Protein–RNA interactions for Protein: Q96RI1

NR1H4, Bile acid receptor, humanhuman

Predicted RBP Predictions only

Length 486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NR1H4Q96RI1 UHMK1-203ENST00000538489 8446 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
NR1H4Q96RI1 DGKE-201ENST00000284061 8660 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
NR1H4Q96RI1 S100PBP-203ENST00000373476 3320 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
NR1H4Q96RI1 CACNA1G-228ENST00000514079 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
NR1H4Q96RI1 IGF2BP2-202ENST00000382199 3688 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
NR1H4Q96RI1 SLC12A6-206ENST00000558589 3866 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
NR1H4Q96RI1 ZDHHC15-201ENST00000373367 5796 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
NR1H4Q96RI1 FAM213A-205ENST00000606162 5859 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
NR1H4Q96RI1 KIF6-201ENST00000229913 1330 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
NR1H4Q96RI1 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
NR1H4Q96RI1 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
NR1H4Q96RI1 MAGED4B-201ENST00000335504 2578 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
NR1H4Q96RI1 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
NR1H4Q96RI1 MAP7-201ENST00000354570 4152 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
NR1H4Q96RI1 JUN-201ENST00000371222 3540 ntAPPRIS P1 BASIC14.28□□□□□ -0.12
NR1H4Q96RI1 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC14.28□□□□□ -0.12
NR1H4Q96RI1 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
NR1H4Q96RI1 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC14.28□□□□□ -0.12
NR1H4Q96RI1 PTCHD3P3-201ENST00000403073 906 ntBASIC14.28□□□□□ -0.12
NR1H4Q96RI1 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
NR1H4Q96RI1 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
NR1H4Q96RI1 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC14.28□□□□□ -0.12
NR1H4Q96RI1 ARHGEF33-202ENST00000409978 4484 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
NR1H4Q96RI1 LPO-203ENST00000421678 2729 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
NR1H4Q96RI1 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC14.28□□□□□ -0.12
NR1H4Q96RI1 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC14.28□□□□□ -0.12
NR1H4Q96RI1 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
NR1H4Q96RI1 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC14.28□□□□□ -0.12
NR1H4Q96RI1 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
NR1H4Q96RI1 SART3-203ENST00000546611 1184 ntBASIC14.28□□□□□ -0.12
NR1H4Q96RI1 POTEM-201ENST00000547889 1817 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
NR1H4Q96RI1 TRIM69-206ENST00000559390 2486 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
NR1H4Q96RI1 PAN3-AS1-201ENST00000563843 1351 ntBASIC14.28□□□□□ -0.12
NR1H4Q96RI1 AC002347.1-201ENST00000569543 541 ntBASIC14.28□□□□□ -0.12
NR1H4Q96RI1 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
NR1H4Q96RI1 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC14.28□□□□□ -0.12
NR1H4Q96RI1 AL589182.2-201ENST00000619332 1049 ntBASIC14.28□□□□□ -0.12
NR1H4Q96RI1 PPP2R1A-201ENST00000322088 5380 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
NR1H4Q96RI1 USP22-201ENST00000261497 5220 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
NR1H4Q96RI1 AJUBA-201ENST00000262713 4262 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
NR1H4Q96RI1 IFT57-201ENST00000264538 3203 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
NR1H4Q96RI1 MKRN1-201ENST00000255977 3151 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
NR1H4Q96RI1 PRCP-201ENST00000313010 3090 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
NR1H4Q96RI1 NLGN3-201ENST00000358741 3046 ntAPPRIS P4 TSL 5 BASIC14.28□□□□□ -0.12
NR1H4Q96RI1 AC020915.4-201ENST00000597230 2708 ntTSL 2 BASIC14.28□□□□□ -0.12
NR1H4Q96RI1 SIRT5-203ENST00000379262 2339 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
NR1H4Q96RI1 RSPO1-202ENST00000401068 2320 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
NR1H4Q96RI1 GEM-201ENST00000297596 2208 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
NR1H4Q96RI1 BAK1-203ENST00000442998 2212 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
NR1H4Q96RI1 CCT2-201ENST00000299300 2041 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
NR1H4Q96RI1 DSTN-201ENST00000246069 3617 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
NR1H4Q96RI1 VWA8-201ENST00000281496 3475 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
NR1H4Q96RI1 PLTP-201ENST00000354050 1731 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
NR1H4Q96RI1 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
NR1H4Q96RI1 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC14.27□□□□□ -0.12
NR1H4Q96RI1 SPATS2-223ENST00000553127 3320 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
NR1H4Q96RI1 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
NR1H4Q96RI1 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC14.27□□□□□ -0.12
NR1H4Q96RI1 LRSAM1-201ENST00000300417 3146 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
NR1H4Q96RI1 MKL1-202ENST00000396617 4505 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
NR1H4Q96RI1 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC14.27□□□□□ -0.12
NR1H4Q96RI1 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC14.27□□□□□ -0.12
NR1H4Q96RI1 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC14.27□□□□□ -0.12
NR1H4Q96RI1 AC012508.2-201ENST00000567613 1472 ntBASIC14.27□□□□□ -0.12
NR1H4Q96RI1 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC14.27□□□□□ -0.12
NR1H4Q96RI1 AC020910.6-201ENST00000623084 1459 ntBASIC14.27□□□□□ -0.12
NR1H4Q96RI1 NDRG2-251ENST00000556147 2880 ntAPPRIS P4 TSL 5 BASIC14.27□□□□□ -0.12
NR1H4Q96RI1 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
NR1H4Q96RI1 ZNF274-210ENST00000610905 2559 ntAPPRIS P4 TSL 5 BASIC14.27□□□□□ -0.13
NR1H4Q96RI1 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
NR1H4Q96RI1 PMS2P4-201ENST00000412466 1052 ntBASIC14.27□□□□□ -0.13
NR1H4Q96RI1 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC14.27□□□□□ -0.13
NR1H4Q96RI1 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.13
NR1H4Q96RI1 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC14.27□□□□□ -0.13
NR1H4Q96RI1 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
NR1H4Q96RI1 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
NR1H4Q96RI1 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC14.27□□□□□ -0.13
NR1H4Q96RI1 PRR29-207ENST00000580752 458 ntTSL 3 BASIC14.27□□□□□ -0.13
NR1H4Q96RI1 SDCCAG3P1-201ENST00000589292 1150 ntBASIC14.27□□□□□ -0.13
NR1H4Q96RI1 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
NR1H4Q96RI1 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
NR1H4Q96RI1 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC14.27□□□□□ -0.13
NR1H4Q96RI1 AL355877.3-201ENST00000622820 899 ntBASIC14.27□□□□□ -0.13
NR1H4Q96RI1 PER3-208ENST00000613533 6318 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.13
NR1H4Q96RI1 SLCO2B1-203ENST00000428359 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
NR1H4Q96RI1 NLRP7-207ENST00000590030 3209 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
NR1H4Q96RI1 USP49-201ENST00000373006 3177 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
NR1H4Q96RI1 GAPVD1-205ENST00000394084 3190 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
NR1H4Q96RI1 GFAP-201ENST00000253408 3135 ntTSL 5 BASIC14.27□□□□□ -0.13
NR1H4Q96RI1 AC007603.1-201ENST00000563124 2085 ntTSL 2 BASIC14.27□□□□□ -0.13
NR1H4Q96RI1 MCC-201ENST00000302475 8257 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
NR1H4Q96RI1 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.13
NR1H4Q96RI1 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC14.27□□□□□ -0.13
NR1H4Q96RI1 CTBP1-AS-201ENST00000625256 3886 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
NR1H4Q96RI1 NECAP2-202ENST00000443980 1929 ntTSL 2 BASIC14.27□□□□□ -0.13
NR1H4Q96RI1 TMUB2-211ENST00000589184 1837 ntTSL 5 BASIC14.27□□□□□ -0.13
NR1H4Q96RI1 SLC38A4-201ENST00000266579 2728 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
NR1H4Q96RI1 ESS2-201ENST00000252137 5392 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
NR1H4Q96RI1 HSD17B4-201ENST00000256216 2683 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
NR1H4Q96RI1 CPNE5-202ENST00000393189 2542 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 58 ms