Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 PSORS1C3-201ENST00000412143 593 ntTSL 1 (best) BASIC15.04■□□□□ -0
TRIM39Q9HCM9 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC15.04■□□□□ -0
TRIM39Q9HCM9 FDPS-203ENST00000447866 1256 ntAPPRIS ALT1 TSL 5 BASIC15.04■□□□□ -0
TRIM39Q9HCM9 DMKN-216ENST00000458071 510 ntAPPRIS ALT2 TSL 3 BASIC15.04■□□□□ -0
TRIM39Q9HCM9 AC093879.1-201ENST00000508959 1176 ntTSL 2 BASIC15.04■□□□□ -0
TRIM39Q9HCM9 IGHV3-71-201ENST00000523324 359 ntBASIC15.04■□□□□ -0
TRIM39Q9HCM9 OMP-201ENST00000529803 492 ntAPPRIS P1 BASIC15.04■□□□□ -0
TRIM39Q9HCM9 AC125603.2-201ENST00000546835 876 ntTSL 3 BASIC15.04■□□□□ -0
TRIM39Q9HCM9 AC008969.1-205ENST00000553254 876 ntTSL 2 BASIC15.04■□□□□ -0
TRIM39Q9HCM9 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC15.04■□□□□ -0
TRIM39Q9HCM9 SNHG15-207ENST00000582727 1039 ntTSL 2 BASIC15.04■□□□□ -0
TRIM39Q9HCM9 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC15.04■□□□□ -0
TRIM39Q9HCM9 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC15.04■□□□□ -0
TRIM39Q9HCM9 CDH23-201ENST00000224721 11139 ntAPPRIS P5 TSL 5 BASIC15.04■□□□□ -0
TRIM39Q9HCM9 CDH23-214ENST00000622827 11122 ntAPPRIS ALT1 TSL 5 BASIC15.04■□□□□ -0
TRIM39Q9HCM9 B4GALNT1-201ENST00000341156 3036 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
TRIM39Q9HCM9 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC15.04■□□□□ -0
TRIM39Q9HCM9 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
TRIM39Q9HCM9 RASA4-201ENST00000262940 5605 ntAPPRIS P3 TSL 1 (best) BASIC15.04■□□□□ -0
TRIM39Q9HCM9 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
TRIM39Q9HCM9 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC15.04■□□□□ -0
TRIM39Q9HCM9 CAMLG-201ENST00000297156 2221 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
TRIM39Q9HCM9 AQP6-204ENST00000615425 2245 ntAPPRIS P1 TSL 5 BASIC15.04■□□□□ -0
TRIM39Q9HCM9 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
TRIM39Q9HCM9 RPP14-202ENST00000445193 7985 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
TRIM39Q9HCM9 C9orf139-202ENST00000623196 4990 ntTSL 2 BASIC15.04■□□□□ -0
TRIM39Q9HCM9 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
TRIM39Q9HCM9 BAG4-201ENST00000287322 4453 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
TRIM39Q9HCM9 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
TRIM39Q9HCM9 DENND4C-209ENST00000602925 6831 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
TRIM39Q9HCM9 CEP70-213ENST00000489254 1811 ntAPPRIS ALT2 TSL 2 BASIC15.03■□□□□ -0
TRIM39Q9HCM9 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC15.03■□□□□ -0
TRIM39Q9HCM9 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC15.03■□□□□ -0
TRIM39Q9HCM9 CBX7-201ENST00000216133 4081 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
TRIM39Q9HCM9 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC15.03■□□□□ -0
TRIM39Q9HCM9 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC15.03■□□□□ -0
TRIM39Q9HCM9 ASPH-202ENST00000379449 1603 ntTSL 1 (best) BASIC15.03■□□□□ -0
TRIM39Q9HCM9 ZFR2-201ENST00000262961 4756 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
TRIM39Q9HCM9 FMO5-201ENST00000254090 2632 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
TRIM39Q9HCM9 PDIA3P1-201ENST00000471856 1510 ntBASIC15.03■□□□□ -0
TRIM39Q9HCM9 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC15.03■□□□□ -0
TRIM39Q9HCM9 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
TRIM39Q9HCM9 ZKSCAN2-201ENST00000328086 7523 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
TRIM39Q9HCM9 COL11A2-201ENST00000341947 6425 ntAPPRIS ALT2 TSL 5 BASIC15.03■□□□□ -0
TRIM39Q9HCM9 NTMT1-204ENST00000372486 1487 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
TRIM39Q9HCM9 SEPT7-201ENST00000350320 4350 ntAPPRIS P5 TSL 5 BASIC15.03■□□□□ -0
TRIM39Q9HCM9 AC010642.2-201ENST00000634676 2413 ntTSL 5 BASIC15.03■□□□□ -0
TRIM39Q9HCM9 PCDH17-201ENST00000377918 8232 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
TRIM39Q9HCM9 AL359258.3-201ENST00000622910 2331 ntBASIC15.03■□□□□ -0
TRIM39Q9HCM9 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
TRIM39Q9HCM9 ATP6V1F-201ENST00000249289 704 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
TRIM39Q9HCM9 ZBTB12BP-201ENST00000314232 1122 ntBASIC15.03■□□□□ -0
TRIM39Q9HCM9 OR10H1-201ENST00000334920 1124 ntAPPRIS P1 BASIC15.03■□□□□ -0
TRIM39Q9HCM9 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
TRIM39Q9HCM9 PES1-204ENST00000402284 2144 ntTSL 5 BASIC15.03■□□□□ -0
TRIM39Q9HCM9 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC15.03■□□□□ -0
TRIM39Q9HCM9 MIR1909-201ENST00000411312 80 ntBASIC15.03■□□□□ -0
TRIM39Q9HCM9 ATP5G2P4-201ENST00000442175 420 ntBASIC15.03■□□□□ -0
TRIM39Q9HCM9 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC15.03■□□□□ -0
TRIM39Q9HCM9 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC15.03■□□□□ -0
TRIM39Q9HCM9 DNAJC19-209ENST00000491873 769 ntTSL 2 BASIC15.03■□□□□ -0
TRIM39Q9HCM9 SLC45A2-204ENST00000509381 1040 ntTSL 1 (best) BASIC15.03■□□□□ -0
TRIM39Q9HCM9 CLRN2-201ENST00000511148 823 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
TRIM39Q9HCM9 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC15.03■□□□□ -0
TRIM39Q9HCM9 AC018653.3-202ENST00000538062 735 ntTSL 3 BASIC15.03■□□□□ -0
TRIM39Q9HCM9 NOP2-220ENST00000545915 630 ntTSL 2 BASIC15.03■□□□□ -0
TRIM39Q9HCM9 DUX4L47-201ENST00000566374 394 ntBASIC15.03■□□□□ -0
TRIM39Q9HCM9 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC15.03■□□□□ -0
TRIM39Q9HCM9 RIC8A-217ENST00000626818 159 ntTSL 5 BASIC15.03■□□□□ -0
TRIM39Q9HCM9 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC15.03■□□□□ -0
TRIM39Q9HCM9 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC15.03■□□□□ -0
TRIM39Q9HCM9 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
TRIM39Q9HCM9 CASR-202ENST00000498619 5009 ntTSL 1 (best) BASIC15.03■□□□□ -0
TRIM39Q9HCM9 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC15.03■□□□□ -0
TRIM39Q9HCM9 PIMREG-205ENST00000572447 1948 ntAPPRIS P3 TSL 1 (best) BASIC15.03■□□□□ -0
TRIM39Q9HCM9 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC15.03■□□□□ -0
TRIM39Q9HCM9 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC15.03■□□□□ -0
TRIM39Q9HCM9 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
TRIM39Q9HCM9 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC15.03■□□□□ -0
TRIM39Q9HCM9 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC15.03■□□□□ -0
TRIM39Q9HCM9 RAPGEF1-202ENST00000372190 6045 ntAPPRIS P4 TSL 1 (best) BASIC15.03■□□□□ -0
TRIM39Q9HCM9 CELP-203ENST00000624767 2414 ntTSL 5 BASIC15.03■□□□□ -0
TRIM39Q9HCM9 KCTD1-203ENST00000417602 1705 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
TRIM39Q9HCM9 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC15.03■□□□□ -0
TRIM39Q9HCM9 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
TRIM39Q9HCM9 POLL-206ENST00000370172 2308 ntTSL 2 BASIC15.03■□□□□ -0
TRIM39Q9HCM9 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC15.02■□□□□ -0
TRIM39Q9HCM9 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC15.02■□□□□ -0
TRIM39Q9HCM9 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC15.02■□□□□ -0
TRIM39Q9HCM9 IPPK-201ENST00000287996 4401 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
TRIM39Q9HCM9 LRRN1-201ENST00000319331 3823 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
TRIM39Q9HCM9 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC15.02■□□□□ -0
TRIM39Q9HCM9 FOS-202ENST00000535987 1402 ntTSL 2 BASIC15.02■□□□□ -0
TRIM39Q9HCM9 ATP6AP2-211ENST00000636196 1403 ntAPPRIS ALT2 TSL 5 BASIC15.02■□□□□ -0
TRIM39Q9HCM9 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC15.02■□□□□ -0
TRIM39Q9HCM9 BCL9L-201ENST00000334801 10005 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
TRIM39Q9HCM9 GALNTL6-205ENST00000511251 2905 ntTSL 1 (best) BASIC15.02■□□□□ -0
TRIM39Q9HCM9 STRN3-201ENST00000355683 3970 ntTSL 1 (best) BASIC15.02■□□□□ -0
TRIM39Q9HCM9 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC15.02■□□□□ -0
TRIM39Q9HCM9 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC15.02■□□□□ -0
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms