Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 MAPT-206ENST00000415613 2331 ntAPPRIS ALT2 TSL 5 BASIC15.61■□□□□ 0.09
PCDH9Q9HC56 SH2D3C-206ENST00000429553 2794 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
PCDH9Q9HC56 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
PCDH9Q9HC56 BTBD10-208ENST00000528120 1662 ntTSL 2 BASIC15.61■□□□□ 0.09
PCDH9Q9HC56 LINC01225-202ENST00000562339 2113 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
PCDH9Q9HC56 NUTM2D-202ENST00000412718 5543 ntAPPRIS ALT2 TSL 5 BASIC15.61■□□□□ 0.09
PCDH9Q9HC56 WARS2-202ENST00000369426 2811 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
PCDH9Q9HC56 COG8-206ENST00000306875 4247 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
PCDH9Q9HC56 AC015656.1-201ENST00000624209 3578 ntBASIC15.61■□□□□ 0.09
PCDH9Q9HC56 HTR7-202ENST00000336152 3126 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
PCDH9Q9HC56 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
PCDH9Q9HC56 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
PCDH9Q9HC56 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
PCDH9Q9HC56 HLA-K-203ENST00000430151 1046 ntBASIC15.61■□□□□ 0.09
PCDH9Q9HC56 VDAC1P7-201ENST00000462417 847 ntBASIC15.61■□□□□ 0.09
PCDH9Q9HC56 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC15.61■□□□□ 0.09
PCDH9Q9HC56 AC136601.1-201ENST00000521803 666 ntTSL 3 BASIC15.61■□□□□ 0.09
PCDH9Q9HC56 AC092552.1-201ENST00000547243 906 ntBASIC15.61■□□□□ 0.09
PCDH9Q9HC56 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC15.61■□□□□ 0.09
PCDH9Q9HC56 AC009088.3-201ENST00000563605 357 ntTSL 3 BASIC15.61■□□□□ 0.09
PCDH9Q9HC56 COX11-202ENST00000571584 1108 ntTSL 2 BASIC15.61■□□□□ 0.09
PCDH9Q9HC56 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC15.61■□□□□ 0.09
PCDH9Q9HC56 AC008494.3-201ENST00000606615 944 ntBASIC15.61■□□□□ 0.09
PCDH9Q9HC56 AGAP1-213ENST00000619456 1057 ntTSL 5 BASIC15.61■□□□□ 0.09
PCDH9Q9HC56 APAF1-201ENST00000333991 4539 ntTSL 5 BASIC15.61■□□□□ 0.09
PCDH9Q9HC56 AL591623.1-201ENST00000417786 1960 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
PCDH9Q9HC56 TRAF3-202ENST00000351691 2239 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
PCDH9Q9HC56 AC004754.1-201ENST00000600536 2242 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
PCDH9Q9HC56 PTBP1-201ENST00000349038 3155 ntAPPRIS P3 TSL 1 (best) BASIC15.61■□□□□ 0.09
PCDH9Q9HC56 CLCNKA-201ENST00000331433 2475 ntAPPRIS P3 TSL 1 (best) BASIC15.61■□□□□ 0.09
PCDH9Q9HC56 AC023632.2-201ENST00000523011 1789 ntTSL 2 BASIC15.61■□□□□ 0.09
PCDH9Q9HC56 AP004608.1-203ENST00000528482 3679 ntTSL 5 BASIC15.61■□□□□ 0.09
PCDH9Q9HC56 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
PCDH9Q9HC56 POMT1-204ENST00000402686 3038 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
PCDH9Q9HC56 DCAF17-202ENST00000375255 5828 ntAPPRIS P3 TSL 1 (best) BASIC15.61■□□□□ 0.09
PCDH9Q9HC56 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC15.61■□□□□ 0.09
PCDH9Q9HC56 PPP1R13L-202ENST00000418234 3118 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
PCDH9Q9HC56 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC15.61■□□□□ 0.09
PCDH9Q9HC56 ZC3HAV1-204ENST00000471652 3182 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
PCDH9Q9HC56 ABR-228ENST00000574437 3196 ntTSL 5 BASIC15.61■□□□□ 0.09
PCDH9Q9HC56 UBE2D1-201ENST00000373910 2659 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
PCDH9Q9HC56 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC15.6■□□□□ 0.09
PCDH9Q9HC56 BIRC5-203ENST00000374948 2446 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
PCDH9Q9HC56 LINC00163-201ENST00000434081 2155 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
PCDH9Q9HC56 ALG3-207ENST00000455059 1697 ntTSL 5 BASIC15.6■□□□□ 0.09
PCDH9Q9HC56 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC15.6■□□□□ 0.09
PCDH9Q9HC56 USP47-207ENST00000527733 4525 ntAPPRIS P3 TSL 1 (best) BASIC15.6■□□□□ 0.09
PCDH9Q9HC56 DRD5P1-201ENST00000456605 1438 ntBASIC15.6■□□□□ 0.09
PCDH9Q9HC56 FGR-203ENST00000374005 2729 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
PCDH9Q9HC56 HTR3A-206ENST00000506841 2221 ntTSL 2 BASIC15.6■□□□□ 0.09
PCDH9Q9HC56 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC15.6■□□□□ 0.09
PCDH9Q9HC56 PNPLA5-201ENST00000216177 2539 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
PCDH9Q9HC56 CYP1A1-210ENST00000617691 2521 ntTSL 5 BASIC15.6■□□□□ 0.09
PCDH9Q9HC56 DMTN-203ENST00000381470 2601 ntTSL 5 BASIC15.6■□□□□ 0.09
PCDH9Q9HC56 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
PCDH9Q9HC56 AMT-232ENST00000636199 1546 ntTSL 5 BASIC15.6■□□□□ 0.09
PCDH9Q9HC56 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
PCDH9Q9HC56 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
PCDH9Q9HC56 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
PCDH9Q9HC56 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC15.6■□□□□ 0.09
PCDH9Q9HC56 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
PCDH9Q9HC56 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC15.6■□□□□ 0.09
PCDH9Q9HC56 AL442647.2-201ENST00000429864 857 ntBASIC15.6■□□□□ 0.09
PCDH9Q9HC56 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC15.6■□□□□ 0.09
PCDH9Q9HC56 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC15.6■□□□□ 0.09
PCDH9Q9HC56 AC026410.3-201ENST00000514280 936 ntBASIC15.6■□□□□ 0.09
PCDH9Q9HC56 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC15.6■□□□□ 0.09
PCDH9Q9HC56 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC15.6■□□□□ 0.09
PCDH9Q9HC56 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC15.6■□□□□ 0.09
PCDH9Q9HC56 TP53TG3HP-202ENST00000569755 579 ntBASIC15.6■□□□□ 0.09
PCDH9Q9HC56 SPDYE22P-201ENST00000582158 798 ntBASIC15.6■□□□□ 0.09
PCDH9Q9HC56 AC124287.1-201ENST00000582249 838 ntTSL 3 BASIC15.6■□□□□ 0.09
PCDH9Q9HC56 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC15.6■□□□□ 0.09
PCDH9Q9HC56 NOP53-AS1-201ENST00000602048 540 ntTSL 4 BASIC15.6■□□□□ 0.09
PCDH9Q9HC56 TMEM261P1-201ENST00000604899 340 ntBASIC15.6■□□□□ 0.09
PCDH9Q9HC56 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC15.6■□□□□ 0.09
PCDH9Q9HC56 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC15.6■□□□□ 0.09
PCDH9Q9HC56 MSI2-202ENST00000322684 1860 ntAPPRIS ALT2 TSL 2 BASIC15.6■□□□□ 0.09
PCDH9Q9HC56 INTS11-204ENST00000421495 1868 ntTSL 2 BASIC15.6■□□□□ 0.09
PCDH9Q9HC56 PCNX3-201ENST00000355703 7105 ntAPPRIS P1 TSL 5 BASIC15.6■□□□□ 0.09
PCDH9Q9HC56 MIR600HG-201ENST00000449175 5984 ntBASIC15.6■□□□□ 0.09
PCDH9Q9HC56 SLC13A5-203ENST00000433363 3435 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
PCDH9Q9HC56 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC15.6■□□□□ 0.09
PCDH9Q9HC56 XKR7-201ENST00000562532 7844 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
PCDH9Q9HC56 GPR137C-201ENST00000321662 3888 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
PCDH9Q9HC56 HS2ST1-201ENST00000370550 6736 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
PCDH9Q9HC56 FZD4-201ENST00000531380 7383 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
PCDH9Q9HC56 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC15.6■□□□□ 0.09
PCDH9Q9HC56 TRIM67-202ENST00000444294 9320 ntAPPRIS ALT1 TSL 5 BASIC15.6■□□□□ 0.09
PCDH9Q9HC56 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC15.6■□□□□ 0.09
PCDH9Q9HC56 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC15.6■□□□□ 0.09
PCDH9Q9HC56 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC15.59■□□□□ 0.09
PCDH9Q9HC56 PPP1R16A-201ENST00000292539 2722 ntAPPRIS P1 TSL 2 BASIC15.59■□□□□ 0.09
PCDH9Q9HC56 RTEL1-201ENST00000318100 4676 ntTSL 2 BASIC15.59■□□□□ 0.09
PCDH9Q9HC56 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
PCDH9Q9HC56 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
PCDH9Q9HC56 TFE3-201ENST00000315869 3415 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
PCDH9Q9HC56 RIMS1-216ENST00000521978 5079 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
PCDH9Q9HC56 TMEM230-201ENST00000202834 1472 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
PCDH9Q9HC56 FBP1-203ENST00000415431 1487 ntAPPRIS P1 TSL 2 BASIC15.59■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 56.5 ms