Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 RN7SL23P-201ENST00000484055 275 ntBASIC15.17■□□□□ 0.02
VCANP13611 C14orf132-204ENST00000556728 774 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
VCANP13611 MIR6720-201ENST00000611664 98 ntBASIC15.17■□□□□ 0.02
VCANP13611 Metazoa_SRP.156-201ENST00000622344 262 ntBASIC15.17■□□□□ 0.02
VCANP13611 OAZ3-207ENST00000627780 850 ntTSL 5 BASIC15.17■□□□□ 0.02
VCANP13611 OAZ3-209ENST00000635322 745 ntTSL 5 BASIC15.17■□□□□ 0.02
VCANP13611 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
VCANP13611 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC15.17■□□□□ 0.02
VCANP13611 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC15.17■□□□□ 0.02
VCANP13611 HOXC12-201ENST00000243103 3335 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
VCANP13611 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC15.17■□□□□ 0.02
VCANP13611 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
VCANP13611 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC15.17■□□□□ 0.02
VCANP13611 HTR3D-201ENST00000334128 1459 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
VCANP13611 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
VCANP13611 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC15.16■□□□□ 0.02
VCANP13611 PLCB1-218ENST00000629992 3095 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
VCANP13611 TEX33-203ENST00000405091 1149 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
VCANP13611 AC112484.2-201ENST00000498297 1298 ntTSL 3 BASIC15.16■□□□□ 0.02
VCANP13611 AP003040.1-201ENST00000532044 1024 ntBASIC15.16■□□□□ 0.02
VCANP13611 MIR3188-201ENST00000583494 85 ntBASIC15.16■□□□□ 0.02
VCANP13611 HAMP-203ENST00000598398 652 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
VCANP13611 OR3A1-202ENST00000615105 966 ntBASIC15.16■□□□□ 0.02
VCANP13611 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
VCANP13611 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
VCANP13611 CHN2-201ENST00000222792 3530 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
VCANP13611 CD1E-206ENST00000368161 1689 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
VCANP13611 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC15.16■□□□□ 0.02
VCANP13611 ODF2L-204ENST00000370566 2155 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
VCANP13611 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
VCANP13611 LAMA1-209ENST00000638611 1310 ntTSL 5 BASIC15.16■□□□□ 0.02
VCANP13611 AQP6-204ENST00000615425 2245 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
VCANP13611 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC15.16■□□□□ 0.02
VCANP13611 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC15.16■□□□□ 0.02
VCANP13611 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
VCANP13611 LMNA-213ENST00000473598 2015 ntTSL 2 BASIC15.16■□□□□ 0.02
VCANP13611 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
VCANP13611 LIMS1-201ENST00000332345 1235 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
VCANP13611 RNVU1-8-201ENST00000364272 125 ntBASIC15.16■□□□□ 0.02
VCANP13611 MAPK13-202ENST00000373759 1036 ntTSL 5 BASIC15.16■□□□□ 0.02
VCANP13611 HLA-DMA-202ENST00000395303 1007 ntBASIC15.16■□□□□ 0.02
VCANP13611 CELP-201ENST00000411440 1249 ntTSL 5 BASIC15.16■□□□□ 0.02
VCANP13611 DNM1P48-201ENST00000419538 439 ntBASIC15.16■□□□□ 0.02
VCANP13611 OR2T27-202ENST00000460972 1136 ntAPPRIS P1 BASIC15.16■□□□□ 0.02
VCANP13611 B9D1-206ENST00000461069 923 ntTSL 2 BASIC15.16■□□□□ 0.02
VCANP13611 SEPHS2P1-201ENST00000511618 1162 ntBASIC15.16■□□□□ 0.02
VCANP13611 LINC01490-202ENST00000551399 1260 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
VCANP13611 AC090825.1-202ENST00000560059 665 ntTSL 3 BASIC15.16■□□□□ 0.02
VCANP13611 AC003688.2-201ENST00000576271 415 ntTSL 3 BASIC15.16■□□□□ 0.02
VCANP13611 AC010754.1-201ENST00000582300 1061 ntTSL 3 BASIC15.16■□□□□ 0.02
VCANP13611 AL513478.2-202ENST00000621949 835 ntTSL 3 BASIC15.16■□□□□ 0.02
VCANP13611 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC15.16■□□□□ 0.02
VCANP13611 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
VCANP13611 AC112504.1-201ENST00000623415 1841 ntBASIC15.16■□□□□ 0.02
VCANP13611 TMEM176B-204ENST00000447204 1430 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
VCANP13611 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
VCANP13611 CHPF2-204ENST00000495645 2709 ntTSL 2 BASIC15.16■□□□□ 0.02
VCANP13611 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC15.16■□□□□ 0.02
VCANP13611 RHD-209ENST00000568195 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
VCANP13611 RASGEF1B-202ENST00000335927 1756 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
VCANP13611 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC15.16■□□□□ 0.02
VCANP13611 HS1BP3-203ENST00000406618 1375 ntTSL 2 BASIC15.16■□□□□ 0.02
VCANP13611 COX8C-201ENST00000342144 533 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
VCANP13611 TNNT2-207ENST00000367322 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
VCANP13611 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
VCANP13611 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
VCANP13611 FTCDNL1-203ENST00000420922 772 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
VCANP13611 ACER3-205ENST00000526597 1269 ntTSL 2 BASIC15.16■□□□□ 0.02
VCANP13611 MC5R-201ENST00000324750 1319 ntAPPRIS P1 BASIC15.16■□□□□ 0.02
VCANP13611 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC15.15■□□□□ 0.02
VCANP13611 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
VCANP13611 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC15.15■□□□□ 0.02
VCANP13611 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC15.15■□□□□ 0.02
VCANP13611 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC15.15■□□□□ 0.02
VCANP13611 ECHDC2-201ENST00000358358 1126 ntTSL 2 BASIC15.15■□□□□ 0.02
VCANP13611 CSTF3-202ENST00000431742 715 ntTSL 2 BASIC15.15■□□□□ 0.02
VCANP13611 FKBP11-202ENST00000444214 630 ntTSL 2 BASIC15.15■□□□□ 0.02
VCANP13611 TMEM123-208ENST00000532161 743 ntAPPRIS ALT2 TSL 3 BASIC15.15■□□□□ 0.02
VCANP13611 SMIM24-203ENST00000587847 820 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
VCANP13611 AL357143.1-203ENST00000639750 881 ntBASIC15.15■□□□□ 0.02
VCANP13611 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
VCANP13611 PGAP2-227ENST00000496834 1530 ntTSL 2 BASIC15.15■□□□□ 0.02
VCANP13611 HSD17B6-207ENST00000555805 1722 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
VCANP13611 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
VCANP13611 AC010547.4-201ENST00000561754 1378 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
VCANP13611 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
VCANP13611 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
VCANP13611 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
VCANP13611 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC15.15■□□□□ 0.02
VCANP13611 SPTLC1P3-201ENST00000403408 259 ntBASIC15.15■□□□□ 0.02
VCANP13611 SNX3-204ENST00000426155 1072 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
VCANP13611 CITED1-209ENST00000453707 998 ntAPPRIS ALT2 TSL 3 BASIC15.15■□□□□ 0.02
VCANP13611 STK24P1-201ENST00000455035 1291 ntBASIC15.15■□□□□ 0.02
VCANP13611 MUSTN1-202ENST00000486659 622 ntTSL 2 BASIC15.15■□□□□ 0.02
VCANP13611 ANKRD26P1-203ENST00000569528 966 ntBASIC15.15■□□□□ 0.02
VCANP13611 LINC01029-204ENST00000583106 1465 ntTSL 5 BASIC15.15■□□□□ 0.02
VCANP13611 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
VCANP13611 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
VCANP13611 MSTO1-201ENST00000245564 2431 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
VCANP13611 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC15.15■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 57.5 ms