Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 KRT17-201ENST00000311208 1524 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
HMGB4Q8WW32 AC011840.2-201ENST00000563063 1520 ntBASIC15.08■□□□□ 0.01
HMGB4Q8WW32 REXO1L4P-201ENST00000605109 1937 ntBASIC15.08■□□□□ 0
HMGB4Q8WW32 ELF2-201ENST00000358635 3036 ntTSL 1 (best) BASIC15.08■□□□□ 0
HMGB4Q8WW32 OIT3-202ENST00000622652 1602 ntTSL 1 (best) BASIC15.08■□□□□ 0
HMGB4Q8WW32 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC15.08■□□□□ 0
HMGB4Q8WW32 COMMD4-201ENST00000267935 1067 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
HMGB4Q8WW32 FZR1-201ENST00000313639 1215 ntTSL 1 (best) BASIC15.08■□□□□ 0
HMGB4Q8WW32 COMMD4-202ENST00000338995 722 ntTSL 2 BASIC15.08■□□□□ 0
HMGB4Q8WW32 FGF14-202ENST00000376143 744 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
HMGB4Q8WW32 IYD-204ENST00000392255 1180 ntTSL 1 (best) BASIC15.08■□□□□ 0
HMGB4Q8WW32 CD8A-204ENST00000409781 597 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0
HMGB4Q8WW32 AC007274.2-201ENST00000421675 662 ntBASIC15.08■□□□□ 0
HMGB4Q8WW32 AC083949.1-201ENST00000422013 657 ntTSL 3 BASIC15.08■□□□□ 0
HMGB4Q8WW32 AL136361.1-201ENST00000435429 506 ntTSL 3 BASIC15.08■□□□□ 0
HMGB4Q8WW32 MAGEA5-201ENST00000446757 942 ntBASIC15.08■□□□□ 0
HMGB4Q8WW32 EEF1DP6-201ENST00000449232 372 ntBASIC15.08■□□□□ 0
HMGB4Q8WW32 AC009403.1-204ENST00000469539 597 ntTSL 2 BASIC15.08■□□□□ 0
HMGB4Q8WW32 AC018680.1-202ENST00000500324 525 ntTSL 3 BASIC15.08■□□□□ 0
HMGB4Q8WW32 HHIP-AS1-201ENST00000503066 897 ntTSL 5 BASIC15.08■□□□□ 0
HMGB4Q8WW32 AC008438.1-201ENST00000507521 549 ntTSL 2 BASIC15.08■□□□□ 0
HMGB4Q8WW32 AC124301.1-201ENST00000524885 602 ntTSL 3 BASIC15.08■□□□□ 0
HMGB4Q8WW32 AP003065.1-201ENST00000540912 562 ntTSL 4 BASIC15.08■□□□□ 0
HMGB4Q8WW32 COMMD4-211ENST00000564815 639 ntTSL 3 BASIC15.08■□□□□ 0
HMGB4Q8WW32 MIR4783-201ENST00000580343 82 ntBASIC15.08■□□□□ 0
HMGB4Q8WW32 RANGRF-205ENST00000580434 749 ntTSL 1 (best) BASIC15.08■□□□□ 0
HMGB4Q8WW32 SELENOW-204ENST00000595615 535 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
HMGB4Q8WW32 AC008763.2-203ENST00000595866 762 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0
HMGB4Q8WW32 AC009955.4-201ENST00000597192 544 ntBASIC15.08■□□□□ 0
HMGB4Q8WW32 AC090164.2-201ENST00000611487 516 ntBASIC15.08■□□□□ 0
HMGB4Q8WW32 SELENOW-216ENST00000612212 875 ntTSL 5 BASIC15.08■□□□□ 0
HMGB4Q8WW32 SIRT2-219ENST00000613542 1170 ntTSL 5 BASIC15.08■□□□□ 0
HMGB4Q8WW32 AC079336.7-201ENST00000623428 1078 ntBASIC15.08■□□□□ 0
HMGB4Q8WW32 SNX1-214ENST00000625244 324 ntTSL 5 BASIC15.08■□□□□ 0
HMGB4Q8WW32 PCBP2-OT1-201ENST00000634357 590 ntBASIC15.08■□□□□ 0
HMGB4Q8WW32 AC068587.8-201ENST00000641239 219 ntBASIC15.08■□□□□ 0
HMGB4Q8WW32 OTUD7A-201ENST00000307050 10770 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
HMGB4Q8WW32 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC15.08■□□□□ 0
HMGB4Q8WW32 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC15.08■□□□□ 0
HMGB4Q8WW32 WDR45-224ENST00000485908 1301 ntTSL 5 BASIC15.08■□□□□ 0
HMGB4Q8WW32 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC15.08■□□□□ 0
HMGB4Q8WW32 PCOLCE-201ENST00000223061 1702 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
HMGB4Q8WW32 PGBD5-201ENST00000391860 10961 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
HMGB4Q8WW32 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
HMGB4Q8WW32 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC15.08■□□□□ 0
HMGB4Q8WW32 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC15.08■□□□□ 0
HMGB4Q8WW32 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
HMGB4Q8WW32 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC15.08■□□□□ 0
HMGB4Q8WW32 CLASP2-203ENST00000359576 7141 ntAPPRIS P5 TSL 5 BASIC15.08■□□□□ 0
HMGB4Q8WW32 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC15.08■□□□□ 0
HMGB4Q8WW32 CHD1L-203ENST00000369259 2358 ntTSL 1 (best) BASIC15.07■□□□□ 0
HMGB4Q8WW32 C4A-243ENST00000428956 5460 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
HMGB4Q8WW32 C4B-202ENST00000435363 5460 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
HMGB4Q8WW32 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
HMGB4Q8WW32 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC15.07■□□□□ 0
HMGB4Q8WW32 IPPK-201ENST00000287996 4401 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
HMGB4Q8WW32 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
HMGB4Q8WW32 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
HMGB4Q8WW32 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC15.07■□□□□ 0
HMGB4Q8WW32 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC15.07■□□□□ 0
HMGB4Q8WW32 DYM-201ENST00000269445 5049 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
HMGB4Q8WW32 AL157791.1-201ENST00000553667 1699 ntBASIC15.07■□□□□ 0
HMGB4Q8WW32 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC15.07■□□□□ 0
HMGB4Q8WW32 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC15.07■□□□□ 0
HMGB4Q8WW32 AGTPBP1-208ENST00000628899 4222 ntTSL 2 BASIC15.07■□□□□ 0
HMGB4Q8WW32 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
HMGB4Q8WW32 SERPING1-204ENST00000378324 1751 ntAPPRIS ALT2 TSL 2 BASIC15.07■□□□□ 0
HMGB4Q8WW32 TSPO-203ENST00000396265 1075 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
HMGB4Q8WW32 AL645608.5-201ENST00000398216 443 ntTSL 3 BASIC15.07■□□□□ 0
HMGB4Q8WW32 CMC1-204ENST00000423894 549 ntTSL 2 BASIC15.07■□□□□ 0
HMGB4Q8WW32 PMP22-206ENST00000494511 872 ntTSL 1 (best) BASIC15.07■□□□□ 0
HMGB4Q8WW32 MARK2P5-201ENST00000507649 634 ntBASIC15.07■□□□□ 0
HMGB4Q8WW32 NKX3-1-202ENST00000523261 713 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
HMGB4Q8WW32 AF111169.4-201ENST00000556368 749 ntTSL 2 BASIC15.07■□□□□ 0
HMGB4Q8WW32 AL132642.1-201ENST00000557646 553 ntTSL 4 BASIC15.07■□□□□ 0
HMGB4Q8WW32 AC016044.1-201ENST00000560818 572 ntTSL 4 BASIC15.07■□□□□ 0
HMGB4Q8WW32 MIR4722-201ENST00000578292 60 ntBASIC15.07■□□□□ 0
HMGB4Q8WW32 RPS15-202ENST00000585665 467 ntTSL 3 BASIC15.07■□□□□ 0
HMGB4Q8WW32 AL133499.1-201ENST00000596207 608 ntBASIC15.07■□□□□ 0
HMGB4Q8WW32 AC008763.1-201ENST00000601797 843 ntTSL 3 BASIC15.07■□□□□ 0
HMGB4Q8WW32 AC128714.1-201ENST00000637035 887 ntBASIC15.07■□□□□ 0
HMGB4Q8WW32 MPP6-201ENST00000222644 8452 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
HMGB4Q8WW32 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC15.07■□□□□ 0
HMGB4Q8WW32 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC15.07■□□□□ 0
HMGB4Q8WW32 BCL2L13-206ENST00000399782 1381 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
HMGB4Q8WW32 AC010547.4-201ENST00000561754 1378 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
HMGB4Q8WW32 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
HMGB4Q8WW32 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC15.07■□□□□ 0
HMGB4Q8WW32 ASIC1-202ENST00000447966 3778 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
HMGB4Q8WW32 AC103702.1-201ENST00000548801 2630 ntBASIC15.07■□□□□ 0
HMGB4Q8WW32 TMEM9-204ENST00000367334 1529 ntAPPRIS P3 TSL 1 (best) BASIC15.07■□□□□ 0
HMGB4Q8WW32 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
HMGB4Q8WW32 TBC1D25-201ENST00000376771 4042 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
HMGB4Q8WW32 RCC2-202ENST00000375436 4087 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
HMGB4Q8WW32 NF2-210ENST00000413209 4733 ntTSL 1 (best) BASIC15.07■□□□□ 0
HMGB4Q8WW32 AQP6-204ENST00000615425 2245 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
HMGB4Q8WW32 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC15.07■□□□□ 0
HMGB4Q8WW32 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC15.06■□□□□ 0
HMGB4Q8WW32 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC15.06■□□□□ 0
HMGB4Q8WW32 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Retrieved 100 of 98,524 protein–RNA pairs in 42.2 ms