Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 HIPK3-201ENST00000303296 7408 ntTSL 5 BASIC13.45□□□□□ -0.26
MMP28Q9H239 HNRNPUL1-204ENST00000392006 3555 ntAPPRIS P2 TSL 1 (best) BASIC13.45□□□□□ -0.26
MMP28Q9H239 DNAAF5-202ENST00000403952 1907 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
MMP28Q9H239 MAPKBP1-215ENST00000514566 5394 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
MMP28Q9H239 ZSWIM8-221ENST00000604729 6075 ntAPPRIS ALT1 TSL 5 BASIC13.44□□□□□ -0.26
MMP28Q9H239 DDX41-208ENST00000507955 2607 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
MMP28Q9H239 TRAPPC8-201ENST00000283351 6226 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
MMP28Q9H239 FAM155B-201ENST00000252338 4013 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
MMP28Q9H239 PHLDB2-203ENST00000412622 5996 ntTSL 5 BASIC13.44□□□□□ -0.26
MMP28Q9H239 AC004754.1-201ENST00000600536 2242 ntAPPRIS P1 TSL 5 BASIC13.44□□□□□ -0.26
MMP28Q9H239 SYDE1-201ENST00000342784 3264 ntAPPRIS P1 TSL 2 BASIC13.44□□□□□ -0.26
MMP28Q9H239 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC13.44□□□□□ -0.26
MMP28Q9H239 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
MMP28Q9H239 MFNG-202ENST00000416983 2034 ntTSL 2 BASIC13.44□□□□□ -0.26
MMP28Q9H239 AC108134.1-201ENST00000382225 3061 ntTSL 2 BASIC13.44□□□□□ -0.26
MMP28Q9H239 EGOT-201ENST00000414938 1464 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
MMP28Q9H239 CRELD1-202ENST00000383811 2696 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
MMP28Q9H239 PCTP-207ENST00000576183 2680 ntTSL 3 BASIC13.44□□□□□ -0.26
MMP28Q9H239 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
MMP28Q9H239 SYMPK-213ENST00000599460 5449 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
MMP28Q9H239 HOGA1-203ENST00000370647 1999 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
MMP28Q9H239 ITGB2-208ENST00000397857 2813 ntAPPRIS P1 TSL 5 BASIC13.44□□□□□ -0.26
MMP28Q9H239 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
MMP28Q9H239 USP44-203ENST00000537435 2499 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
MMP28Q9H239 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC13.44□□□□□ -0.26
MMP28Q9H239 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
MMP28Q9H239 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC13.44□□□□□ -0.26
MMP28Q9H239 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC13.44□□□□□ -0.26
MMP28Q9H239 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC13.44□□□□□ -0.26
MMP28Q9H239 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC13.44□□□□□ -0.26
MMP28Q9H239 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC13.44□□□□□ -0.26
MMP28Q9H239 RARRES2P8-201ENST00000566335 367 ntBASIC13.44□□□□□ -0.26
MMP28Q9H239 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC13.44□□□□□ -0.26
MMP28Q9H239 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
MMP28Q9H239 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
MMP28Q9H239 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC13.44□□□□□ -0.26
MMP28Q9H239 ATG9A-201ENST00000361242 3130 ntAPPRIS P1 TSL 2 BASIC13.44□□□□□ -0.26
MMP28Q9H239 CAMK2B-217ENST00000457475 4142 ntTSL 5 BASIC13.44□□□□□ -0.26
MMP28Q9H239 PRMT7-203ENST00000449359 2091 ntTSL 2 BASIC13.44□□□□□ -0.26
MMP28Q9H239 PTPN23-201ENST00000265562 5244 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
MMP28Q9H239 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC13.44□□□□□ -0.26
MMP28Q9H239 PSIP1-204ENST00000380738 3364 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
MMP28Q9H239 AL591122.2-201ENST00000624125 1853 ntBASIC13.44□□□□□ -0.26
MMP28Q9H239 ACSL1-201ENST00000281455 3832 ntAPPRIS P3 TSL 1 (best) BASIC13.44□□□□□ -0.26
MMP28Q9H239 CAMKV-209ENST00000477224 3314 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
MMP28Q9H239 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC13.44□□□□□ -0.26
MMP28Q9H239 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
MMP28Q9H239 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
MMP28Q9H239 ATP8B3-201ENST00000310127 5095 ntAPPRIS P3 TSL 1 (best) BASIC13.43□□□□□ -0.26
MMP28Q9H239 KRT18P28-201ENST00000453838 1332 ntBASIC13.43□□□□□ -0.26
MMP28Q9H239 USP4-203ENST00000415188 1454 ntTSL 3 BASIC13.43□□□□□ -0.26
MMP28Q9H239 EHF-210ENST00000531794 1481 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
MMP28Q9H239 G3BP2-202ENST00000359707 4883 ntAPPRIS P4 TSL 1 (best) BASIC13.43□□□□□ -0.26
MMP28Q9H239 SCFD1-203ENST00000458591 2359 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
MMP28Q9H239 PRNP-201ENST00000379440 2657 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
MMP28Q9H239 PHF24-201ENST00000242315 5718 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
MMP28Q9H239 RPS6KC1-208ENST00000614059 4188 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
MMP28Q9H239 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC13.43□□□□□ -0.26
MMP28Q9H239 MN1-201ENST00000302326 7556 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
MMP28Q9H239 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
MMP28Q9H239 TIGD1-201ENST00000408957 2625 ntAPPRIS P1 BASIC13.43□□□□□ -0.26
MMP28Q9H239 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC13.43□□□□□ -0.26
MMP28Q9H239 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC13.43□□□□□ -0.26
MMP28Q9H239 METTL21AP1-201ENST00000438852 635 ntBASIC13.43□□□□□ -0.26
MMP28Q9H239 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
MMP28Q9H239 ACTG1P14-201ENST00000446382 1122 ntBASIC13.43□□□□□ -0.26
MMP28Q9H239 CHRD-206ENST00000450923 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC13.43□□□□□ -0.26
MMP28Q9H239 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC13.43□□□□□ -0.26
MMP28Q9H239 CDK16-211ENST00000518022 2022 ntAPPRIS P1 TSL 2 BASIC13.43□□□□□ -0.26
MMP28Q9H239 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC13.43□□□□□ -0.26
MMP28Q9H239 QPRT-203ENST00000562473 579 ntTSL 3 BASIC13.43□□□□□ -0.26
MMP28Q9H239 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC13.43□□□□□ -0.26
MMP28Q9H239 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC13.43□□□□□ -0.26
MMP28Q9H239 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
MMP28Q9H239 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC13.43□□□□□ -0.26
MMP28Q9H239 AC099522.2-201ENST00000607001 744 ntBASIC13.43□□□□□ -0.26
MMP28Q9H239 C20orf181-201ENST00000623918 480 ntBASIC13.43□□□□□ -0.26
MMP28Q9H239 RIC8B-202ENST00000392837 5135 ntAPPRIS ALT2 TSL 5 BASIC13.43□□□□□ -0.26
MMP28Q9H239 FKBP9-201ENST00000242209 3462 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
MMP28Q9H239 CD276-202ENST00000318443 3469 ntAPPRIS P2 TSL 2 BASIC13.43□□□□□ -0.26
MMP28Q9H239 GPR4-201ENST00000323040 3048 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
MMP28Q9H239 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC13.43□□□□□ -0.26
MMP28Q9H239 MTF2-202ENST00000370303 1951 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
MMP28Q9H239 PAWR-201ENST00000328827 9129 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
MMP28Q9H239 COL6A1-207ENST00000612273 3251 ntAPPRIS ALT2 TSL 5 BASIC13.43□□□□□ -0.26
MMP28Q9H239 DLG4-203ENST00000399510 3975 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
MMP28Q9H239 SPG11-210ENST00000558319 6426 ntAPPRIS ALT2 TSL 5 BASIC13.43□□□□□ -0.26
MMP28Q9H239 PEX5L-211ENST00000472994 2235 ntAPPRIS ALT2 TSL 2 BASIC13.43□□□□□ -0.26
MMP28Q9H239 DLGAP1-204ENST00000400149 5203 ntTSL 5 BASIC13.43□□□□□ -0.26
MMP28Q9H239 PCDHA2-202ENST00000520672 3056 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
MMP28Q9H239 TMEM47-201ENST00000275954 4054 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
MMP28Q9H239 C7orf57-204ENST00000435376 1925 ntAPPRIS ALT2 TSL 1 (best) BASIC13.43□□□□□ -0.26
MMP28Q9H239 C7orf57-206ENST00000539619 1927 ntAPPRIS ALT2 TSL 5 BASIC13.43□□□□□ -0.26
MMP28Q9H239 GRIN1-204ENST00000371553 3751 ntAPPRIS P4 TSL 1 (best) BASIC13.43□□□□□ -0.26
MMP28Q9H239 RBBP8NL-201ENST00000252998 2793 ntAPPRIS P1 TSL 2 BASIC13.43□□□□□ -0.26
MMP28Q9H239 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC13.43□□□□□ -0.26
MMP28Q9H239 MLLT6-211ENST00000621332 7578 ntAPPRIS P2 TSL 1 (best) BASIC13.43□□□□□ -0.26
MMP28Q9H239 ERVK13-1-207ENST00000569465 3321 ntTSL 2 BASIC13.42□□□□□ -0.26
MMP28Q9H239 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC13.42□□□□□ -0.26
MMP28Q9H239 RPP14-202ENST00000445193 7985 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Retrieved 100 of 98,524 protein–RNA pairs in 37.6 ms