Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
LINC00477Q96M19 MYOM3-202ENST00000374434 5804 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
LINC00477Q96M19 ALOX15-202ENST00000570836 2784 ntAPPRIS P1 TSL 2 BASIC11.36□□□□□ -0.59
LINC00477Q96M19 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC11.36□□□□□ -0.59
LINC00477Q96M19 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC11.36□□□□□ -0.59
LINC00477Q96M19 SLC9A7P1-202ENST00000556476 2239 ntBASIC11.36□□□□□ -0.59
LINC00477Q96M19 GEMIN7-201ENST00000270257 1657 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
LINC00477Q96M19 PAPOLA-223ENST00000557320 3264 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
LINC00477Q96M19 UACA-201ENST00000322954 6939 ntAPPRIS P3 TSL 1 (best) BASIC11.36□□□□□ -0.59
LINC00477Q96M19 F8-201ENST00000330287 2620 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
LINC00477Q96M19 PPIL2-212ENST00000626352 2625 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
LINC00477Q96M19 SIGLEC9-202ENST00000440804 1960 ntAPPRIS ALT2 TSL 2 BASIC11.36□□□□□ -0.59
LINC00477Q96M19 COL8A2-201ENST00000303143 4447 ntAPPRIS P1 TSL 2 BASIC11.36□□□□□ -0.59
LINC00477Q96M19 PHTF1-202ENST00000369598 3000 ntTSL 5 BASIC11.35□□□□□ -0.59
LINC00477Q96M19 HTR7-203ENST00000371719 3033 ntAPPRIS ALT1 TSL 1 (best) BASIC11.35□□□□□ -0.59
LINC00477Q96M19 PML-208ENST00000436891 3010 ntAPPRIS ALT2 TSL 5 BASIC11.35□□□□□ -0.59
LINC00477Q96M19 CCT3-201ENST00000295688 2150 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
LINC00477Q96M19 DNM1-203ENST00000393594 3245 ntAPPRIS ALT1 TSL 2 BASIC11.35□□□□□ -0.59
LINC00477Q96M19 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC11.35□□□□□ -0.59
LINC00477Q96M19 USP28-214ENST00000545540 3431 ntTSL 2 BASIC11.35□□□□□ -0.59
LINC00477Q96M19 HSDL1-201ENST00000219439 3519 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
LINC00477Q96M19 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC11.35□□□□□ -0.59
LINC00477Q96M19 GRM1-203ENST00000361719 6754 ntAPPRIS P3 TSL 5 BASIC11.35□□□□□ -0.59
LINC00477Q96M19 KRBOX4-202ENST00000344302 2774 ntAPPRIS ALT2 TSL 2 BASIC11.35□□□□□ -0.59
LINC00477Q96M19 AL391244.1-206ENST00000447725 1843 ntTSL 5 BASIC11.35□□□□□ -0.59
LINC00477Q96M19 AC114490.1-201ENST00000417456 3163 ntTSL 2 BASIC11.35□□□□□ -0.59
LINC00477Q96M19 KLHL9-201ENST00000359039 5710 ntAPPRIS P1 BASIC11.35□□□□□ -0.59
LINC00477Q96M19 ARHGAP45-201ENST00000313093 4273 ntAPPRIS P3 TSL 1 (best) BASIC11.35□□□□□ -0.59
LINC00477Q96M19 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC11.35□□□□□ -0.59
LINC00477Q96M19 MAPK4-201ENST00000400384 4770 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
LINC00477Q96M19 TET3-201ENST00000305799 5174 ntTSL 5 BASIC11.35□□□□□ -0.59
LINC00477Q96M19 SLC25A29-208ENST00000554912 5169 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
LINC00477Q96M19 UCKL1-AS1-201ENST00000623569 3602 ntBASIC11.35□□□□□ -0.59
LINC00477Q96M19 AL139400.1-201ENST00000366220 510 ntBASIC11.35□□□□□ -0.59
LINC00477Q96M19 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC11.35□□□□□ -0.59
LINC00477Q96M19 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
LINC00477Q96M19 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC11.35□□□□□ -0.59
LINC00477Q96M19 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC11.35□□□□□ -0.59
LINC00477Q96M19 KRT18P13-201ENST00000400056 1290 ntBASIC11.35□□□□□ -0.59
LINC00477Q96M19 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC11.35□□□□□ -0.59
LINC00477Q96M19 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC11.35□□□□□ -0.59
LINC00477Q96M19 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
LINC00477Q96M19 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC11.35□□□□□ -0.59
LINC00477Q96M19 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC11.35□□□□□ -0.59
LINC00477Q96M19 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC11.35□□□□□ -0.59
LINC00477Q96M19 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC11.35□□□□□ -0.59
LINC00477Q96M19 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC11.35□□□□□ -0.59
LINC00477Q96M19 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
LINC00477Q96M19 TPT1P11-201ENST00000458482 498 ntBASIC11.35□□□□□ -0.59
LINC00477Q96M19 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC11.35□□□□□ -0.59
LINC00477Q96M19 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC11.35□□□□□ -0.59
LINC00477Q96M19 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC11.35□□□□□ -0.59
LINC00477Q96M19 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC11.35□□□□□ -0.59
LINC00477Q96M19 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC11.35□□□□□ -0.59
LINC00477Q96M19 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC11.35□□□□□ -0.59
LINC00477Q96M19 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC11.35□□□□□ -0.59
LINC00477Q96M19 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC11.35□□□□□ -0.59
LINC00477Q96M19 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC11.35□□□□□ -0.59
LINC00477Q96M19 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC11.35□□□□□ -0.59
LINC00477Q96M19 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC11.35□□□□□ -0.59
LINC00477Q96M19 GPX4-206ENST00000588919 803 ntTSL 2 BASIC11.35□□□□□ -0.59
LINC00477Q96M19 DKKL1-202ENST00000594268 524 ntAPPRIS ALT2 TSL 2 BASIC11.35□□□□□ -0.59
LINC00477Q96M19 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC11.35□□□□□ -0.59
LINC00477Q96M19 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC11.35□□□□□ -0.59
LINC00477Q96M19 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC11.35□□□□□ -0.59
LINC00477Q96M19 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
LINC00477Q96M19 TNIK-204ENST00000436636 6970 ntAPPRIS P3 TSL 1 (best) BASIC11.35□□□□□ -0.59
LINC00477Q96M19 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC11.35□□□□□ -0.59
LINC00477Q96M19 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC11.35□□□□□ -0.59
LINC00477Q96M19 TMEM150A-203ENST00000409668 1776 ntAPPRIS P1 TSL 2 BASIC11.35□□□□□ -0.59
LINC00477Q96M19 CBX3-202ENST00000396386 1857 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
LINC00477Q96M19 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
LINC00477Q96M19 TFAP2A-213ENST00000482890 2071 ntAPPRIS P3 TSL 5 BASIC11.35□□□□□ -0.59
LINC00477Q96M19 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
LINC00477Q96M19 ARHGEF26-AS1-204ENST00000491862 2598 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
LINC00477Q96M19 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC11.35□□□□□ -0.59
LINC00477Q96M19 FER1L4-213ENST00000621044 2778 ntTSL 2 BASIC11.35□□□□□ -0.59
LINC00477Q96M19 MOCS1-205ENST00000373195 2852 ntTSL 2 BASIC11.35□□□□□ -0.59
LINC00477Q96M19 GTF2H2C-210ENST00000510979 2952 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
LINC00477Q96M19 AC009690.1-201ENST00000379915 4374 ntAPPRIS P1 TSL 2 BASIC11.35□□□□□ -0.59
LINC00477Q96M19 FAM98B-202ENST00000397609 4388 ntAPPRIS P2 TSL 5 BASIC11.35□□□□□ -0.59
LINC00477Q96M19 VTI1B-204ENST00000554659 5351 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
LINC00477Q96M19 PXDN-201ENST00000252804 6808 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
LINC00477Q96M19 PARVB-201ENST00000338758 5429 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
LINC00477Q96M19 THSD4-201ENST00000261862 3133 ntTSL 5 BASIC11.35□□□□□ -0.59
LINC00477Q96M19 AC139749.1-202ENST00000617529 3139 ntBASIC11.35□□□□□ -0.59
LINC00477Q96M19 SEPT9-208ENST00000541152 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC11.35□□□□□ -0.59
LINC00477Q96M19 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC11.35□□□□□ -0.59
LINC00477Q96M19 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
LINC00477Q96M19 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC11.35□□□□□ -0.59
LINC00477Q96M19 MCRS1-211ENST00000550165 1936 ntAPPRIS P1 TSL 5 BASIC11.35□□□□□ -0.59
LINC00477Q96M19 FAM30A-205ENST00000630242 9612 ntTSL 2 BASIC11.35□□□□□ -0.59
LINC00477Q96M19 PLTP-201ENST00000354050 1731 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
LINC00477Q96M19 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC11.35□□□□□ -0.59
LINC00477Q96M19 TAGLN2-202ENST00000368096 1603 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
LINC00477Q96M19 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
LINC00477Q96M19 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
LINC00477Q96M19 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
LINC00477Q96M19 CACNA1I-202ENST00000402142 10004 ntAPPRIS P4 TSL 1 (best) BASIC11.34□□□□□ -0.59
LINC00477Q96M19 STAM-202ENST00000377524 2972 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Retrieved 100 of 98,524 protein–RNA pairs in 159.1 ms