Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 RPL28-203ENST00000428193 573 ntTSL 2 BASIC15.07■□□□□ 0
MSH3P20585 RPL28-204ENST00000431533 590 ntTSL 2 BASIC15.07■□□□□ 0
MSH3P20585 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC15.07■□□□□ 0
MSH3P20585 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC15.07■□□□□ 0
MSH3P20585 RHOG-204ENST00000533217 886 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
MSH3P20585 AP000808.2-201ENST00000542410 569 ntTSL 4 BASIC15.07■□□□□ 0
MSH3P20585 RPL28-207ENST00000558815 616 ntTSL 2 BASIC15.07■□□□□ 0
MSH3P20585 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC15.07■□□□□ 0
MSH3P20585 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC15.07■□□□□ 0
MSH3P20585 AC008805.2-201ENST00000590069 435 ntTSL 5 BASIC15.07■□□□□ 0
MSH3P20585 COX6B1-204ENST00000592141 660 ntAPPRIS P1 TSL 3 BASIC15.07■□□□□ 0
MSH3P20585 ZSCAN30-208ENST00000592278 731 ntTSL 4 BASIC15.07■□□□□ 0
MSH3P20585 AC008735.3-201ENST00000596646 500 ntBASIC15.07■□□□□ 0
MSH3P20585 SLC9A3-AS1-206ENST00000607005 435 ntTSL 3 BASIC15.07■□□□□ 0
MSH3P20585 SPIN2A-203ENST00000614076 966 ntTSL 3 BASIC15.07■□□□□ 0
MSH3P20585 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC15.07■□□□□ 0
MSH3P20585 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
MSH3P20585 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
MSH3P20585 FP236240.1-202ENST00000624019 601 ntTSL 3 BASIC15.07■□□□□ 0
MSH3P20585 FP236240.1-204ENST00000624932 712 ntTSL 2 BASIC15.07■□□□□ 0
MSH3P20585 ZNF212-201ENST00000335870 2810 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
MSH3P20585 ADAMTSL1-207ENST00000380566 2321 ntTSL 1 (best) BASIC15.07■□□□□ 0
MSH3P20585 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC15.07■□□□□ 0
MSH3P20585 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC15.07■□□□□ 0
MSH3P20585 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC15.07■□□□□ 0
MSH3P20585 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC15.07■□□□□ 0
MSH3P20585 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC15.07■□□□□ 0
MSH3P20585 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC15.07■□□□□ 0
MSH3P20585 AC063926.2-201ENST00000623766 1308 ntBASIC15.07■□□□□ 0
MSH3P20585 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC15.07■□□□□ 0
MSH3P20585 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC15.07■□□□□ 0
MSH3P20585 ZNF800-201ENST00000265827 4203 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
MSH3P20585 TJAP1-207ENST00000436109 2572 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
MSH3P20585 PATZ1-202ENST00000266269 3781 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
MSH3P20585 REXO1L2P-201ENST00000425429 2069 ntBASIC15.07■□□□□ 0
MSH3P20585 BCAR1-202ENST00000393420 2667 ntTSL 5 BASIC15.07■□□□□ 0
MSH3P20585 ZSCAN10-209ENST00000576985 2739 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
MSH3P20585 MAPKAP1-201ENST00000265960 3395 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
MSH3P20585 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC15.07■□□□□ 0
MSH3P20585 ATXN7-201ENST00000295900 7224 ntAPPRIS P3 TSL 1 (best) BASIC15.07■□□□□ 0
MSH3P20585 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC15.07■□□□□ 0
MSH3P20585 CAMLG-201ENST00000297156 2221 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
MSH3P20585 GDAP1L1-201ENST00000342560 2265 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
MSH3P20585 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC15.06■□□□□ 0
MSH3P20585 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
MSH3P20585 BTBD10-208ENST00000528120 1662 ntTSL 2 BASIC15.06■□□□□ 0
MSH3P20585 ANKMY1-203ENST00000373318 2449 ntTSL 1 (best) BASIC15.06■□□□□ 0
MSH3P20585 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC15.06■□□□□ 0
MSH3P20585 TBK1-201ENST00000331710 3256 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
MSH3P20585 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC15.06■□□□□ 0
MSH3P20585 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC15.06■□□□□ 0
MSH3P20585 FAM160A2-203ENST00000524416 3327 ntTSL 2 BASIC15.06■□□□□ 0
MSH3P20585 SLC35A3-221ENST00000640600 3341 ntTSL 5 BASIC15.06■□□□□ 0
MSH3P20585 DHCR7-202ENST00000407721 2601 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
MSH3P20585 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC15.06■□□□□ 0
MSH3P20585 ANKRD44-203ENST00000409153 2724 ntTSL 2 BASIC15.06■□□□□ 0
MSH3P20585 ZNF559-202ENST00000393883 5095 ntAPPRIS P3 TSL 2 BASIC15.06■□□□□ 0
MSH3P20585 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC15.06■□□□□ 0
MSH3P20585 SYMPK-213ENST00000599460 5449 ntTSL 1 (best) BASIC15.06■□□□□ 0
MSH3P20585 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC15.06■□□□□ 0
MSH3P20585 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
MSH3P20585 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
MSH3P20585 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC15.06■□□□□ 0
MSH3P20585 ACTBP8-201ENST00000403258 1108 ntBASIC15.06■□□□□ 0
MSH3P20585 TPM1-207ENST00000403994 1049 ntAPPRIS ALT1 TSL 1 (best) BASIC15.06■□□□□ 0
MSH3P20585 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC15.06■□□□□ 0
MSH3P20585 TMEM14DP-201ENST00000422205 345 ntBASIC15.06■□□□□ 0
MSH3P20585 HLA-K-203ENST00000430151 1046 ntBASIC15.06■□□□□ 0
MSH3P20585 CR769775.1-201ENST00000443347 931 ntTSL 3 BASIC15.06■□□□□ 0
MSH3P20585 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC15.06■□□□□ 0
MSH3P20585 AC022616.1-201ENST00000518688 554 ntBASIC15.06■□□□□ 0
MSH3P20585 SLC25A47P1-201ENST00000531577 414 ntBASIC15.06■□□□□ 0
MSH3P20585 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC15.06■□□□□ 0
MSH3P20585 AC126696.2-201ENST00000563687 522 ntTSL 3 BASIC15.06■□□□□ 0
MSH3P20585 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC15.06■□□□□ 0
MSH3P20585 AC073082.1-201ENST00000602369 2103 ntAPPRIS P1 TSL 5 BASIC15.06■□□□□ 0
MSH3P20585 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC15.06■□□□□ 0
MSH3P20585 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
MSH3P20585 CRHR2-208ENST00000506074 3109 ntTSL 1 (best) BASIC15.06■□□□□ 0
MSH3P20585 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC15.06■□□□□ 0
MSH3P20585 LILRP1-201ENST00000444199 1370 ntBASIC15.06■□□□□ 0
MSH3P20585 SLC25A2-201ENST00000239451 1417 ntAPPRIS P1 BASIC15.06■□□□□ 0
MSH3P20585 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
MSH3P20585 CPSF7-202ENST00000394888 3650 ntAPPRIS P4 TSL 2 BASIC15.06■□□□□ 0
MSH3P20585 ARFIP1-204ENST00000429148 1599 ntTSL 2 BASIC15.06■□□□□ 0
MSH3P20585 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC15.06■□□□□ 0
MSH3P20585 FBXL19-202ENST00000380310 3796 ntAPPRIS P2 TSL 2 BASIC15.06■□□□□ 0
MSH3P20585 OIT3-202ENST00000622652 1602 ntTSL 1 (best) BASIC15.06■□□□□ 0
MSH3P20585 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
MSH3P20585 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC15.06■□□□□ 0
MSH3P20585 ELMOD1-201ENST00000265840 2852 ntTSL 1 (best) BASIC15.06■□□□□ 0
MSH3P20585 LINC00668-205ENST00000581571 1748 ntTSL 1 (best) BASIC15.06■□□□□ 0
MSH3P20585 KRT32-201ENST00000225899 1750 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
MSH3P20585 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC15.06■□□□□ 0
MSH3P20585 PAK6-202ENST00000455577 4215 ntTSL 2 BASIC15.06■□□□□ 0
MSH3P20585 RNF11-201ENST00000242719 3084 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
MSH3P20585 LMNA-201ENST00000347559 3137 ntTSL 5 BASIC15.06■□□□□ 0
MSH3P20585 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC15.05■□□□□ 0
MSH3P20585 STAT5A-211ENST00000590949 3318 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
MSH3P20585 SLC17A5-201ENST00000355773 3455 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
Retrieved 100 of 98,524 protein–RNA pairs in 49.1 ms