Protein–RNA interactions for Protein: P12004

PCNA, Proliferating cell nuclear antigen, humanhuman

Predictions only

Length 261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCNAP12004 PCDHGB8P-201ENST00000502926 1973 ntBASIC14.79□□□□□ -0.04
PCNAP12004 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
PCNAP12004 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC14.79□□□□□ -0.04
PCNAP12004 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
PCNAP12004 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
PCNAP12004 TDG-209ENST00000544861 1387 ntTSL 2 BASIC14.79□□□□□ -0.04
PCNAP12004 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
PCNAP12004 SAMD11P1-201ENST00000571429 661 ntBASIC14.79□□□□□ -0.04
PCNAP12004 AP001033.1-201ENST00000584509 466 ntTSL 3 BASIC14.79□□□□□ -0.04
PCNAP12004 AURKB-214ENST00000585124 1227 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
PCNAP12004 INO80C-210ENST00000590757 595 ntTSL 2 BASIC14.79□□□□□ -0.04
PCNAP12004 AC011467.4-201ENST00000594891 528 ntBASIC14.79□□□□□ -0.04
PCNAP12004 AL049840.4-201ENST00000602422 811 ntBASIC14.79□□□□□ -0.04
PCNAP12004 AL391069.4-201ENST00000609583 481 ntBASIC14.79□□□□□ -0.04
PCNAP12004 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC14.79□□□□□ -0.04
PCNAP12004 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
PCNAP12004 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC14.79□□□□□ -0.04
PCNAP12004 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC14.79□□□□□ -0.04
PCNAP12004 CIC-207ENST00000575354 5473 ntAPPRIS P2 TSL 1 (best) BASIC14.79□□□□□ -0.04
PCNAP12004 PTENP1-202ENST00000532280 3996 ntBASIC14.79□□□□□ -0.04
PCNAP12004 ZKSCAN2-201ENST00000328086 7523 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
PCNAP12004 CUEDC1-206ENST00000577830 3621 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
PCNAP12004 ARHGAP4-203ENST00000370028 3372 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
PCNAP12004 GPAT4-201ENST00000396987 6298 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
PCNAP12004 THSD4-201ENST00000261862 3133 ntTSL 5 BASIC14.79□□□□□ -0.04
PCNAP12004 FBXO42-201ENST00000375592 6202 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
PCNAP12004 ABCG1-201ENST00000343687 3037 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
PCNAP12004 C21orf58-204ENST00000397682 2941 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
PCNAP12004 SNPH-203ENST00000614659 5354 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
PCNAP12004 ATE1-203ENST00000369043 4900 ntAPPRIS ALT1 TSL 1 (best) BASIC14.78□□□□□ -0.04
PCNAP12004 AC123912.2-201ENST00000594927 2409 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
PCNAP12004 TPD52L2-202ENST00000346249 2297 ntAPPRIS ALT1 TSL 1 (best) BASIC14.78□□□□□ -0.04
PCNAP12004 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC14.78□□□□□ -0.04
PCNAP12004 MBD1-209ENST00000398495 2178 ntTSL 5 BASIC14.78□□□□□ -0.04
PCNAP12004 KDELC2-201ENST00000323468 4312 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
PCNAP12004 KDM5B-202ENST00000367264 6449 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
PCNAP12004 TBC1D3G-201ENST00000569055 2065 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
PCNAP12004 TBC1D3H-201ENST00000610350 2065 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
PCNAP12004 TBC1D3L-202ENST00000617678 2065 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
PCNAP12004 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC14.78□□□□□ -0.04
PCNAP12004 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
PCNAP12004 SLC35C2-213ENST00000543605 5740 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
PCNAP12004 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC14.78□□□□□ -0.04
PCNAP12004 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
PCNAP12004 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
PCNAP12004 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
PCNAP12004 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
PCNAP12004 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC14.78□□□□□ -0.04
PCNAP12004 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
PCNAP12004 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
PCNAP12004 GPAT3-201ENST00000264409 2625 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
PCNAP12004 CCHCR1-201ENST00000376266 2625 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
PCNAP12004 IL21R-AS1-201ENST00000563191 2615 ntTSL 2 BASIC14.78□□□□□ -0.04
PCNAP12004 DMTN-201ENST00000265800 2554 ntTSL 5 BASIC14.78□□□□□ -0.04
PCNAP12004 DMTN-207ENST00000517305 2551 ntTSL 5 BASIC14.78□□□□□ -0.04
PCNAP12004 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
PCNAP12004 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC14.78□□□□□ -0.04
PCNAP12004 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC14.78□□□□□ -0.04
PCNAP12004 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC14.78□□□□□ -0.04
PCNAP12004 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
PCNAP12004 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC14.78□□□□□ -0.04
PCNAP12004 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC14.78□□□□□ -0.04
PCNAP12004 RN7SL399P-201ENST00000471648 279 ntBASIC14.78□□□□□ -0.04
PCNAP12004 CD81-207ENST00000481687 890 ntTSL 2 BASIC14.78□□□□□ -0.04
PCNAP12004 AC004066.1-201ENST00000502488 802 ntBASIC14.78□□□□□ -0.04
PCNAP12004 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC14.78□□□□□ -0.04
PCNAP12004 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC14.78□□□□□ -0.04
PCNAP12004 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC14.78□□□□□ -0.04
PCNAP12004 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC14.78□□□□□ -0.04
PCNAP12004 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC14.78□□□□□ -0.04
PCNAP12004 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC14.78□□□□□ -0.04
PCNAP12004 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC14.78□□□□□ -0.04
PCNAP12004 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC14.78□□□□□ -0.04
PCNAP12004 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
PCNAP12004 AC009118.2-201ENST00000613275 655 ntBASIC14.78□□□□□ -0.04
PCNAP12004 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC14.78□□□□□ -0.04
PCNAP12004 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC14.78□□□□□ -0.04
PCNAP12004 ARNT2-204ENST00000527771 2458 ntAPPRIS ALT1 TSL 2 BASIC14.78□□□□□ -0.04
PCNAP12004 PTPN13-203ENST00000427191 8487 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
PCNAP12004 RAB18-207ENST00000535776 4811 ntTSL 2 BASIC14.78□□□□□ -0.04
PCNAP12004 AC140479.7-201ENST00000636301 2332 ntBASIC14.78□□□□□ -0.04
PCNAP12004 PTPRU-204ENST00000428026 5550 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
PCNAP12004 ACE3P-201ENST00000423435 1973 ntBASIC14.78□□□□□ -0.04
PCNAP12004 TIE1-201ENST00000372476 3882 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
PCNAP12004 BTN1A1-201ENST00000244513 2895 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
PCNAP12004 STAT1-203ENST00000392323 2723 ntAPPRIS ALT1 TSL 2 BASIC14.78□□□□□ -0.04
PCNAP12004 COL6A2-201ENST00000300527 3461 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
PCNAP12004 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
PCNAP12004 DDX50-206ENST00000610822 2510 ntTSL 5 BASIC14.77□□□□□ -0.04
PCNAP12004 SYP-201ENST00000263233 2498 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
PCNAP12004 RCSD1-202ENST00000367854 3135 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.04
PCNAP12004 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
PCNAP12004 AC007743.1-201ENST00000596663 3075 ntTSL 2 BASIC14.77□□□□□ -0.04
PCNAP12004 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
PCNAP12004 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
PCNAP12004 TMEM132E-203ENST00000631683 4379 ntAPPRIS P2 TSL 5 BASIC14.77□□□□□ -0.04
PCNAP12004 IL17RD-201ENST00000296318 8720 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
PCNAP12004 AC011899.2-202ENST00000438047 4302 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
PCNAP12004 ASPG-206ENST00000551177 4851 ntAPPRIS P2 TSL 1 (best) BASIC14.77□□□□□ -0.04
PCNAP12004 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 66.9 ms