Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC11.57□□□□□ -0.56
HLA-DMBP28068 AC002472.2-201ENST00000442739 958 ntBASIC11.57□□□□□ -0.56
HLA-DMBP28068 UGT1A2P-201ENST00000454886 866 ntBASIC11.57□□□□□ -0.56
HLA-DMBP28068 LY6E-204ENST00000519546 971 ntTSL 2 BASIC11.57□□□□□ -0.56
HLA-DMBP28068 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC11.57□□□□□ -0.56
HLA-DMBP28068 RAB35-202ENST00000534951 939 ntTSL 2 BASIC11.57□□□□□ -0.56
HLA-DMBP28068 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC11.57□□□□□ -0.56
HLA-DMBP28068 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC11.57□□□□□ -0.56
HLA-DMBP28068 MPI-209ENST00000564003 1195 ntTSL 2 BASIC11.57□□□□□ -0.56
HLA-DMBP28068 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC11.57□□□□□ -0.56
HLA-DMBP28068 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC11.57□□□□□ -0.56
HLA-DMBP28068 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC11.57□□□□□ -0.56
HLA-DMBP28068 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC11.57□□□□□ -0.56
HLA-DMBP28068 AL844908.2-201ENST00000609461 460 ntBASIC11.57□□□□□ -0.56
HLA-DMBP28068 GPR39-203ENST00000622084 900 ntTSL 5 BASIC11.57□□□□□ -0.56
HLA-DMBP28068 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC11.57□□□□□ -0.56
HLA-DMBP28068 MAPK4-201ENST00000400384 4770 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
HLA-DMBP28068 SNX19-201ENST00000265909 6535 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
HLA-DMBP28068 DMTN-203ENST00000381470 2601 ntTSL 5 BASIC11.57□□□□□ -0.56
HLA-DMBP28068 AC005523.2-201ENST00000601192 3568 ntTSL 4 BASIC11.57□□□□□ -0.56
HLA-DMBP28068 TBC1D2-203ENST00000375064 3174 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
HLA-DMBP28068 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC11.57□□□□□ -0.56
HLA-DMBP28068 RIMS1-214ENST00000518273 4116 ntTSL 5 BASIC11.57□□□□□ -0.56
HLA-DMBP28068 GPANK1-205ENST00000375906 2793 ntAPPRIS P1 TSL 2 BASIC11.57□□□□□ -0.56
HLA-DMBP28068 ZSCAN32-215ENST00000618425 2788 ntTSL 2 BASIC11.57□□□□□ -0.56
HLA-DMBP28068 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
HLA-DMBP28068 ZNF587-203ENST00000423137 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC11.57□□□□□ -0.56
HLA-DMBP28068 COL6A2-201ENST00000300527 3461 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
HLA-DMBP28068 DNAJC27-201ENST00000264711 4992 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
HLA-DMBP28068 GGT1-202ENST00000400380 2540 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
HLA-DMBP28068 ARFIP1-204ENST00000429148 1599 ntTSL 2 BASIC11.57□□□□□ -0.56
HLA-DMBP28068 TCEAL4-209ENST00000472745 1571 ntAPPRIS P3 TSL 5 BASIC11.57□□□□□ -0.56
HLA-DMBP28068 PES1-204ENST00000402284 2144 ntTSL 5 BASIC11.57□□□□□ -0.56
HLA-DMBP28068 MXD1-206ENST00000540449 5580 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
HLA-DMBP28068 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
HLA-DMBP28068 PNPLA6-202ENST00000414982 4522 ntTSL 2 BASIC11.57□□□□□ -0.56
HLA-DMBP28068 AC138969.3-201ENST00000546612 1459 ntBASIC11.57□□□□□ -0.56
HLA-DMBP28068 AC138932.2-201ENST00000548268 1459 ntBASIC11.57□□□□□ -0.56
HLA-DMBP28068 AC126755.4-201ENST00000549796 1459 ntBASIC11.57□□□□□ -0.56
HLA-DMBP28068 PPRC1-203ENST00000413464 4580 ntTSL 2 BASIC11.57□□□□□ -0.56
HLA-DMBP28068 SYMPK-213ENST00000599460 5449 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
HLA-DMBP28068 HS6ST3-201ENST00000376705 7804 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
HLA-DMBP28068 AMT-204ENST00000427987 1646 ntTSL 5 BASIC11.57□□□□□ -0.56
HLA-DMBP28068 TBC1D1-201ENST00000261439 5700 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
HLA-DMBP28068 RAF1-201ENST00000251849 3300 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
HLA-DMBP28068 AC113367.3-201ENST00000508316 1912 ntBASIC11.56□□□□□ -0.56
HLA-DMBP28068 AC108134.1-201ENST00000382225 3061 ntTSL 2 BASIC11.56□□□□□ -0.56
HLA-DMBP28068 AC104581.4-201ENST00000623126 3052 ntBASIC11.56□□□□□ -0.56
HLA-DMBP28068 AC112229.3-201ENST00000603767 3202 ntAPPRIS P1 TSL 2 BASIC11.56□□□□□ -0.56
HLA-DMBP28068 NPRL3-212ENST00000620134 3203 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
HLA-DMBP28068 AC013271.1-201ENST00000640669 3202 ntAPPRIS P1 TSL 2 BASIC11.56□□□□□ -0.56
HLA-DMBP28068 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
HLA-DMBP28068 ZBED1-203ENST00000381223 4510 ntAPPRIS P1 TSL 2 BASIC11.56□□□□□ -0.56
HLA-DMBP28068 DLGAP1-213ENST00000534970 2365 ntTSL 2 BASIC11.56□□□□□ -0.56
HLA-DMBP28068 BRD1-205ENST00000457780 4997 ntTSL 5 BASIC11.56□□□□□ -0.56
HLA-DMBP28068 BCL9L-201ENST00000334801 10005 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
HLA-DMBP28068 LILRP1-201ENST00000444199 1370 ntBASIC11.56□□□□□ -0.56
HLA-DMBP28068 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC11.56□□□□□ -0.56
HLA-DMBP28068 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
HLA-DMBP28068 FAM219B-201ENST00000357635 3550 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
HLA-DMBP28068 R3HDM2P2-201ENST00000401880 2116 ntBASIC11.56□□□□□ -0.56
HLA-DMBP28068 AMOTL2-201ENST00000249883 4488 ntAPPRIS P3 TSL 1 (best) BASIC11.56□□□□□ -0.56
HLA-DMBP28068 ARAP1-203ENST00000393605 4778 ntAPPRIS ALT2 TSL 1 (best) BASIC11.56□□□□□ -0.56
HLA-DMBP28068 NUP50-201ENST00000347635 5233 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
HLA-DMBP28068 EIF4G1-201ENST00000342981 5667 ntAPPRIS ALT1 TSL 1 (best) BASIC11.56□□□□□ -0.56
HLA-DMBP28068 COL9A2-202ENST00000372748 2862 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
HLA-DMBP28068 SLC16A1-207ENST00000538576 4374 ntAPPRIS P1 TSL 2 BASIC11.56□□□□□ -0.56
HLA-DMBP28068 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
HLA-DMBP28068 TMEM230-202ENST00000342308 1562 ntTSL 2 BASIC11.56□□□□□ -0.56
HLA-DMBP28068 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC11.56□□□□□ -0.56
HLA-DMBP28068 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
HLA-DMBP28068 LRRC20-204ENST00000373224 3095 ntAPPRIS P1 TSL 2 BASIC11.56□□□□□ -0.56
HLA-DMBP28068 ZCCHC17-202ENST00000373714 1730 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
HLA-DMBP28068 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
HLA-DMBP28068 BAIAP3-202ENST00000397488 4583 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
HLA-DMBP28068 AC104457.1-201ENST00000401024 814 ntBASIC11.56□□□□□ -0.56
HLA-DMBP28068 AL035633.1-201ENST00000406139 838 ntBASIC11.56□□□□□ -0.56
HLA-DMBP28068 RAC2-204ENST00000406508 893 ntTSL 5 BASIC11.56□□□□□ -0.56
HLA-DMBP28068 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC11.56□□□□□ -0.56
HLA-DMBP28068 MED12L-203ENST00000422248 2757 ntAPPRIS ALT2 TSL 2 BASIC11.56□□□□□ -0.56
HLA-DMBP28068 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC11.56□□□□□ -0.56
HLA-DMBP28068 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC11.56□□□□□ -0.56
HLA-DMBP28068 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC11.56□□□□□ -0.56
HLA-DMBP28068 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC11.56□□□□□ -0.56
HLA-DMBP28068 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC11.56□□□□□ -0.56
HLA-DMBP28068 OARD1-208ENST00000469104 704 ntTSL 2 BASIC11.56□□□□□ -0.56
HLA-DMBP28068 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC11.56□□□□□ -0.56
HLA-DMBP28068 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC11.56□□□□□ -0.56
HLA-DMBP28068 FBXO3-203ENST00000526785 5798 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
HLA-DMBP28068 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC11.56□□□□□ -0.56
HLA-DMBP28068 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC11.56□□□□□ -0.56
HLA-DMBP28068 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC11.56□□□□□ -0.56
HLA-DMBP28068 SAMD11P1-201ENST00000571429 661 ntBASIC11.56□□□□□ -0.56
HLA-DMBP28068 RN7SL204P-201ENST00000582831 262 ntBASIC11.56□□□□□ -0.56
HLA-DMBP28068 AC007787.1-201ENST00000588095 1583 ntBASIC11.56□□□□□ -0.56
HLA-DMBP28068 GPX4-206ENST00000588919 803 ntTSL 2 BASIC11.56□□□□□ -0.56
HLA-DMBP28068 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
HLA-DMBP28068 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC11.56□□□□□ -0.56
HLA-DMBP28068 NOP2-222ENST00000617555 2017 ntTSL 5 BASIC11.56□□□□□ -0.56
HLA-DMBP28068 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC11.56□□□□□ -0.56
Retrieved 100 of 98,524 protein–RNA pairs in 51.1 ms