Protein–RNA interactions for Protein: Q9H9A6

LRRC40, Leucine-rich repeat-containing protein 40, humanhuman

Predictions only

Length 602 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC40Q9H9A6 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
LRRC40Q9H9A6 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC15.37■□□□□ 0.05
LRRC40Q9H9A6 ABCB7-202ENST00000339447 2234 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
LRRC40Q9H9A6 PXDNL-201ENST00000356297 4805 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
LRRC40Q9H9A6 LINC00476-204ENST00000429781 2825 ntTSL 2 BASIC15.37■□□□□ 0.05
LRRC40Q9H9A6 APAF1-201ENST00000333991 4539 ntTSL 5 BASIC15.37■□□□□ 0.05
LRRC40Q9H9A6 APOLD1-201ENST00000326765 4724 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
LRRC40Q9H9A6 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC15.37■□□□□ 0.05
LRRC40Q9H9A6 AC113367.3-201ENST00000508316 1912 ntBASIC15.37■□□□□ 0.05
LRRC40Q9H9A6 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC15.37■□□□□ 0.05
LRRC40Q9H9A6 AL365209.1-201ENST00000624418 6473 ntBASIC15.37■□□□□ 0.05
LRRC40Q9H9A6 FLI1-205ENST00000527786 4127 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
LRRC40Q9H9A6 FBLN2-203ENST00000404922 4318 ntAPPRIS P4 TSL 5 BASIC15.36■□□□□ 0.05
LRRC40Q9H9A6 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC15.36■□□□□ 0.05
LRRC40Q9H9A6 IRGQ-201ENST00000422989 9685 ntAPPRIS P1 TSL 5 BASIC15.36■□□□□ 0.05
LRRC40Q9H9A6 C15orf52-206ENST00000559313 3022 ntAPPRIS P2 TSL 5 BASIC15.36■□□□□ 0.05
LRRC40Q9H9A6 ALDOA-228ENST00000627059 2402 ntAPPRIS ALT1 TSL 5 BASIC15.36■□□□□ 0.05
LRRC40Q9H9A6 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC15.36■□□□□ 0.05
LRRC40Q9H9A6 MTA3-203ENST00000406652 5484 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
LRRC40Q9H9A6 ZNF683-201ENST00000349618 1610 ntAPPRIS P3 TSL 1 (best) BASIC15.36■□□□□ 0.05
LRRC40Q9H9A6 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
LRRC40Q9H9A6 LHFPL2-207ENST00000515007 4680 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
LRRC40Q9H9A6 PAK2-201ENST00000327134 6139 ntAPPRIS P1 TSL 2 BASIC15.36■□□□□ 0.05
LRRC40Q9H9A6 TSEN2-205ENST00000444864 2697 ntTSL 2 BASIC15.36■□□□□ 0.05
LRRC40Q9H9A6 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
LRRC40Q9H9A6 SEC16A-202ENST00000290037 8982 ntAPPRIS ALT2 TSL 1 (best) BASIC15.36■□□□□ 0.05
LRRC40Q9H9A6 MFRP-201ENST00000360167 1663 ntTSL 2 BASIC15.36■□□□□ 0.05
LRRC40Q9H9A6 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC15.36■□□□□ 0.05
LRRC40Q9H9A6 OPA1-204ENST00000361828 6381 ntAPPRIS ALT1 TSL 5 BASIC15.36■□□□□ 0.05
LRRC40Q9H9A6 CALY-202ENST00000368555 783 ntTSL 2 BASIC15.36■□□□□ 0.05
LRRC40Q9H9A6 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC15.36■□□□□ 0.05
LRRC40Q9H9A6 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
LRRC40Q9H9A6 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
LRRC40Q9H9A6 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
LRRC40Q9H9A6 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
LRRC40Q9H9A6 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
LRRC40Q9H9A6 BCRP1-201ENST00000444246 691 ntBASIC15.36■□□□□ 0.05
LRRC40Q9H9A6 AC114812.1-204ENST00000449669 728 ntBASIC15.36■□□□□ 0.05
LRRC40Q9H9A6 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC15.36■□□□□ 0.05
LRRC40Q9H9A6 RPS15-202ENST00000585665 467 ntTSL 3 BASIC15.36■□□□□ 0.05
LRRC40Q9H9A6 LINC02560-201ENST00000596379 459 ntBASIC15.36■□□□□ 0.05
LRRC40Q9H9A6 NOP53-AS1-201ENST00000602048 540 ntTSL 4 BASIC15.36■□□□□ 0.05
LRRC40Q9H9A6 AL096865.1-201ENST00000606796 927 ntBASIC15.36■□□□□ 0.05
LRRC40Q9H9A6 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC15.36■□□□□ 0.05
LRRC40Q9H9A6 AC023090.2-201ENST00000625182 2110 ntBASIC15.36■□□□□ 0.05
LRRC40Q9H9A6 ADAM15-201ENST00000271836 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC15.36■□□□□ 0.05
LRRC40Q9H9A6 SLC22A15-202ENST00000369503 4720 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
LRRC40Q9H9A6 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC15.36■□□□□ 0.05
LRRC40Q9H9A6 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC15.36■□□□□ 0.05
LRRC40Q9H9A6 GLUL-202ENST00000331872 4364 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
LRRC40Q9H9A6 SCAP-206ENST00000428413 3749 ntTSL 5 BASIC15.36■□□□□ 0.05
LRRC40Q9H9A6 SLC52A3-202ENST00000381944 3060 ntTSL 2 BASIC15.36■□□□□ 0.05
LRRC40Q9H9A6 C3-201ENST00000245907 5263 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
LRRC40Q9H9A6 JARID2-201ENST00000341776 5755 ntAPPRIS P3 TSL 1 (best) BASIC15.36■□□□□ 0.05
LRRC40Q9H9A6 NBEA-201ENST00000310336 10794 ntAPPRIS ALT1 TSL 1 (best) BASIC15.36■□□□□ 0.05
LRRC40Q9H9A6 STUM-202ENST00000366789 4093 ntAPPRIS ALT1 TSL 5 BASIC15.36■□□□□ 0.05
LRRC40Q9H9A6 STK40-204ENST00000373132 3621 ntAPPRIS P3 TSL 1 (best) BASIC15.36■□□□□ 0.05
LRRC40Q9H9A6 ITFG1-201ENST00000320640 3400 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
LRRC40Q9H9A6 EXT1-201ENST00000378204 8270 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
LRRC40Q9H9A6 BTBD11-204ENST00000420571 3478 ntTSL 5 BASIC15.36■□□□□ 0.05
LRRC40Q9H9A6 EXOC6B-209ENST00000634650 2583 ntTSL 5 BASIC15.35■□□□□ 0.05
LRRC40Q9H9A6 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC15.35■□□□□ 0.05
LRRC40Q9H9A6 SLC38A5-212ENST00000619100 2100 ntTSL 2 BASIC15.35■□□□□ 0.05
LRRC40Q9H9A6 SLC38A5-214ENST00000622196 2100 ntTSL 5 BASIC15.35■□□□□ 0.05
LRRC40Q9H9A6 MCHR2-201ENST00000281806 2368 ntAPPRIS P1 TSL 2 BASIC15.35■□□□□ 0.05
LRRC40Q9H9A6 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
LRRC40Q9H9A6 MAGED4B-207ENST00000485287 2618 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
LRRC40Q9H9A6 PPIL2-212ENST00000626352 2625 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
LRRC40Q9H9A6 LMX1B-201ENST00000355497 5809 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
LRRC40Q9H9A6 ARC-201ENST00000356613 2948 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
LRRC40Q9H9A6 SDK1-210ENST00000615806 10258 ntAPPRIS ALT2 TSL 5 BASIC15.35■□□□□ 0.05
LRRC40Q9H9A6 TMEM230-201ENST00000202834 1472 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
LRRC40Q9H9A6 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
LRRC40Q9H9A6 ZNF587-203ENST00000423137 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
LRRC40Q9H9A6 MAP7D1-203ENST00000373150 3238 ntAPPRIS ALT2 TSL 2 BASIC15.35■□□□□ 0.05
LRRC40Q9H9A6 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
LRRC40Q9H9A6 RPS15-201ENST00000233609 534 ntTSL 2 BASIC15.35■□□□□ 0.05
LRRC40Q9H9A6 B9D1-201ENST00000261499 908 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
LRRC40Q9H9A6 FAM84A-201ENST00000295092 6355 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
LRRC40Q9H9A6 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
LRRC40Q9H9A6 RNU1-114P-201ENST00000365297 166 ntBASIC15.35■□□□□ 0.05
LRRC40Q9H9A6 NSL1-201ENST00000366976 722 ntTSL 2 BASIC15.35■□□□□ 0.05
LRRC40Q9H9A6 BRF1-202ENST00000379932 884 ntTSL 5 BASIC15.35■□□□□ 0.05
LRRC40Q9H9A6 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC15.35■□□□□ 0.05
LRRC40Q9H9A6 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
LRRC40Q9H9A6 B9D1-203ENST00000395615 805 ntTSL 3 BASIC15.35■□□□□ 0.05
LRRC40Q9H9A6 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC15.35■□□□□ 0.05
LRRC40Q9H9A6 GALT-202ENST00000450095 1280 ntTSL 2 BASIC15.35■□□□□ 0.05
LRRC40Q9H9A6 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC15.35■□□□□ 0.05
LRRC40Q9H9A6 AC022616.1-201ENST00000518688 554 ntBASIC15.35■□□□□ 0.05
LRRC40Q9H9A6 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC15.35■□□□□ 0.05
LRRC40Q9H9A6 SPCS2P1-201ENST00000561636 679 ntBASIC15.35■□□□□ 0.05
LRRC40Q9H9A6 DUX4L47-201ENST00000566374 394 ntBASIC15.35■□□□□ 0.05
LRRC40Q9H9A6 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC15.35■□□□□ 0.05
LRRC40Q9H9A6 RPS15-205ENST00000586686 562 ntTSL 5 BASIC15.35■□□□□ 0.05
LRRC40Q9H9A6 RPS15-208ENST00000591804 711 ntTSL 5 BASIC15.35■□□□□ 0.05
LRRC40Q9H9A6 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC15.35■□□□□ 0.05
LRRC40Q9H9A6 CHCHD2P3-201ENST00000603038 451 ntBASIC15.35■□□□□ 0.05
LRRC40Q9H9A6 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC15.35■□□□□ 0.05
LRRC40Q9H9A6 NEDD1-213ENST00000557644 2367 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 49.5 ms