Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 API5-203ENST00000455725 2257 ntTSL 2 BASIC16.9■□□□□ 0.3
CIITAP33076 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
CIITAP33076 COX11-201ENST00000299335 2497 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CIITAP33076 LINC02212-201ENST00000515243 2130 ntTSL 2 BASIC16.9■□□□□ 0.3
CIITAP33076 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
CIITAP33076 MRPS7-201ENST00000245539 1406 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CIITAP33076 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC16.9■□□□□ 0.3
CIITAP33076 LINC01667-202ENST00000623919 1422 ntTSL 5 BASIC16.9■□□□□ 0.3
CIITAP33076 PPIL6-207ENST00000521072 4128 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CIITAP33076 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC16.9■□□□□ 0.3
CIITAP33076 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CIITAP33076 HVCN1-202ENST00000356742 2189 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CIITAP33076 PDZK1IP1-201ENST00000294338 846 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CIITAP33076 BEX5-201ENST00000333643 857 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CIITAP33076 RPF1-202ENST00000370656 724 ntTSL 2 BASIC16.9■□□□□ 0.3
CIITAP33076 AC079178.1-201ENST00000420915 656 ntBASIC16.9■□□□□ 0.3
CIITAP33076 LINC01840-201ENST00000421870 571 ntTSL 4 BASIC16.9■□□□□ 0.3
CIITAP33076 KLC4-205ENST00000458460 1251 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
CIITAP33076 CCDC153-204ENST00000503566 1295 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
CIITAP33076 MUTYH-237ENST00000531105 501 ntTSL 5 BASIC16.9■□□□□ 0.3
CIITAP33076 AL583722.2-201ENST00000557223 663 ntTSL 3 BASIC16.9■□□□□ 0.3
CIITAP33076 AP002360.2-202ENST00000572035 738 ntTSL 3 BASIC16.9■□□□□ 0.3
CIITAP33076 OCEL1-213ENST00000601529 942 ntTSL 3 BASIC16.9■□□□□ 0.3
CIITAP33076 AP000229.1-202ENST00000609365 559 ntTSL 4 BASIC16.9■□□□□ 0.3
CIITAP33076 AC244157.2-201ENST00000616239 1006 ntBASIC16.9■□□□□ 0.3
CIITAP33076 AC007292.2-201ENST00000593524 1812 ntBASIC16.9■□□□□ 0.3
CIITAP33076 TMEM230-201ENST00000202834 1472 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CIITAP33076 EGOT-201ENST00000414938 1464 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
CIITAP33076 C15orf61-201ENST00000342683 4253 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CIITAP33076 CYP4F22-201ENST00000269703 2641 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
CIITAP33076 GOLGA8R-201ENST00000327271 1896 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
CIITAP33076 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CIITAP33076 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CIITAP33076 PSMD8-209ENST00000602911 1330 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
CIITAP33076 AC013726.1-201ENST00000563747 2285 ntBASIC16.9■□□□□ 0.3
CIITAP33076 ANKRD33-202ENST00000340970 1507 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CIITAP33076 REXO1L6P-201ENST00000603433 1515 ntBASIC16.9■□□□□ 0.3
CIITAP33076 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC16.9■□□□□ 0.3
CIITAP33076 GPKOW-201ENST00000156109 1742 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CIITAP33076 ST7L-207ENST00000369669 1743 ntTSL 2 BASIC16.9■□□□□ 0.3
CIITAP33076 ALG12-201ENST00000330817 5350 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CIITAP33076 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CIITAP33076 CERK-201ENST00000216264 4450 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CIITAP33076 TRMT11-201ENST00000334379 1565 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.3
CIITAP33076 DEPDC7-201ENST00000241051 1755 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
CIITAP33076 AC058822.1-201ENST00000507166 2550 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.3
CIITAP33076 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC16.89■□□□□ 0.29
CIITAP33076 SLC26A11-203ENST00000546047 2807 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CIITAP33076 F8-201ENST00000330287 2620 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
CIITAP33076 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CIITAP33076 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CIITAP33076 DUS4L-201ENST00000265720 2220 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
CIITAP33076 RNF157-AS1-204ENST00000590137 1812 ntTSL 2 BASIC16.89■□□□□ 0.29
CIITAP33076 AC004223.3-201ENST00000593039 1638 ntAPPRIS P5 TSL 2 BASIC16.89■□□□□ 0.29
CIITAP33076 TSPOAP1-202ENST00000343736 5947 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
CIITAP33076 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CIITAP33076 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
CIITAP33076 ANKRD26P3-201ENST00000454044 2748 ntBASIC16.89■□□□□ 0.29
CIITAP33076 TLL1-204ENST00000507499 4818 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
CIITAP33076 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CIITAP33076 LAMTOR4-201ENST00000341942 605 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CIITAP33076 UBE2T-201ENST00000367274 922 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CIITAP33076 LAMA4-203ENST00000368638 1061 ntTSL 2 BASIC16.89■□□□□ 0.29
CIITAP33076 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CIITAP33076 AC010141.1-201ENST00000411585 623 ntBASIC16.89■□□□□ 0.29
CIITAP33076 ERBB3-202ENST00000411731 1027 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
CIITAP33076 RPSAP36-202ENST00000494591 1261 ntBASIC16.89■□□□□ 0.29
CIITAP33076 NAPSB-201ENST00000525179 678 ntTSL 3 BASIC16.89■□□□□ 0.29
CIITAP33076 GSTZ1-219ENST00000557639 873 ntTSL 2 BASIC16.89■□□□□ 0.29
CIITAP33076 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC16.89■□□□□ 0.29
CIITAP33076 SYNE2-228ENST00000639659 1290 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
CIITAP33076 MARCKS-201ENST00000612661 4275 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CIITAP33076 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
CIITAP33076 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC16.89■□□□□ 0.29
CIITAP33076 CD27-201ENST00000266557 1338 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CIITAP33076 ELMOD1-201ENST00000265840 2852 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
CIITAP33076 SLC25A4-201ENST00000281456 4440 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CIITAP33076 B3GLCT-201ENST00000343307 4254 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CIITAP33076 ANO10-213ENST00000451430 2019 ntTSL 2 BASIC16.89■□□□□ 0.29
CIITAP33076 FGD5P1-202ENST00000614866 2498 ntBASIC16.89■□□□□ 0.29
CIITAP33076 GUCD1-206ENST00000435822 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CIITAP33076 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
CIITAP33076 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CIITAP33076 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.29
CIITAP33076 CDC37-201ENST00000222005 1608 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CIITAP33076 CALD1-206ENST00000424922 2124 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
CIITAP33076 A1BG-AS1-204ENST00000595302 2130 ntTSL 2 BASIC16.88■□□□□ 0.29
CIITAP33076 ARVCF-201ENST00000263207 4041 ntAPPRIS P2 TSL 1 (best) BASIC16.88■□□□□ 0.29
CIITAP33076 STYXL1-201ENST00000248600 1415 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CIITAP33076 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
CIITAP33076 ZCCHC17-202ENST00000373714 1730 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CIITAP33076 CENPK-202ENST00000396679 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CIITAP33076 DCUN1D4-203ENST00000451288 4269 ntTSL 2 BASIC16.88■□□□□ 0.29
CIITAP33076 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC16.88■□□□□ 0.29
CIITAP33076 NEU2-201ENST00000233840 1143 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CIITAP33076 KLK1-201ENST00000301420 866 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CIITAP33076 CFLAR-203ENST00000341222 1283 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
CIITAP33076 APOC3-202ENST00000375345 604 ntTSL 5 BASIC16.88■□□□□ 0.29
CIITAP33076 NCR3-204ENST00000376073 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
CIITAP33076 PSTK-202ENST00000405485 1047 ntAPPRIS P2 TSL 2 BASIC16.88■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 74.3 ms