Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 AC090616.6-203ENST00000579186 1945 ntBASIC15.52■□□□□ 0.07
NPAS3Q8IXF0 MVK-214ENST00000629016 1591 ntTSL 5 BASIC15.52■□□□□ 0.07
NPAS3Q8IXF0 AMT-239ENST00000636865 1914 ntTSL 5 BASIC15.52■□□□□ 0.07
NPAS3Q8IXF0 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
NPAS3Q8IXF0 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC15.52■□□□□ 0.07
NPAS3Q8IXF0 CRLF2-201ENST00000381566 1545 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.07
NPAS3Q8IXF0 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
NPAS3Q8IXF0 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
NPAS3Q8IXF0 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
NPAS3Q8IXF0 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
NPAS3Q8IXF0 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
NPAS3Q8IXF0 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
NPAS3Q8IXF0 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.07
NPAS3Q8IXF0 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
NPAS3Q8IXF0 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC15.51■□□□□ 0.07
NPAS3Q8IXF0 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
NPAS3Q8IXF0 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
NPAS3Q8IXF0 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC15.51■□□□□ 0.07
NPAS3Q8IXF0 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
NPAS3Q8IXF0 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
NPAS3Q8IXF0 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC15.51■□□□□ 0.07
NPAS3Q8IXF0 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
NPAS3Q8IXF0 AWAT1-201ENST00000374521 1365 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
NPAS3Q8IXF0 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
NPAS3Q8IXF0 TPCN1-201ENST00000335509 5274 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
NPAS3Q8IXF0 UBE2V2-205ENST00000521346 1322 ntTSL 3 BASIC15.51■□□□□ 0.07
NPAS3Q8IXF0 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
NPAS3Q8IXF0 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC15.51■□□□□ 0.07
NPAS3Q8IXF0 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
NPAS3Q8IXF0 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
NPAS3Q8IXF0 TCEAL6-201ENST00000372773 983 ntAPPRIS P1 TSL 3 BASIC15.51■□□□□ 0.07
NPAS3Q8IXF0 SERPINE3-201ENST00000400389 1218 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
NPAS3Q8IXF0 AC060234.1-201ENST00000422966 474 ntTSL 3 BASIC15.51■□□□□ 0.07
NPAS3Q8IXF0 AC069218.1-201ENST00000435269 762 ntBASIC15.51■□□□□ 0.07
NPAS3Q8IXF0 AC012441.2-201ENST00000444843 739 ntBASIC15.51■□□□□ 0.07
NPAS3Q8IXF0 AL353637.1-201ENST00000451571 732 ntBASIC15.51■□□□□ 0.07
NPAS3Q8IXF0 CEP164P1-201ENST00000455142 418 ntBASIC15.51■□□□□ 0.07
NPAS3Q8IXF0 CPLX2-209ENST00000515094 576 ntAPPRIS P1 TSL 4 BASIC15.51■□□□□ 0.07
NPAS3Q8IXF0 AC127024.2-201ENST00000581019 789 ntTSL 5 BASIC15.51■□□□□ 0.07
NPAS3Q8IXF0 AC011498.6-201ENST00000592034 510 ntTSL 5 BASIC15.51■□□□□ 0.07
NPAS3Q8IXF0 LINC01517-203ENST00000616194 908 ntTSL 5 BASIC15.51■□□□□ 0.07
NPAS3Q8IXF0 CDK7-214ENST00000626796 358 ntTSL 5 BASIC15.51■□□□□ 0.07
NPAS3Q8IXF0 CDK7-215ENST00000629350 1149 ntTSL 5 BASIC15.51■□□□□ 0.07
NPAS3Q8IXF0 AC092850.2-201ENST00000623821 2697 ntBASIC15.51■□□□□ 0.07
NPAS3Q8IXF0 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC15.51■□□□□ 0.07
NPAS3Q8IXF0 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
NPAS3Q8IXF0 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC15.51■□□□□ 0.07
NPAS3Q8IXF0 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
NPAS3Q8IXF0 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
NPAS3Q8IXF0 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC15.51■□□□□ 0.07
NPAS3Q8IXF0 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
NPAS3Q8IXF0 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC15.51■□□□□ 0.07
NPAS3Q8IXF0 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC15.51■□□□□ 0.07
NPAS3Q8IXF0 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
NPAS3Q8IXF0 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
NPAS3Q8IXF0 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC15.51■□□□□ 0.07
NPAS3Q8IXF0 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
NPAS3Q8IXF0 AC006058.4-201ENST00000624016 1670 ntBASIC15.51■□□□□ 0.07
NPAS3Q8IXF0 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC15.51■□□□□ 0.07
NPAS3Q8IXF0 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
NPAS3Q8IXF0 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
NPAS3Q8IXF0 PEF1-201ENST00000373703 1629 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
NPAS3Q8IXF0 AMT-204ENST00000427987 1646 ntTSL 5 BASIC15.5■□□□□ 0.07
NPAS3Q8IXF0 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
NPAS3Q8IXF0 ATP6AP2-213ENST00000636251 1877 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
NPAS3Q8IXF0 TLL1-204ENST00000507499 4818 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
NPAS3Q8IXF0 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
NPAS3Q8IXF0 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
NPAS3Q8IXF0 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
NPAS3Q8IXF0 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC15.5■□□□□ 0.07
NPAS3Q8IXF0 YIPF3-202ENST00000372422 1576 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
NPAS3Q8IXF0 UROD-201ENST00000246337 1300 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
NPAS3Q8IXF0 AL008718.2-201ENST00000609206 1313 ntBASIC15.5■□□□□ 0.07
NPAS3Q8IXF0 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
NPAS3Q8IXF0 HLA-DQB2-231ENST00000435145 2026 ntBASIC15.5■□□□□ 0.07
NPAS3Q8IXF0 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC15.5■□□□□ 0.07
NPAS3Q8IXF0 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
NPAS3Q8IXF0 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
NPAS3Q8IXF0 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
NPAS3Q8IXF0 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
NPAS3Q8IXF0 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
NPAS3Q8IXF0 IGF1-201ENST00000307046 1097 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
NPAS3Q8IXF0 NQO2-202ENST00000380430 1098 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
NPAS3Q8IXF0 IGF1-203ENST00000392904 761 ntTSL 5 BASIC15.5■□□□□ 0.07
NPAS3Q8IXF0 SERF2-209ENST00000409646 559 ntTSL 4 BASIC15.5■□□□□ 0.07
NPAS3Q8IXF0 AL139010.1-202ENST00000452528 1041 ntTSL 2 BASIC15.5■□□□□ 0.07
NPAS3Q8IXF0 ARMCX3-AS1-201ENST00000454228 490 ntTSL 3 BASIC15.5■□□□□ 0.07
NPAS3Q8IXF0 LYRM4-206ENST00000468929 1168 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
NPAS3Q8IXF0 SRSF10-211ENST00000484146 1089 ntTSL 2 BASIC15.5■□□□□ 0.07
NPAS3Q8IXF0 BHMT-206ENST00000524080 1207 ntTSL 2 BASIC15.5■□□□□ 0.07
NPAS3Q8IXF0 RTN3P1-201ENST00000536295 711 ntBASIC15.5■□□□□ 0.07
NPAS3Q8IXF0 SNHG14-213ENST00000551077 638 ntTSL 5 BASIC15.5■□□□□ 0.07
NPAS3Q8IXF0 PIGH-209ENST00000559581 1049 ntTSL 4 BASIC15.5■□□□□ 0.07
NPAS3Q8IXF0 ANKRD11-208ENST00000563291 593 ntTSL 5 BASIC15.5■□□□□ 0.07
NPAS3Q8IXF0 FAAP24-204ENST00000590179 784 ntTSL 2 BASIC15.5■□□□□ 0.07
NPAS3Q8IXF0 AC008825.2-201ENST00000603374 718 ntBASIC15.5■□□□□ 0.07
NPAS3Q8IXF0 AC012044.1-201ENST00000603431 297 ntBASIC15.5■□□□□ 0.07
NPAS3Q8IXF0 AC018635.2-201ENST00000608625 364 ntBASIC15.5■□□□□ 0.07
NPAS3Q8IXF0 PAX4-207ENST00000611453 1235 ntTSL 5 BASIC15.5■□□□□ 0.07
NPAS3Q8IXF0 MIR7845-201ENST00000618396 99 ntBASIC15.5■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 33.2 ms