Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 TMEM9-203ENST00000367333 1564 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
SCN4AP35499 FAM86B1-216ENST00000533852 2043 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
SCN4AP35499 BSDC1-205ENST00000446293 1505 ntTSL 2 BASIC17.26■□□□□ 0.35
SCN4AP35499 ATP5A1-201ENST00000282050 1945 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
SCN4AP35499 METAP2-205ENST00000546753 1862 ntTSL 2 BASIC17.26■□□□□ 0.35
SCN4AP35499 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC17.26■□□□□ 0.35
SCN4AP35499 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SCN4AP35499 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC17.26■□□□□ 0.35
SCN4AP35499 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC17.26■□□□□ 0.35
SCN4AP35499 OPN1SW-201ENST00000249389 1096 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SCN4AP35499 C18orf21-202ENST00000333234 958 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
SCN4AP35499 MDH2-205ENST00000461263 648 ntTSL 2 BASIC17.26■□□□□ 0.35
SCN4AP35499 AC090136.2-201ENST00000517809 420 ntBASIC17.26■□□□□ 0.35
SCN4AP35499 WDYHV1-206ENST00000523356 869 ntTSL 3 BASIC17.26■□□□□ 0.35
SCN4AP35499 ZNF286A-212ENST00000580259 527 ntTSL 4 BASIC17.26■□□□□ 0.35
SCN4AP35499 KXD1-211ENST00000599319 707 ntAPPRIS P1 TSL 3 BASIC17.26■□□□□ 0.35
SCN4AP35499 AL591471.1-201ENST00000621855 229 ntBASIC17.26■□□□□ 0.35
SCN4AP35499 PSMA6-215ENST00000622405 978 ntTSL 2 BASIC17.26■□□□□ 0.35
SCN4AP35499 AC090386.2-201ENST00000623010 1039 ntBASIC17.26■□□□□ 0.35
SCN4AP35499 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC17.26■□□□□ 0.35
SCN4AP35499 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SCN4AP35499 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC17.26■□□□□ 0.35
SCN4AP35499 ARRB2-218ENST00000575877 1579 ntTSL 5 BASIC17.26■□□□□ 0.35
SCN4AP35499 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC17.25■□□□□ 0.35
SCN4AP35499 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC17.25■□□□□ 0.35
SCN4AP35499 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
SCN4AP35499 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
SCN4AP35499 PAIP2-201ENST00000265192 1459 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SCN4AP35499 ATAT1-206ENST00000376485 1476 ntAPPRIS ALT1 TSL 5 BASIC17.25■□□□□ 0.35
SCN4AP35499 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC17.25■□□□□ 0.35
SCN4AP35499 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC17.25■□□□□ 0.35
SCN4AP35499 SHANK2-202ENST00000357171 1373 ntTSL 5 BASIC17.25■□□□□ 0.35
SCN4AP35499 NIPAL3-202ENST00000339255 1676 ntTSL 5 BASIC17.25■□□□□ 0.35
SCN4AP35499 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SCN4AP35499 DHRS7-209ENST00000557185 1322 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SCN4AP35499 FBXL12-201ENST00000247977 1852 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SCN4AP35499 KRT18P4-201ENST00000422599 1288 ntBASIC17.25■□□□□ 0.35
SCN4AP35499 AC103702.2-203ENST00000425510 379 ntTSL 5 BASIC17.25■□□□□ 0.35
SCN4AP35499 RLN3-201ENST00000431365 580 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SCN4AP35499 EEF1DP5-201ENST00000431410 772 ntBASIC17.25■□□□□ 0.35
SCN4AP35499 AC108474.1-201ENST00000507776 421 ntTSL 3 BASIC17.25■□□□□ 0.35
SCN4AP35499 GLUD1P3-201ENST00000507952 896 ntTSL 2 BASIC17.25■□□□□ 0.35
SCN4AP35499 BCL2L12P1-201ENST00000508390 733 ntBASIC17.25■□□□□ 0.35
SCN4AP35499 AC095040.1-201ENST00000513286 675 ntBASIC17.25■□□□□ 0.35
SCN4AP35499 PMEL-214ENST00000550447 901 ntTSL 3 BASIC17.25■□□□□ 0.35
SCN4AP35499 AC012617.1-201ENST00000586345 797 ntTSL 2 BASIC17.25■□□□□ 0.35
SCN4AP35499 Metazoa_SRP.127-201ENST00000614914 302 ntBASIC17.25■□□□□ 0.35
SCN4AP35499 CTSV-201ENST00000259470 1546 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SCN4AP35499 ARMCX6-207ENST00000538627 1758 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
SCN4AP35499 ZNF576-202ENST00000391965 1468 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
SCN4AP35499 FBXO5-202ENST00000367241 2221 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
SCN4AP35499 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC17.25■□□□□ 0.35
SCN4AP35499 TRIM45-202ENST00000369461 2415 ntTSL 5 BASIC17.25■□□□□ 0.35
SCN4AP35499 P2RX5-207ENST00000551178 1863 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
SCN4AP35499 C3orf52-202ENST00000431717 2054 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
SCN4AP35499 FZD10-202ENST00000539839 3282 ntBASIC17.24■□□□□ 0.35
SCN4AP35499 HTR3E-203ENST00000425359 1326 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
SCN4AP35499 DEPDC7-201ENST00000241051 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SCN4AP35499 MPI-203ENST00000535694 1523 ntTSL 2 BASIC17.24■□□□□ 0.35
SCN4AP35499 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
SCN4AP35499 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SCN4AP35499 MRPL35-201ENST00000254644 1061 ntAPPRIS ALT1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SCN4AP35499 MED11-201ENST00000293777 833 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SCN4AP35499 LST1-204ENST00000376086 554 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
SCN4AP35499 SNORA57-201ENST00000383870 149 ntBASIC17.24■□□□□ 0.35
SCN4AP35499 COLEC11-204ENST00000402794 1134 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
SCN4AP35499 LINC00265-2P-201ENST00000413372 782 ntBASIC17.24■□□□□ 0.35
SCN4AP35499 SOD2-205ENST00000444946 917 ntTSL 2 BASIC17.24■□□□□ 0.35
SCN4AP35499 RPS18P9-201ENST00000482817 460 ntBASIC17.24■□□□□ 0.35
SCN4AP35499 RN7SL288P-201ENST00000490496 291 ntBASIC17.24■□□□□ 0.35
SCN4AP35499 HINT1-205ENST00000508488 703 ntTSL 2 BASIC17.24■□□□□ 0.35
SCN4AP35499 PLA2G15-209ENST00000566188 1203 ntTSL 2 BASIC17.24■□□□□ 0.35
SCN4AP35499 LINC02333-201ENST00000603464 852 ntTSL 3 BASIC17.24■□□□□ 0.35
SCN4AP35499 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC17.24■□□□□ 0.35
SCN4AP35499 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SCN4AP35499 RNF167-201ENST00000262482 1915 ntAPPRIS P3 TSL 2 BASIC17.24■□□□□ 0.35
SCN4AP35499 CA12-203ENST00000422263 2556 ntTSL 2 BASIC17.24■□□□□ 0.35
SCN4AP35499 PSMG2-201ENST00000317615 1686 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SCN4AP35499 SARS2-202ENST00000430193 1886 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
SCN4AP35499 LINC00905-203ENST00000588838 1414 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
SCN4AP35499 MRM2-201ENST00000242257 1601 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SCN4AP35499 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SCN4AP35499 RPF1-201ENST00000370654 1385 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SCN4AP35499 TCL1A-203ENST00000554012 1391 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SCN4AP35499 TSPAN3-205ENST00000558745 1340 ntTSL 5 BASIC17.24■□□□□ 0.35
SCN4AP35499 FDFT1-223ENST00000615631 2462 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
SCN4AP35499 PAIP2-202ENST00000394795 2297 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SCN4AP35499 SLC38A6-201ENST00000267488 1688 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SCN4AP35499 RNLS-203ENST00000437752 525 ntTSL 2 BASIC17.24■□□□□ 0.35
SCN4AP35499 VENTXP3-201ENST00000546480 773 ntBASIC17.24■□□□□ 0.35
SCN4AP35499 NMRK2-202ENST00000593949 869 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
SCN4AP35499 NMRK2-204ENST00000599576 691 ntTSL 3 BASIC17.24■□□□□ 0.35
SCN4AP35499 ANKRD36C-208ENST00000619511 737 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
SCN4AP35499 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC17.23■□□□□ 0.35
SCN4AP35499 MLF1-201ENST00000355893 2203 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SCN4AP35499 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SCN4AP35499 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC17.23■□□□□ 0.35
SCN4AP35499 PCCB-215ENST00000482086 1436 ntTSL 3 BASIC17.23■□□□□ 0.35
SCN4AP35499 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SCN4AP35499 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 84.8 ms