIS P1 TSL 2 BASIC13.1□□□□□ -0.31
CHMP1AQ9HD42 AL928921.2-201ENST00000641325 2442 ntBASIC13.1□□□□□ -0.31
CHMP1AQ9HD42 TNFRSF1B-201ENST00000376259 3683 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CHMP1AQ9HD42 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
CHMP1AQ9HD42 AP1B1-208ENST00000432560 4146 ntAPPRIS P1 TSL 5 BASIC13.1□□□□□ -0.31
CHMP1AQ9HD42 PEAR1-202ENST00000338302 4970 ntAPPRIS P1 TSL 5 BASIC13.1□□□□□ -0.31
CHMP1AQ9HD42 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC13.1□□□□□ -0.31
CHMP1AQ9HD42 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC13.1□□□□□ -0.31
CHMP1AQ9HD42 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC13.1□□□□□ -0.31
CHMP1AQ9HD42 SAFB-201ENST00000292123 3042 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
CHMP1AQ9HD42 GPR37-201ENST00000303921 3021 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CHMP1AQ9HD42 ZNF717-204ENST00000478296 3875 ntAPPRIS P1 TSL 5 BASIC13.1□□□□□ -0.31
CHMP1AQ9HD42 AFAP1L1-205ENST00000515000 2319 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
CHMP1AQ9HD42 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
CHMP1AQ9HD42 WAPL-206ENST00000618527 6152 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
CHMP1AQ9HD42 MED12L-203ENST00000422248 2757 ntAPPRIS ALT2 TSL 2 BASIC13.09□□□□□ -0.31
CHMP1AQ9HD42 SLC44A1-202ENST00000374723 9640 ntAPPRIS ALT1 TSL 1 (best) BASIC13.09□□□□□ -0.31
CHMP1AQ9HD42 ELL2P1-201ENST00000413990 1906 ntBASIC13.09□□□□□ -0.31
CHMP1AQ9HD42 SV2A-201ENST00000369145 2903 ntTSL 2 BASIC13.09□□□□□ -0.31
CHMP1AQ9HD42 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC13.09□□□□□ -0.31
CHMP1AQ9HD42 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
CHMP1AQ9HD42 SPG11-202ENST00000427534 6935 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
CHMP1AQ9HD42 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC13.09□□□□□ -0.31
CHMP1AQ9HD42 GALNT3-201ENST00000392701 3868 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
CHMP1AQ9HD42 STX18-AS1-207ENST00000610009 2406 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
CHMP1AQ9HD42 DFNA5-201ENST00000342947 2590 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
CHMP1AQ9HD42 DPYSL4-201ENST00000338492 2729 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
CHMP1AQ9HD42 WDR5-201ENST00000358625 3151 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
CHMP1AQ9HD42 MCC-202ENST00000408903 3476 ntAPPRIS P1 TSL 2 BASIC13.09□□□□□ -0.31
CHMP1AQ9HD42 CRACR2A-201ENST00000252322 2186 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
CHMP1AQ9HD42 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
CHMP1AQ9HD42 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC13.09□□□□□ -0.31
CHMP1AQ9HD42 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
CHMP1AQ9HD42 PCDHA7-201ENST00000356878 2922 ntAPPRIS ALT2 BASIC13.09□□□□□ -0.31
CHMP1AQ9HD42 LRRFIP1-204ENST00000392000 3365 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
CHMP1AQ9HD42 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC13.09□□□□□ -0.31
CHMP1AQ9HD42 AC073869.1-201ENST00000415574 2762 ntBASIC13.09□□□□□ -0.31
CHMP1AQ9HD42 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC13.09□□□□□ -0.31
CHMP1AQ9HD42 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC13.09□□□□□ -0.31
CHMP1AQ9HD42 RBPMS2P1-201ENST00000437762 623 ntBASIC13.09□□□□□ -0.31
CHMP1AQ9HD42 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC13.09□□□□□ -0.31
CHMP1AQ9HD42 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC13.09□□□□□ -0.31
CHMP1AQ9HD42 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC13.09□□□□□ -0.31
CHMP1AQ9HD42 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC13.09□□□□□ -0.31
CHMP1AQ9HD42 HDAC2-206ENST00000519108 2000 ntTSL 2 BASIC13.09□□□□□ -0.31
CHMP1AQ9HD42 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC13.09□□□□□ -0.31
CHMP1AQ9HD42 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC13.09□□□□□ -0.31
CHMP1AQ9HD42 AC022145.2-201ENST00000598203 171 ntBASIC13.09□□□□□ -0.31
CHMP1AQ9HD42 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC13.09□□□□□ -0.31
CHMP1AQ9HD42 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC13.09□□□□□ -0.31
CHMP1AQ9HD42 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC13.09□□□□□ -0.31
CHMP1AQ9HD42 PDZD7-206ENST00000619208 4135 ntAPPRIS P1 TSL 5 BASIC13.09□□□□□ -0.31
CHMP1AQ9HD42 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
CHMP1AQ9HD42 SETD6-203ENST00000394266 3423 ntTSL 5 BASIC13.09□□□□□ -0.31
CHMP1AQ9HD42 CYP1A1-210ENST00000617691 2521 ntTSL 5 BASIC13.09□□□□□ -0.31
CHMP1AQ9HD42 MYO1C-218ENST00000575158 4804 ntAPPRIS P3 TSL 5 BASIC13.09□□□□□ -0.31
CHMP1AQ9HD42 ATN1-201ENST00000356654 4351 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
CHMP1AQ9HD42 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
CHMP1AQ9HD42 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC13.09□□□□□ -0.31
CHMP1AQ9HD42 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC13.09□□□□□ -0.31
CHMP1AQ9HD42 CYB561-201ENST00000360793 3001 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 62.3 ms