Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
SHANK3Q9BYB0 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC18.86■□□□□ 0.61
SHANK3Q9BYB0 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC18.86■□□□□ 0.61
SHANK3Q9BYB0 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SHANK3Q9BYB0 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
SHANK3Q9BYB0 FAM3B-201ENST00000357985 1088 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
SHANK3Q9BYB0 CNRIP1-202ENST00000409559 644 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
SHANK3Q9BYB0 CXorf40A-205ENST00000423540 1208 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
SHANK3Q9BYB0 PRKAR2A-AS1-203ENST00000431705 592 ntTSL 4 BASIC18.86■□□□□ 0.61
SHANK3Q9BYB0 RPL18AP8-201ENST00000486071 528 ntBASIC18.86■□□□□ 0.61
SHANK3Q9BYB0 C8orf31-207ENST00000524181 1199 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
SHANK3Q9BYB0 HKR1-225ENST00000592168 566 ntTSL 4 BASIC18.86■□□□□ 0.61
SHANK3Q9BYB0 AC010976.2-201ENST00000609697 852 ntBASIC18.86■□□□□ 0.61
SHANK3Q9BYB0 AL118522.1-201ENST00000611368 560 ntBASIC18.86■□□□□ 0.61
SHANK3Q9BYB0 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
SHANK3Q9BYB0 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
SHANK3Q9BYB0 ATF4-202ENST00000396680 1419 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SHANK3Q9BYB0 CAB39L-204ENST00000409130 1411 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
SHANK3Q9BYB0 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
SHANK3Q9BYB0 ATG5-201ENST00000343245 3092 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SHANK3Q9BYB0 LINC02021-201ENST00000504808 1608 ntTSL 3 BASIC18.86■□□□□ 0.61
SHANK3Q9BYB0 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
SHANK3Q9BYB0 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC18.86■□□□□ 0.61
SHANK3Q9BYB0 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC18.86■□□□□ 0.61
SHANK3Q9BYB0 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SHANK3Q9BYB0 NEK2-201ENST00000366998 1865 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
SHANK3Q9BYB0 LINC01107-201ENST00000446979 1975 ntTSL 2 BASIC18.86■□□□□ 0.61
SHANK3Q9BYB0 OR3A2-205ENST00000641164 2033 ntAPPRIS P1 BASIC18.86■□□□□ 0.61
SHANK3Q9BYB0 GSTCD-206ENST00000507281 2091 ntTSL 5 BASIC18.86■□□□□ 0.61
SHANK3Q9BYB0 LCK-206ENST00000373564 2137 ntTSL 5 BASIC18.86■□□□□ 0.61
SHANK3Q9BYB0 ADAMTSL1-207ENST00000380566 2321 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
SHANK3Q9BYB0 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SHANK3Q9BYB0 AL935212.1-201ENST00000377548 906 ntTSL 5 BASIC18.86■□□□□ 0.61
SHANK3Q9BYB0 LINC01278-201ENST00000433061 529 ntTSL 3 BASIC18.86■□□□□ 0.61
SHANK3Q9BYB0 AC011247.2-201ENST00000457097 233 ntTSL 4 BASIC18.86■□□□□ 0.61
SHANK3Q9BYB0 INCA1-203ENST00000575780 1221 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
SHANK3Q9BYB0 TRMT112P3-201ENST00000580149 358 ntBASIC18.86■□□□□ 0.61
SHANK3Q9BYB0 SNHG15-205ENST00000580458 710 ntTSL 2 BASIC18.86■□□□□ 0.61
SHANK3Q9BYB0 LINC01278-206ENST00000610088 554 ntTSL 4 BASIC18.86■□□□□ 0.61
SHANK3Q9BYB0 AC011471.3-201ENST00000623576 402 ntBASIC18.86■□□□□ 0.61
SHANK3Q9BYB0 COQ3-201ENST00000254759 1335 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SHANK3Q9BYB0 TMEM230-201ENST00000202834 1472 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SHANK3Q9BYB0 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC18.85■□□□□ 0.61
SHANK3Q9BYB0 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC18.85■□□□□ 0.61
SHANK3Q9BYB0 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
SHANK3Q9BYB0 MAGED4B-207ENST00000485287 2618 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
SHANK3Q9BYB0 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
SHANK3Q9BYB0 MBD3L3-201ENST00000333843 775 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SHANK3Q9BYB0 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SHANK3Q9BYB0 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SHANK3Q9BYB0 MBD3L4-201ENST00000381394 775 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SHANK3Q9BYB0 AL355376.1-201ENST00000456082 517 ntTSL 3 BASIC18.85■□□□□ 0.61
SHANK3Q9BYB0 AC233724.6-201ENST00000503184 1088 ntAPPRIS P1 BASIC18.85■□□□□ 0.61
SHANK3Q9BYB0 AC084752.1-201ENST00000509766 622 ntBASIC18.85■□□□□ 0.61
SHANK3Q9BYB0 AC010285.2-201ENST00000510240 569 ntTSL 4 BASIC18.85■□□□□ 0.61
SHANK3Q9BYB0 HERC2P11-201ENST00000562845 725 ntBASIC18.85■□□□□ 0.61
SHANK3Q9BYB0 AC100756.2-201ENST00000569537 736 ntBASIC18.85■□□□□ 0.61
SHANK3Q9BYB0 TMEM98-205ENST00000578289 806 ntTSL 3 BASIC18.85■□□□□ 0.61
SHANK3Q9BYB0 RN7SL357P-201ENST00000581065 298 ntBASIC18.85■□□□□ 0.61
SHANK3Q9BYB0 PGPEP1-203ENST00000595066 762 ntTSL 2 BASIC18.85■□□□□ 0.61
SHANK3Q9BYB0 PRAMEF8-202ENST00000614831 1592 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
SHANK3Q9BYB0 PRAMEF7-202ENST00000616979 1592 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
SHANK3Q9BYB0 PSMD5-208ENST00000625444 219 ntTSL 5 BASIC18.85■□□□□ 0.61
SHANK3Q9BYB0 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
SHANK3Q9BYB0 ABAT-203ENST00000425191 1923 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
SHANK3Q9BYB0 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
SHANK3Q9BYB0 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC18.84■□□□□ 0.61
SHANK3Q9BYB0 ZCCHC17-201ENST00000344147 1605 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SHANK3Q9BYB0 FAM103A1-201ENST00000304191 1568 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SHANK3Q9BYB0 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
SHANK3Q9BYB0 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
SHANK3Q9BYB0 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SHANK3Q9BYB0 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
SHANK3Q9BYB0 Metazoa_SRP.4-201ENST00000366232 298 ntBASIC18.84■□□□□ 0.61
SHANK3Q9BYB0 AC004889.1-205ENST00000493248 531 ntTSL 4 BASIC18.84■□□□□ 0.61
SHANK3Q9BYB0 OR2A1-AS1-210ENST00000496968 531 ntBASIC18.84■□□□□ 0.61
SHANK3Q9BYB0 AC023421.2-201ENST00000589510 313 ntTSL 5 BASIC18.84■□□□□ 0.61
SHANK3Q9BYB0 RPL13A-213ENST00000621674 1098 ntTSL 5 BASIC18.84■□□□□ 0.61
SHANK3Q9BYB0 SNRPA1-216ENST00000626000 539 ntTSL 5 BASIC18.84■□□□□ 0.61
SHANK3Q9BYB0 AC011451.3-201ENST00000634951 582 ntTSL 3 BASIC18.84■□□□□ 0.61
SHANK3Q9BYB0 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SHANK3Q9BYB0 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SHANK3Q9BYB0 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC18.84■□□□□ 0.61
SHANK3Q9BYB0 SLC35B2-206ENST00000615337 2014 ntTSL 4 BASIC18.84■□□□□ 0.61
SHANK3Q9BYB0 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
SHANK3Q9BYB0 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
SHANK3Q9BYB0 LACTB2-201ENST00000276590 1508 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SHANK3Q9BYB0 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC18.84■□□□□ 0.61
SHANK3Q9BYB0 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC18.83■□□□□ 0.61
SHANK3Q9BYB0 MBD1-211ENST00000585595 2179 ntAPPRIS ALT2 TSL 2 BASIC18.83■□□□□ 0.61
SHANK3Q9BYB0 LIPE-AS1-204ENST00000594624 1448 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
SHANK3Q9BYB0 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
SHANK3Q9BYB0 BCAS2-201ENST00000369541 1299 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
SHANK3Q9BYB0 BCAS2P2-201ENST00000425064 674 ntBASIC18.83■□□□□ 0.61
SHANK3Q9BYB0 AC098934.1-203ENST00000442868 1262 ntBASIC18.83■□□□□ 0.61
SHANK3Q9BYB0 AL355803.1-201ENST00000455524 188 ntTSL 2 BASIC18.83■□□□□ 0.61
SHANK3Q9BYB0 AC107463.1-201ENST00000508605 667 ntTSL 3 BASIC18.83■□□□□ 0.61
SHANK3Q9BYB0 AC093826.1-201ENST00000508655 993 ntBASIC18.83■□□□□ 0.61
SHANK3Q9BYB0 AC106047.2-201ENST00000511723 743 ntBASIC18.83■□□□□ 0.61
SHANK3Q9BYB0 AL132994.1-201ENST00000554098 400 ntBASIC18.83■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 42.6 ms