Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 AC107463.1-201ENST00000508605 667 ntTSL 3 BASIC18.37■□□□□ 0.53
COL5A3P25940 CHTF8-204ENST00000518041 567 ntTSL 2 BASIC18.37■□□□□ 0.53
COL5A3P25940 TMBIM4-208ENST00000542724 770 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
COL5A3P25940 USB1-205ENST00000561743 1135 ntTSL 3 BASIC18.37■□□□□ 0.53
COL5A3P25940 INCA1-203ENST00000575780 1221 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL5A3P25940 MIA-206ENST00000597784 455 ntAPPRIS P1 TSL 3 BASIC18.37■□□□□ 0.53
COL5A3P25940 RPL13A-213ENST00000621674 1098 ntTSL 5 BASIC18.37■□□□□ 0.53
COL5A3P25940 ST5-261ENST00000626808 1071 ntTSL 5 BASIC18.37■□□□□ 0.53
COL5A3P25940 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
COL5A3P25940 FMR1-215ENST00000616382 1648 ntTSL 5 BASIC18.37■□□□□ 0.53
COL5A3P25940 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL5A3P25940 LACTB2-201ENST00000276590 1508 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL5A3P25940 MS4A15-201ENST00000337911 1536 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
COL5A3P25940 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC18.37■□□□□ 0.53
COL5A3P25940 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL5A3P25940 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL5A3P25940 ARMCX1-201ENST00000372829 2141 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL5A3P25940 COLCA2-202ENST00000526216 1332 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
COL5A3P25940 SLC35B2-206ENST00000615337 2014 ntTSL 4 BASIC18.36■□□□□ 0.53
COL5A3P25940 ADI1-201ENST00000327435 2391 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL5A3P25940 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
COL5A3P25940 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL5A3P25940 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC18.36■□□□□ 0.53
COL5A3P25940 SF1-209ENST00000433274 2317 ntTSL 2 BASIC18.36■□□□□ 0.53
COL5A3P25940 IL1F10-202ENST00000393197 1366 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL5A3P25940 AC109466.1-209ENST00000486913 1618 ntTSL 2 BASIC18.36■□□□□ 0.53
COL5A3P25940 VEGFA-201ENST00000230480 993 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
COL5A3P25940 POLR2L-201ENST00000322028 892 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL5A3P25940 CSNK1G2P1-201ENST00000442675 955 ntBASIC18.36■□□□□ 0.53
COL5A3P25940 FAHD2CP-203ENST00000467292 965 ntTSL 2 BASIC18.36■□□□□ 0.53
COL5A3P25940 AC007250.1-201ENST00000608934 338 ntBASIC18.36■□□□□ 0.53
COL5A3P25940 MYOZ3-209ENST00000615557 1031 ntTSL 2 BASIC18.36■□□□□ 0.53
COL5A3P25940 AC006372.4-201ENST00000624122 1543 ntBASIC18.36■□□□□ 0.53
COL5A3P25940 FBXL7-203ENST00000510662 1758 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
COL5A3P25940 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC18.36■□□□□ 0.53
COL5A3P25940 DOC2GP-204ENST00000639052 2548 ntBASIC18.36■□□□□ 0.53
COL5A3P25940 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL5A3P25940 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL5A3P25940 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
COL5A3P25940 MAGEA8-205ENST00000542674 2084 ntAPPRIS P1 TSL 3 BASIC18.36■□□□□ 0.53
COL5A3P25940 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC18.36■□□□□ 0.53
COL5A3P25940 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL5A3P25940 HCG27-201ENST00000383331 1720 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
COL5A3P25940 LAP3P2-201ENST00000454686 1454 ntBASIC18.36■□□□□ 0.53
COL5A3P25940 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL5A3P25940 NEK2-201ENST00000366998 1865 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
COL5A3P25940 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL5A3P25940 LAIR1-209ENST00000434277 1645 ntAPPRIS ALT2 TSL 2 BASIC18.35■□□□□ 0.53
COL5A3P25940 MBD1-225ENST00000591535 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL5A3P25940 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
COL5A3P25940 BAX-201ENST00000293288 1358 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
COL5A3P25940 ZMYND15-204ENST00000573751 2409 ntTSL 2 BASIC18.35■□□□□ 0.53
COL5A3P25940 GDPGP1-201ENST00000329600 1193 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
COL5A3P25940 RGR-203ENST00000372092 868 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
COL5A3P25940 AIF1L-205ENST00000372301 671 ntTSL 2 BASIC18.35■□□□□ 0.53
COL5A3P25940 AL391839.2-201ENST00000412085 383 ntTSL 5 BASIC18.35■□□□□ 0.53
COL5A3P25940 KRT17P4-201ENST00000429445 819 ntBASIC18.35■□□□□ 0.53
COL5A3P25940 ATP1A4-205ENST00000470705 886 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
COL5A3P25940 ZSCAN2-208ENST00000485222 910 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
COL5A3P25940 AC106047.2-201ENST00000511723 743 ntBASIC18.35■□□□□ 0.53
COL5A3P25940 ZSCAN2-210ENST00000538076 1109 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
COL5A3P25940 LINC01154-201ENST00000548617 454 ntTSL 3 BASIC18.35■□□□□ 0.53
COL5A3P25940 AL132994.1-201ENST00000554098 400 ntBASIC18.35■□□□□ 0.53
COL5A3P25940 GSTZ1-210ENST00000554279 795 ntTSL 2 BASIC18.35■□□□□ 0.53
COL5A3P25940 TXNDC17-208ENST00000574838 746 ntTSL 3 BASIC18.35■□□□□ 0.53
COL5A3P25940 THY1-209ENST00000580275 578 ntTSL 3 BASIC18.35■□□□□ 0.53
COL5A3P25940 RN7SL596P-201ENST00000582123 288 ntBASIC18.35■□□□□ 0.53
COL5A3P25940 RPS5-204ENST00000598098 536 ntTSL 2 BASIC18.35■□□□□ 0.53
COL5A3P25940 AL451007.2-201ENST00000632004 563 ntBASIC18.35■□□□□ 0.53
COL5A3P25940 AC011451.3-201ENST00000634951 582 ntTSL 3 BASIC18.35■□□□□ 0.53
COL5A3P25940 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL5A3P25940 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL5A3P25940 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC18.35■□□□□ 0.53
COL5A3P25940 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
COL5A3P25940 AC237221.1-201ENST00000561575 1881 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
COL5A3P25940 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
COL5A3P25940 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL5A3P25940 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL5A3P25940 ZCCHC17-201ENST00000344147 1605 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL5A3P25940 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC18.35■□□□□ 0.53
COL5A3P25940 CD59-201ENST00000351554 1775 ntAPPRIS P2 TSL 2 BASIC18.35■□□□□ 0.53
COL5A3P25940 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
COL5A3P25940 SLC25A3-216ENST00000551917 1359 ntAPPRIS P4 TSL 2 BASIC18.35■□□□□ 0.53
COL5A3P25940 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL5A3P25940 INHBE-201ENST00000266646 2429 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL5A3P25940 FAM103A1-201ENST00000304191 1568 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL5A3P25940 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL5A3P25940 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL5A3P25940 ATG5-201ENST00000343245 3092 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL5A3P25940 MBD1-209ENST00000398495 2178 ntTSL 5 BASIC18.35■□□□□ 0.53
COL5A3P25940 TMEM216-202ENST00000398979 908 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
COL5A3P25940 CAB39L-204ENST00000409130 1411 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
COL5A3P25940 AC018814.1-201ENST00000418972 357 ntTSL 3 BASIC18.35■□□□□ 0.53
COL5A3P25940 RNF144A-AS1-203ENST00000426122 579 ntTSL 4 BASIC18.35■□□□□ 0.53
COL5A3P25940 C17orf58-202ENST00000449250 1082 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL5A3P25940 AC093826.1-201ENST00000508655 993 ntBASIC18.35■□□□□ 0.53
COL5A3P25940 ALG11-203ENST00000523764 1404 ntTSL 2 BASIC18.35■□□□□ 0.53
COL5A3P25940 TUBB3-208ENST00000555576 572 ntTSL 4 BASIC18.35■□□□□ 0.53
COL5A3P25940 AC099811.3-201ENST00000586351 425 ntTSL 3 BASIC18.35■□□□□ 0.53
COL5A3P25940 AP005131.2-201ENST00000589045 487 ntTSL 2 BASIC18.35■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 51.9 ms