Protein–RNA interactions for Protein: Q9Y4P1

ATG4B, Cysteine protease ATG4B, humanhuman

Predictions only

Length 393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4BQ9Y4P1 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
ATG4BQ9Y4P1 NOP2-222ENST00000617555 2017 ntTSL 5 BASIC14.32□□□□□ -0.12
ATG4BQ9Y4P1 GPR153-201ENST00000377893 4082 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
ATG4BQ9Y4P1 TMEM201-202ENST00000340381 3776 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
ATG4BQ9Y4P1 TBCEL-205ENST00000529397 1375 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
ATG4BQ9Y4P1 SELPLG-201ENST00000228463 1704 ntAPPRIS ALT2 TSL 2 BASIC14.32□□□□□ -0.12
ATG4BQ9Y4P1 AC018442.1-201ENST00000421439 2061 ntBASIC14.32□□□□□ -0.12
ATG4BQ9Y4P1 ZBTB17-201ENST00000375733 2770 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
ATG4BQ9Y4P1 E2F6-212ENST00000546212 3191 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
ATG4BQ9Y4P1 GPSM1-205ENST00000440944 3633 ntAPPRIS P2 TSL 5 BASIC14.32□□□□□ -0.12
ATG4BQ9Y4P1 PA2G4-201ENST00000303305 2577 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
ATG4BQ9Y4P1 RPS6KL1-201ENST00000354625 5195 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
ATG4BQ9Y4P1 VARS2-201ENST00000321897 4073 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
ATG4BQ9Y4P1 KDM3A-201ENST00000312912 4886 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
ATG4BQ9Y4P1 HGNC:18790-203ENST00000433139 2254 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
ATG4BQ9Y4P1 ITSN1-205ENST00000381291 5437 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
ATG4BQ9Y4P1 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
ATG4BQ9Y4P1 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC14.31□□□□□ -0.12
ATG4BQ9Y4P1 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
ATG4BQ9Y4P1 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
ATG4BQ9Y4P1 PWP2-201ENST00000291576 3297 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
ATG4BQ9Y4P1 DIO3OS-208ENST00000556120 2473 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
ATG4BQ9Y4P1 CAMSAP3-202ENST00000446248 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
ATG4BQ9Y4P1 DCAKD-201ENST00000310604 2122 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
ATG4BQ9Y4P1 FAM169B-201ENST00000332908 579 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
ATG4BQ9Y4P1 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
ATG4BQ9Y4P1 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC14.31□□□□□ -0.12
ATG4BQ9Y4P1 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
ATG4BQ9Y4P1 NQO2-202ENST00000380430 1098 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
ATG4BQ9Y4P1 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC14.31□□□□□ -0.12
ATG4BQ9Y4P1 AL589986.1-201ENST00000429230 789 ntTSL 5 BASIC14.31□□□□□ -0.12
ATG4BQ9Y4P1 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC14.31□□□□□ -0.12
ATG4BQ9Y4P1 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC14.31□□□□□ -0.12
ATG4BQ9Y4P1 AC068587.3-201ENST00000526613 355 ntBASIC14.31□□□□□ -0.12
ATG4BQ9Y4P1 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
ATG4BQ9Y4P1 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC14.31□□□□□ -0.12
ATG4BQ9Y4P1 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
ATG4BQ9Y4P1 AC126696.2-201ENST00000563687 522 ntTSL 3 BASIC14.31□□□□□ -0.12
ATG4BQ9Y4P1 AC132938.2-201ENST00000579188 680 ntBASIC14.31□□□□□ -0.12
ATG4BQ9Y4P1 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC14.31□□□□□ -0.12
ATG4BQ9Y4P1 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC14.31□□□□□ -0.12
ATG4BQ9Y4P1 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
ATG4BQ9Y4P1 AL591163.1-201ENST00000641757 987 ntBASIC14.31□□□□□ -0.12
ATG4BQ9Y4P1 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
ATG4BQ9Y4P1 MLST8-201ENST00000301724 1735 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
ATG4BQ9Y4P1 LINC00668-205ENST00000581571 1748 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
ATG4BQ9Y4P1 CCDC50-201ENST00000392455 8429 ntAPPRIS ALT1 TSL 1 (best) BASIC14.31□□□□□ -0.12
ATG4BQ9Y4P1 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
ATG4BQ9Y4P1 SESN1-202ENST00000356644 2676 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
ATG4BQ9Y4P1 RALGDS-202ENST00000372050 3634 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
ATG4BQ9Y4P1 AKT1S1-205ENST00000391833 3640 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
ATG4BQ9Y4P1 TGM6-201ENST00000202625 2292 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
ATG4BQ9Y4P1 AMZ1-201ENST00000312371 5516 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
ATG4BQ9Y4P1 AIFM2-204ENST00000613322 3247 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
ATG4BQ9Y4P1 GPER1-201ENST00000297469 2778 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
ATG4BQ9Y4P1 UBC-205ENST00000536769 3745 ntAPPRIS P1 BASIC14.31□□□□□ -0.12
ATG4BQ9Y4P1 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC14.31□□□□□ -0.12
ATG4BQ9Y4P1 UBE3B-201ENST00000340074 1448 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
ATG4BQ9Y4P1 MTRF1L-201ENST00000367230 3431 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
ATG4BQ9Y4P1 NTMT1-204ENST00000372486 1487 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
ATG4BQ9Y4P1 MYADML2-201ENST00000409745 2452 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
ATG4BQ9Y4P1 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
ATG4BQ9Y4P1 ZNF497-201ENST00000311044 3468 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
ATG4BQ9Y4P1 C18orf25-203ENST00000615052 5462 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
ATG4BQ9Y4P1 AGPAT1-201ENST00000336984 2021 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
ATG4BQ9Y4P1 KCNQ4-201ENST00000347132 4099 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.12
ATG4BQ9Y4P1 CSNK1A1-202ENST00000377843 2559 ntAPPRIS ALT1 TSL 1 (best) BASIC14.3□□□□□ -0.12
ATG4BQ9Y4P1 STAMBPL1-204ENST00000371927 4184 ntTSL 2 BASIC14.3□□□□□ -0.12
ATG4BQ9Y4P1 CAMKK2-203ENST00000347034 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
ATG4BQ9Y4P1 SLC52A3-205ENST00000632431 2694 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
ATG4BQ9Y4P1 TRPV4-201ENST00000261740 3233 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
ATG4BQ9Y4P1 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
ATG4BQ9Y4P1 PIK3CD-206ENST00000536656 5483 ntTSL 5 BASIC14.3□□□□□ -0.12
ATG4BQ9Y4P1 SUCO-210ENST00000616058 5495 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
ATG4BQ9Y4P1 PIK3CD-208ENST00000628140 5483 ntTSL 5 BASIC14.3□□□□□ -0.12
ATG4BQ9Y4P1 MTA1-203ENST00000406191 2770 ntAPPRIS P5 TSL 2 BASIC14.3□□□□□ -0.12
ATG4BQ9Y4P1 ALG3-207ENST00000455059 1697 ntTSL 5 BASIC14.3□□□□□ -0.12
ATG4BQ9Y4P1 OXA1L-201ENST00000285848 1719 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
ATG4BQ9Y4P1 NID1-201ENST00000264187 5864 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
ATG4BQ9Y4P1 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
ATG4BQ9Y4P1 NFATC4-204ENST00000424781 5488 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
ATG4BQ9Y4P1 TLL1-206ENST00000513213 1829 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
ATG4BQ9Y4P1 EIF4G1-216ENST00000427845 5038 ntTSL 5 BASIC14.3□□□□□ -0.12
ATG4BQ9Y4P1 CRYBG2-210ENST00000527815 2523 ntAPPRIS ALT2 TSL 2 BASIC14.3□□□□□ -0.12
ATG4BQ9Y4P1 NAT8-201ENST00000272425 947 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
ATG4BQ9Y4P1 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC14.3□□□□□ -0.12
ATG4BQ9Y4P1 AC007319.1-202ENST00000412276 829 ntTSL 5 BASIC14.3□□□□□ -0.12
ATG4BQ9Y4P1 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC14.3□□□□□ -0.12
ATG4BQ9Y4P1 AL157832.1-201ENST00000428273 495 ntTSL 2 BASIC14.3□□□□□ -0.12
ATG4BQ9Y4P1 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC14.3□□□□□ -0.12
ATG4BQ9Y4P1 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC14.3□□□□□ -0.12
ATG4BQ9Y4P1 AC007389.4-201ENST00000454674 793 ntBASIC14.3□□□□□ -0.12
ATG4BQ9Y4P1 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC14.3□□□□□ -0.12
ATG4BQ9Y4P1 NAA50-208ENST00000497255 789 ntTSL 5 BASIC14.3□□□□□ -0.12
ATG4BQ9Y4P1 CCKBR-204ENST00000531712 463 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
ATG4BQ9Y4P1 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC14.3□□□□□ -0.12
ATG4BQ9Y4P1 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC14.3□□□□□ -0.12
ATG4BQ9Y4P1 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC14.3□□□□□ -0.12
ATG4BQ9Y4P1 CAMKK2-211ENST00000538733 5175 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
ATG4BQ9Y4P1 MAGED2-201ENST00000218439 1958 ntAPPRIS P2 TSL 5 BASIC14.3□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 39.5 ms