Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC18.03■□□□□ 0.48
CCDC88AQ3V6T2 NDUFB11-202ENST00000377811 1388 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC88AQ3V6T2 NDUFB6-203ENST00000379847 1366 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC88AQ3V6T2 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC18.03■□□□□ 0.48
CCDC88AQ3V6T2 AL360270.3-201ENST00000609118 1348 ntBASIC18.03■□□□□ 0.48
CCDC88AQ3V6T2 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC18.03■□□□□ 0.48
CCDC88AQ3V6T2 FAM3B-201ENST00000357985 1088 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC88AQ3V6T2 NACA-202ENST00000393891 1059 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC88AQ3V6T2 PPM1N-201ENST00000396735 895 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC88AQ3V6T2 PPM1N-208ENST00000456399 618 ntTSL 3 BASIC18.03■□□□□ 0.48
CCDC88AQ3V6T2 AC034231.1-201ENST00000507251 537 ntTSL 4 BASIC18.03■□□□□ 0.48
CCDC88AQ3V6T2 AP005264.3-201ENST00000592370 485 ntTSL 5 BASIC18.03■□□□□ 0.48
CCDC88AQ3V6T2 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC88AQ3V6T2 CPSF7-202ENST00000394888 3650 ntAPPRIS P4 TSL 2 BASIC18.03■□□□□ 0.48
CCDC88AQ3V6T2 AL109954.1-202ENST00000564051 2148 ntBASIC18.03■□□□□ 0.48
CCDC88AQ3V6T2 CCDC169-SOHLH2-201ENST00000511166 2051 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
CCDC88AQ3V6T2 PCDHGB8P-201ENST00000502926 1973 ntBASIC18.02■□□□□ 0.48
CCDC88AQ3V6T2 SMYD1-203ENST00000444564 1816 ntTSL 5 BASIC18.02■□□□□ 0.48
CCDC88AQ3V6T2 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CCDC88AQ3V6T2 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
CCDC88AQ3V6T2 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CCDC88AQ3V6T2 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CCDC88AQ3V6T2 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC18.02■□□□□ 0.48
CCDC88AQ3V6T2 ZNF7-202ENST00000446747 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
CCDC88AQ3V6T2 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CCDC88AQ3V6T2 CTSL-201ENST00000340342 1436 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CCDC88AQ3V6T2 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CCDC88AQ3V6T2 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CCDC88AQ3V6T2 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC18.02■□□□□ 0.48
CCDC88AQ3V6T2 CRYBB3-202ENST00000404334 601 ntTSL 3 BASIC18.02■□□□□ 0.48
CCDC88AQ3V6T2 TRPM2-AS-201ENST00000423310 586 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CCDC88AQ3V6T2 AC156455.1-203ENST00000423999 893 ntTSL 2 BASIC18.02■□□□□ 0.48
CCDC88AQ3V6T2 AC233724.6-201ENST00000503184 1088 ntAPPRIS P1 BASIC18.02■□□□□ 0.48
CCDC88AQ3V6T2 TMEM126A-203ENST00000528105 656 ntTSL 2 BASIC18.02■□□□□ 0.48
CCDC88AQ3V6T2 AC012645.2-201ENST00000566190 553 ntTSL 4 BASIC18.02■□□□□ 0.48
CCDC88AQ3V6T2 MIR6720-201ENST00000611664 98 ntBASIC18.02■□□□□ 0.48
CCDC88AQ3V6T2 AL136040.2-201ENST00000618431 1130 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CCDC88AQ3V6T2 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CCDC88AQ3V6T2 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CCDC88AQ3V6T2 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CCDC88AQ3V6T2 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.47
CCDC88AQ3V6T2 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
CCDC88AQ3V6T2 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
CCDC88AQ3V6T2 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
CCDC88AQ3V6T2 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC18.02■□□□□ 0.47
CCDC88AQ3V6T2 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC18.02■□□□□ 0.47
CCDC88AQ3V6T2 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
CCDC88AQ3V6T2 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.47
CCDC88AQ3V6T2 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC18.02■□□□□ 0.47
CCDC88AQ3V6T2 LIPE-AS1-204ENST00000594624 1448 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
CCDC88AQ3V6T2 LYRM1-203ENST00000412082 1399 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CCDC88AQ3V6T2 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
CCDC88AQ3V6T2 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC18.01■□□□□ 0.47
CCDC88AQ3V6T2 SLC1A5-201ENST00000412532 1750 ntTSL 2 BASIC18.01■□□□□ 0.47
CCDC88AQ3V6T2 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CCDC88AQ3V6T2 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CCDC88AQ3V6T2 PDCD5-202ENST00000379316 154 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CCDC88AQ3V6T2 MAPK3-204ENST00000395200 997 ntTSL 3 BASIC18.01■□□□□ 0.47
CCDC88AQ3V6T2 C1QA-202ENST00000402322 976 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CCDC88AQ3V6T2 AC024293.1-201ENST00000467930 498 ntBASIC18.01■□□□□ 0.47
CCDC88AQ3V6T2 PGAM1P12-201ENST00000505622 748 ntBASIC18.01■□□□□ 0.47
CCDC88AQ3V6T2 AC114947.1-202ENST00000514136 344 ntBASIC18.01■□□□□ 0.47
CCDC88AQ3V6T2 HIST2H2BF-204ENST00000545683 999 ntTSL 2 BASIC18.01■□□□□ 0.47
CCDC88AQ3V6T2 PDCD5-208ENST00000592786 468 ntTSL 3 BASIC18.01■□□□□ 0.47
CCDC88AQ3V6T2 PGPEP1-206ENST00000597431 545 ntTSL 5 BASIC18.01■□□□□ 0.47
CCDC88AQ3V6T2 AC009884.2-201ENST00000603110 324 ntBASIC18.01■□□□□ 0.47
CCDC88AQ3V6T2 LINC01783-202ENST00000614408 828 ntBASIC18.01■□□□□ 0.47
CCDC88AQ3V6T2 BX284668.2-205ENST00000619677 828 ntBASIC18.01■□□□□ 0.47
CCDC88AQ3V6T2 AC079325.2-202ENST00000641031 462 ntAPPRIS ALT2 BASIC18.01■□□□□ 0.47
CCDC88AQ3V6T2 AC079325.2-201ENST00000641710 606 ntAPPRIS P5 BASIC18.01■□□□□ 0.47
CCDC88AQ3V6T2 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC18.01■□□□□ 0.47
CCDC88AQ3V6T2 YIPF3-202ENST00000372422 1576 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CCDC88AQ3V6T2 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CCDC88AQ3V6T2 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CCDC88AQ3V6T2 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CCDC88AQ3V6T2 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CCDC88AQ3V6T2 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CCDC88AQ3V6T2 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CCDC88AQ3V6T2 EWSR1-204ENST00000333395 1265 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CCDC88AQ3V6T2 EEF1B2-203ENST00000392222 1098 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CCDC88AQ3V6T2 AL512306.1-201ENST00000432698 848 ntBASIC18.01■□□□□ 0.47
CCDC88AQ3V6T2 AC114488.1-201ENST00000435872 591 ntTSL 3 BASIC18.01■□□□□ 0.47
CCDC88AQ3V6T2 AC244197.1-201ENST00000456494 951 ntBASIC18.01■□□□□ 0.47
CCDC88AQ3V6T2 RNA5SP417-201ENST00000516459 108 ntBASIC18.01■□□□□ 0.47
CCDC88AQ3V6T2 TCL1A-205ENST00000555202 717 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CCDC88AQ3V6T2 AC020636.2-201ENST00000569170 1189 ntAPPRIS P5 TSL 1 (best) BASIC18.01■□□□□ 0.47
CCDC88AQ3V6T2 AC010754.1-201ENST00000582300 1061 ntTSL 3 BASIC18.01■□□□□ 0.47
CCDC88AQ3V6T2 UXT-AS1-202ENST00000591832 565 ntTSL 4 BASIC18.01■□□□□ 0.47
CCDC88AQ3V6T2 AC022001.2-201ENST00000607849 580 ntTSL 2 BASIC18.01■□□□□ 0.47
CCDC88AQ3V6T2 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC18.01■□□□□ 0.47
CCDC88AQ3V6T2 BX005266.2-201ENST00000450704 1549 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CCDC88AQ3V6T2 HORMAD1-201ENST00000322343 1771 ntTSL 1 (best) BASIC18■□□□□ 0.47
CCDC88AQ3V6T2 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC18■□□□□ 0.47
CCDC88AQ3V6T2 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC18■□□□□ 0.47
CCDC88AQ3V6T2 SELENOS-201ENST00000398226 1439 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CCDC88AQ3V6T2 RABL2A-206ENST00000409842 1979 ntTSL 1 (best) BASIC18■□□□□ 0.47
CCDC88AQ3V6T2 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC18■□□□□ 0.47
CCDC88AQ3V6T2 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC18■□□□□ 0.47
CCDC88AQ3V6T2 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC18■□□□□ 0.47
CCDC88AQ3V6T2 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC18■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 49.6 ms