Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CCDC60Q8IWA6 FBXO5-202ENST00000367241 2221 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
CCDC60Q8IWA6 CRHBP-201ENST00000274368 1980 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CCDC60Q8IWA6 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
CCDC60Q8IWA6 CAMK2B-206ENST00000353625 1624 ntAPPRIS ALT1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CCDC60Q8IWA6 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
CCDC60Q8IWA6 TLL1-204ENST00000507499 4818 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
CCDC60Q8IWA6 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC16.67■□□□□ 0.26
CCDC60Q8IWA6 CNBP-208ENST00000504813 1549 ntAPPRIS ALT1 TSL 2 BASIC16.67■□□□□ 0.26
CCDC60Q8IWA6 SNAP91-205ENST00000439399 4452 ntAPPRIS P2 TSL 5 BASIC16.67■□□□□ 0.26
CCDC60Q8IWA6 ETNPPL-201ENST00000296486 2099 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
CCDC60Q8IWA6 ALG3-207ENST00000455059 1697 ntTSL 5 BASIC16.67■□□□□ 0.26
CCDC60Q8IWA6 AKIP1-201ENST00000299576 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
CCDC60Q8IWA6 PSME1-202ENST00000382708 1136 ntTSL 2 BASIC16.67■□□□□ 0.26
CCDC60Q8IWA6 HNRNPA1P32-201ENST00000396326 963 ntBASIC16.67■□□□□ 0.26
CCDC60Q8IWA6 SUMO1-204ENST00000409181 784 ntTSL 3 BASIC16.67■□□□□ 0.26
CCDC60Q8IWA6 SUMO1-207ENST00000409498 779 ntTSL 3 BASIC16.67■□□□□ 0.26
CCDC60Q8IWA6 AL355994.3-201ENST00000437156 466 ntTSL 2 BASIC16.67■□□□□ 0.26
CCDC60Q8IWA6 PRCD-210ENST00000592014 462 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CCDC60Q8IWA6 AC009955.4-201ENST00000597192 544 ntBASIC16.67■□□□□ 0.26
CCDC60Q8IWA6 AC007663.3-201ENST00000609632 465 ntBASIC16.67■□□□□ 0.26
CCDC60Q8IWA6 MLLT10-216ENST00000621220 381 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
CCDC60Q8IWA6 LINC01672-205ENST00000635092 633 ntTSL 5 BASIC16.67■□□□□ 0.26
CCDC60Q8IWA6 SENP6-205ENST00000447266 6501 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
CCDC60Q8IWA6 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CCDC60Q8IWA6 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CCDC60Q8IWA6 YWHAE-208ENST00000571732 1818 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
CCDC60Q8IWA6 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CCDC60Q8IWA6 MEOX1-202ENST00000329168 2129 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
CCDC60Q8IWA6 CERK-201ENST00000216264 4450 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CCDC60Q8IWA6 SHC1P1-201ENST00000425230 1745 ntBASIC16.67■□□□□ 0.26
CCDC60Q8IWA6 PITPNC1-203ENST00000580974 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
CCDC60Q8IWA6 ATP6AP2-213ENST00000636251 1877 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
CCDC60Q8IWA6 IGHA2-202ENST00000497872 1320 ntAPPRIS P5 TSL 1 (best) BASIC16.67■□□□□ 0.26
CCDC60Q8IWA6 ZNF711-201ENST00000276123 2887 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
CCDC60Q8IWA6 SLC25A19-202ENST00000375261 1486 ntTSL 5 BASIC16.67■□□□□ 0.26
CCDC60Q8IWA6 PELP1-208ENST00000572293 5272 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
CCDC60Q8IWA6 SF1-209ENST00000433274 2317 ntTSL 2 BASIC16.67■□□□□ 0.26
CCDC60Q8IWA6 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
CCDC60Q8IWA6 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CCDC60Q8IWA6 ZCCHC4-201ENST00000302874 2785 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CCDC60Q8IWA6 B4GALT3-201ENST00000319769 1911 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CCDC60Q8IWA6 ZNF134-201ENST00000396161 4914 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CCDC60Q8IWA6 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC16.66■□□□□ 0.26
CCDC60Q8IWA6 AC023157.3-201ENST00000619086 2088 ntBASIC16.66■□□□□ 0.26
CCDC60Q8IWA6 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CCDC60Q8IWA6 ATG9B-212ENST00000639579 4539 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CCDC60Q8IWA6 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CCDC60Q8IWA6 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC16.66■□□□□ 0.26
CCDC60Q8IWA6 AC010547.4-201ENST00000561754 1378 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
CCDC60Q8IWA6 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
CCDC60Q8IWA6 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CCDC60Q8IWA6 TSPOAP1-202ENST00000343736 5947 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
CCDC60Q8IWA6 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC16.66■□□□□ 0.26
CCDC60Q8IWA6 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC16.66■□□□□ 0.26
CCDC60Q8IWA6 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC16.66■□□□□ 0.26
CCDC60Q8IWA6 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CCDC60Q8IWA6 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CCDC60Q8IWA6 FGF14-202ENST00000376143 744 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CCDC60Q8IWA6 AC010141.1-201ENST00000411585 623 ntBASIC16.66■□□□□ 0.26
CCDC60Q8IWA6 E2F3P2-201ENST00000447755 1422 ntBASIC16.66■□□□□ 0.26
CCDC60Q8IWA6 AC018685.1-201ENST00000457813 368 ntTSL 3 BASIC16.66■□□□□ 0.26
CCDC60Q8IWA6 APOPT1-207ENST00000477116 906 ntTSL 3 BASIC16.66■□□□□ 0.26
CCDC60Q8IWA6 FAM153B-214ENST00000512862 1071 ntAPPRIS ALT2 TSL 2 BASIC16.66■□□□□ 0.26
CCDC60Q8IWA6 ORAOV1-211ENST00000542341 775 ntTSL 2 BASIC16.66■□□□□ 0.26
CCDC60Q8IWA6 TMEM208-207ENST00000563953 887 ntTSL 2 BASIC16.66■□□□□ 0.26
CCDC60Q8IWA6 AC103810.3-201ENST00000583567 96 ntBASIC16.66■□□□□ 0.26
CCDC60Q8IWA6 MRPL34-203ENST00000595444 863 ntAPPRIS ALT2 TSL 3 BASIC16.66■□□□□ 0.26
CCDC60Q8IWA6 PTOV1-214ENST00000600603 1443 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
CCDC60Q8IWA6 STPG3-204ENST00000611378 1015 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
CCDC60Q8IWA6 PAK6-203ENST00000542403 2540 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CCDC60Q8IWA6 DMTN-204ENST00000415253 2394 ntTSL 5 BASIC16.66■□□□□ 0.26
CCDC60Q8IWA6 ZNF7-202ENST00000446747 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
CCDC60Q8IWA6 ZNF79-201ENST00000342483 2078 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CCDC60Q8IWA6 SIGLEC7-202ENST00000317643 1754 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CCDC60Q8IWA6 GSN-215ENST00000545652 2428 ntTSL 2 BASIC16.66■□□□□ 0.26
CCDC60Q8IWA6 ZMYND15-204ENST00000573751 2409 ntTSL 2 BASIC16.66■□□□□ 0.26
CCDC60Q8IWA6 API5-203ENST00000455725 2257 ntTSL 2 BASIC16.66■□□□□ 0.26
CCDC60Q8IWA6 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
CCDC60Q8IWA6 JKAMP-207ENST00000554271 2137 ntTSL 2 BASIC16.66■□□□□ 0.26
CCDC60Q8IWA6 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
CCDC60Q8IWA6 LINC01107-201ENST00000446979 1975 ntTSL 2 BASIC16.66■□□□□ 0.26
CCDC60Q8IWA6 CLEC18C-210ENST00000569347 1970 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
CCDC60Q8IWA6 SMYD1-203ENST00000444564 1816 ntTSL 5 BASIC16.66■□□□□ 0.26
CCDC60Q8IWA6 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC16.65■□□□□ 0.26
CCDC60Q8IWA6 ENDOU-203ENST00000545824 1513 ntTSL 2 BASIC16.65■□□□□ 0.26
CCDC60Q8IWA6 AL133338.1-201ENST00000565695 1517 ntBASIC16.65■□□□□ 0.26
CCDC60Q8IWA6 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC60Q8IWA6 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC16.65■□□□□ 0.26
CCDC60Q8IWA6 CICP23-201ENST00000605013 2741 ntBASIC16.65■□□□□ 0.26
CCDC60Q8IWA6 TOM1L2-205ENST00000478943 2098 ntTSL 2 BASIC16.65■□□□□ 0.26
CCDC60Q8IWA6 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC60Q8IWA6 ERRFI1-201ENST00000377482 3104 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC60Q8IWA6 FIS1-201ENST00000223136 734 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC60Q8IWA6 C11orf52-201ENST00000278601 1141 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC60Q8IWA6 KRTAP21-2-201ENST00000333892 440 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
CCDC60Q8IWA6 MRPL43-206ENST00000370236 866 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
CCDC60Q8IWA6 MRPL43-207ENST00000370241 824 ntTSL 5 BASIC16.65■□□□□ 0.26
CCDC60Q8IWA6 CD8B-204ENST00000393759 1096 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC60Q8IWA6 TMEM107-203ENST00000431792 455 ntTSL 3 BASIC16.65■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 89 ms