Protein–RNA interactions for Protein: P35244

RPA3, Replication protein A 14 kDa subunit, humanhuman

Predicted RBP Predictions only

Length 121 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPA3P35244 NRAS-201ENST00000369535 4449 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
RPA3P35244 ARHGEF1-202ENST00000347545 3091 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
RPA3P35244 TTC28-AS1-212ENST00000433317 3080 ntTSL 5 BASIC15.31■□□□□ 0.04
RPA3P35244 AC109583.3-201ENST00000641183 3128 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
RPA3P35244 AC022144.1-201ENST00000602255 1580 ntBASIC15.31■□□□□ 0.04
RPA3P35244 OSBPL10-201ENST00000396556 6600 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
RPA3P35244 ARMC5-205ENST00000563544 3549 ntAPPRIS ALT2 TSL 2 BASIC15.31■□□□□ 0.04
RPA3P35244 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
RPA3P35244 CDK2AP1-205ENST00000542174 1812 ntTSL 2 BASIC15.31■□□□□ 0.04
RPA3P35244 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC15.31■□□□□ 0.04
RPA3P35244 EXOC6B-202ENST00000410104 5795 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
RPA3P35244 PPL-205ENST00000590782 5845 ntAPPRIS ALT1 TSL 5 BASIC15.31■□□□□ 0.04
RPA3P35244 BARHL2-201ENST00000370445 1979 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
RPA3P35244 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
RPA3P35244 LRIG3-201ENST00000320743 4070 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
RPA3P35244 DDX20-201ENST00000369702 4212 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
RPA3P35244 SC5D-202ENST00000392789 2258 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
RPA3P35244 SLC35C2-201ENST00000243896 2447 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
RPA3P35244 LAT2-205ENST00000460943 2527 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
RPA3P35244 TEAD3-202ENST00000402886 2729 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
RPA3P35244 ALDH3B1-201ENST00000342456 2786 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
RPA3P35244 MYD88-203ENST00000417037 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
RPA3P35244 ASPH-214ENST00000519234 2874 ntTSL 5 BASIC15.3■□□□□ 0.04
RPA3P35244 AC107918.4-201ENST00000641966 3141 ntBASIC15.3■□□□□ 0.04
RPA3P35244 MAP3K1-201ENST00000399503 7011 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
RPA3P35244 PTPRN-201ENST00000295718 3784 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
RPA3P35244 VPS36-207ENST00000611132 4607 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
RPA3P35244 AP3M2-201ENST00000174653 3661 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
RPA3P35244 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
RPA3P35244 NID1-201ENST00000264187 5864 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
RPA3P35244 RPUSD2-201ENST00000315616 2358 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
RPA3P35244 TCAIM-201ENST00000342649 3687 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
RPA3P35244 CSRP1-202ENST00000367306 2129 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
RPA3P35244 PHTF1-204ENST00000369604 3273 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
RPA3P35244 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
RPA3P35244 CDH16-202ENST00000394055 2821 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
RPA3P35244 POLM-203ENST00000395831 2380 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
RPA3P35244 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC15.3■□□□□ 0.04
RPA3P35244 AC074338.1-201ENST00000416825 156 ntBASIC15.3■□□□□ 0.04
RPA3P35244 HDAC9-208ENST00000417496 2524 ntTSL 2 BASIC15.3■□□□□ 0.04
RPA3P35244 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC15.3■□□□□ 0.04
RPA3P35244 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC15.3■□□□□ 0.04
RPA3P35244 MUTYH-210ENST00000450313 1929 ntTSL 5 BASIC15.3■□□□□ 0.04
RPA3P35244 PEX5-207ENST00000455147 2689 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
RPA3P35244 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC15.3■□□□□ 0.04
RPA3P35244 AC004890.2-204ENST00000481968 304 ntBASIC15.3■□□□□ 0.04
RPA3P35244 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC15.3■□□□□ 0.04
RPA3P35244 STOM-203ENST00000538954 1257 ntTSL 5 BASIC15.3■□□□□ 0.04
RPA3P35244 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC15.3■□□□□ 0.04
RPA3P35244 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC15.3■□□□□ 0.04
RPA3P35244 PLXNC1-202ENST00000545312 1813 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
RPA3P35244 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
RPA3P35244 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC15.3■□□□□ 0.04
RPA3P35244 AC044860.1-202ENST00000559481 777 ntBASIC15.3■□□□□ 0.04
RPA3P35244 AIPL1-207ENST00000574506 2074 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
RPA3P35244 UBL5-208ENST00000593087 320 ntTSL 3 BASIC15.3■□□□□ 0.04
RPA3P35244 AL359881.3-201ENST00000602640 1721 ntBASIC15.3■□□□□ 0.04
RPA3P35244 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC15.3■□□□□ 0.04
RPA3P35244 AL355385.1-201ENST00000606123 409 ntBASIC15.3■□□□□ 0.04
RPA3P35244 AC074044.1-201ENST00000609673 707 ntBASIC15.3■□□□□ 0.04
RPA3P35244 MYH6-201ENST00000356287 5871 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
RPA3P35244 AC022400.6-201ENST00000603027 5818 ntAPPRIS P5 TSL 2 BASIC15.3■□□□□ 0.04
RPA3P35244 PI4K2A-201ENST00000370631 4189 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
RPA3P35244 TRIM65-201ENST00000269383 3439 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
RPA3P35244 RUSC1-204ENST00000368352 3403 ntAPPRIS ALT2 TSL 2 BASIC15.3■□□□□ 0.04
RPA3P35244 CRMP1-205ENST00000512574 2764 ntTSL 2 BASIC15.3■□□□□ 0.04
RPA3P35244 CUL7-203ENST00000535468 5504 ntAPPRIS ALT2 TSL 2 BASIC15.3■□□□□ 0.04
RPA3P35244 RFX2-222ENST00000592546 2578 ntAPPRIS ALT1 TSL 2 BASIC15.3■□□□□ 0.04
RPA3P35244 CYTH3-201ENST00000350796 4505 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
RPA3P35244 CYTH3-202ENST00000396741 4508 ntAPPRIS ALT1 TSL 5 BASIC15.29■□□□□ 0.04
RPA3P35244 TJP2-208ENST00000535702 3984 ntAPPRIS ALT2 TSL 2 BASIC15.29■□□□□ 0.04
RPA3P35244 P2RX5-207ENST00000551178 1863 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
RPA3P35244 GLIS2-202ENST00000433375 3705 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
RPA3P35244 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC15.29■□□□□ 0.04
RPA3P35244 TK1-203ENST00000588734 1681 ntTSL 2 BASIC15.29■□□□□ 0.04
RPA3P35244 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC15.29■□□□□ 0.04
RPA3P35244 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
RPA3P35244 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
RPA3P35244 ATP11B-201ENST00000323116 7325 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
RPA3P35244 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC15.29■□□□□ 0.04
RPA3P35244 RPTOR-201ENST00000306801 6408 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
RPA3P35244 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
RPA3P35244 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
RPA3P35244 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
RPA3P35244 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC15.29■□□□□ 0.04
RPA3P35244 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC15.29■□□□□ 0.04
RPA3P35244 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC15.29■□□□□ 0.04
RPA3P35244 AC009477.1-201ENST00000452936 217 ntBASIC15.29■□□□□ 0.04
RPA3P35244 PFN2-205ENST00000461868 613 ntTSL 2 BASIC15.29■□□□□ 0.04
RPA3P35244 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC15.29■□□□□ 0.04
RPA3P35244 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC15.29■□□□□ 0.04
RPA3P35244 ZNF890P-202ENST00000530367 1156 ntBASIC15.29■□□□□ 0.04
RPA3P35244 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
RPA3P35244 NAA60-208ENST00000570819 833 ntTSL 2 BASIC15.29■□□□□ 0.04
RPA3P35244 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC15.29■□□□□ 0.04
RPA3P35244 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
RPA3P35244 AC025181.2-201ENST00000606994 802 ntBASIC15.29■□□□□ 0.04
RPA3P35244 AL645728.2-202ENST00000641679 227 ntBASIC15.29■□□□□ 0.04
RPA3P35244 ENDOV-206ENST00000518901 2549 ntTSL 2 BASIC15.29■□□□□ 0.04
RPA3P35244 KLHL25-201ENST00000337975 3758 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms