Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
VMP1Q96GC9 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC14.57□□□□□ -0.08
VMP1Q96GC9 RCSD1-202ENST00000367854 3135 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
VMP1Q96GC9 TK1-203ENST00000588734 1681 ntTSL 2 BASIC14.57□□□□□ -0.08
VMP1Q96GC9 WDR25-204ENST00000554175 2055 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
VMP1Q96GC9 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
VMP1Q96GC9 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
VMP1Q96GC9 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC14.57□□□□□ -0.08
VMP1Q96GC9 TRPM1-203ENST00000542188 6004 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
VMP1Q96GC9 PRDM15-201ENST00000269844 4881 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
VMP1Q96GC9 C3-201ENST00000245907 5263 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
VMP1Q96GC9 GOPC-201ENST00000052569 4590 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
VMP1Q96GC9 FAM47E-STBD1-204ENST00000515604 3029 ntAPPRIS P2 TSL 2 BASIC14.57□□□□□ -0.08
VMP1Q96GC9 ERLIN2-205ENST00000518586 2623 ntTSL 2 BASIC14.57□□□□□ -0.08
VMP1Q96GC9 TMTC1-207ENST00000552618 3915 ntTSL 5 BASIC14.57□□□□□ -0.08
VMP1Q96GC9 HSD17B4-206ENST00000504811 2740 ntTSL 2 BASIC14.57□□□□□ -0.08
VMP1Q96GC9 GABPA-202ENST00000400075 4814 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
VMP1Q96GC9 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
VMP1Q96GC9 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC14.56□□□□□ -0.08
VMP1Q96GC9 VAPA-202ENST00000400000 6815 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
VMP1Q96GC9 ATP2B3-201ENST00000263519 6420 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
VMP1Q96GC9 GRM7-203ENST00000389336 2901 ntAPPRIS ALT1 TSL 1 (best) BASIC14.56□□□□□ -0.08
VMP1Q96GC9 TCHH-202ENST00000614923 6995 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
VMP1Q96GC9 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
VMP1Q96GC9 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC14.56□□□□□ -0.08
VMP1Q96GC9 TP73-205ENST00000378285 2117 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
VMP1Q96GC9 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC14.56□□□□□ -0.08
VMP1Q96GC9 SEMA5B-201ENST00000195173 4523 ntAPPRIS ALT2 TSL 5 BASIC14.56□□□□□ -0.08
VMP1Q96GC9 GAP43-201ENST00000305124 1691 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
VMP1Q96GC9 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
VMP1Q96GC9 AQP6-204ENST00000615425 2245 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
VMP1Q96GC9 CA12-202ENST00000344366 2744 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
VMP1Q96GC9 SACM1L-201ENST00000389061 3723 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
VMP1Q96GC9 ANK1-205ENST00000347528 8237 ntAPPRIS P4 TSL 1 (best) BASIC14.56□□□□□ -0.08
VMP1Q96GC9 ANK1-202ENST00000289734 8297 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
VMP1Q96GC9 DCUN1D4-203ENST00000451288 4269 ntTSL 2 BASIC14.56□□□□□ -0.08
VMP1Q96GC9 GPANK1-205ENST00000375906 2793 ntAPPRIS P1 TSL 2 BASIC14.56□□□□□ -0.08
VMP1Q96GC9 BUB1B-PAK6-201ENST00000441369 2767 ntAPPRIS P1 TSL 2 BASIC14.56□□□□□ -0.08
VMP1Q96GC9 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC14.56□□□□□ -0.08
VMP1Q96GC9 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
VMP1Q96GC9 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
VMP1Q96GC9 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC14.56□□□□□ -0.08
VMP1Q96GC9 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
VMP1Q96GC9 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC14.56□□□□□ -0.08
VMP1Q96GC9 METTL26-204ENST00000397665 558 ntTSL 2 BASIC14.56□□□□□ -0.08
VMP1Q96GC9 DGCR5-201ENST00000399539 862 ntBASIC14.56□□□□□ -0.08
VMP1Q96GC9 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC14.56□□□□□ -0.08
VMP1Q96GC9 TGFA-205ENST00000444975 985 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
VMP1Q96GC9 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC14.56□□□□□ -0.08
VMP1Q96GC9 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC14.56□□□□□ -0.08
VMP1Q96GC9 IFITM2-204ENST00000533141 588 ntAPPRIS ALT2 TSL 4 BASIC14.56□□□□□ -0.08
VMP1Q96GC9 AL596325.1-201ENST00000563991 1082 ntBASIC14.56□□□□□ -0.08
VMP1Q96GC9 WASH4P-201ENST00000564273 1246 ntBASIC14.56□□□□□ -0.08
VMP1Q96GC9 TMEM261P1-201ENST00000604899 340 ntBASIC14.56□□□□□ -0.08
VMP1Q96GC9 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC14.56□□□□□ -0.08
VMP1Q96GC9 BCL10-201ENST00000370580 2819 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
VMP1Q96GC9 CUX1-214ENST00000550008 4350 ntAPPRIS ALT2 TSL 5 BASIC14.56□□□□□ -0.08
VMP1Q96GC9 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC14.56□□□□□ -0.08
VMP1Q96GC9 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
VMP1Q96GC9 SLC30A5-209ENST00000621204 3999 ntTSL 5 BASIC14.56□□□□□ -0.08
VMP1Q96GC9 NRBF2-201ENST00000277746 1853 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
VMP1Q96GC9 PAK1-210ENST00000528203 1878 ntTSL 2 BASIC14.56□□□□□ -0.08
VMP1Q96GC9 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC14.56□□□□□ -0.08
VMP1Q96GC9 AC009133.1-201ENST00000569981 2449 ntTSL 2 BASIC14.56□□□□□ -0.08
VMP1Q96GC9 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC14.56□□□□□ -0.08
VMP1Q96GC9 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC14.56□□□□□ -0.08
VMP1Q96GC9 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
VMP1Q96GC9 RNF222-202ENST00000399398 3062 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
VMP1Q96GC9 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
VMP1Q96GC9 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
VMP1Q96GC9 E2F6-202ENST00000381525 3218 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
VMP1Q96GC9 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC14.56□□□□□ -0.08
VMP1Q96GC9 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
VMP1Q96GC9 CDH23-202ENST00000299366 3954 ntTSL 5 BASIC14.56□□□□□ -0.08
VMP1Q96GC9 FER1L4-213ENST00000621044 2778 ntTSL 2 BASIC14.56□□□□□ -0.08
VMP1Q96GC9 CCT3-201ENST00000295688 2150 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
VMP1Q96GC9 PPFIBP1-216ENST00000545334 2805 ntTSL 2 BASIC14.56□□□□□ -0.08
VMP1Q96GC9 ADAM15-202ENST00000355956 2877 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
VMP1Q96GC9 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
VMP1Q96GC9 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC14.55□□□□□ -0.08
VMP1Q96GC9 MPLKIP-201ENST00000306984 7668 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
VMP1Q96GC9 NOX5-203ENST00000448182 2498 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
VMP1Q96GC9 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC14.55□□□□□ -0.08
VMP1Q96GC9 CAMKK2-202ENST00000337174 5304 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
VMP1Q96GC9 SCLY-202ENST00000409736 1774 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
VMP1Q96GC9 KCND3-201ENST00000302127 2659 ntAPPRIS ALT1 TSL 5 BASIC14.55□□□□□ -0.08
VMP1Q96GC9 PDXK-210ENST00000468090 7297 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
VMP1Q96GC9 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC14.55□□□□□ -0.08
VMP1Q96GC9 AC090616.6-203ENST00000579186 1945 ntBASIC14.55□□□□□ -0.08
VMP1Q96GC9 JPH4-201ENST00000356300 4278 ntAPPRIS P2 TSL 1 (best) BASIC14.55□□□□□ -0.08
VMP1Q96GC9 SLC39A1-204ENST00000368623 2723 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
VMP1Q96GC9 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC14.55□□□□□ -0.08
VMP1Q96GC9 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
VMP1Q96GC9 GRAP-202ENST00000395635 834 ntTSL 2 BASIC14.55□□□□□ -0.08
VMP1Q96GC9 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC14.55□□□□□ -0.08
VMP1Q96GC9 PNKD-204ENST00000436005 978 ntTSL 5 BASIC14.55□□□□□ -0.08
VMP1Q96GC9 RPL13AP25-201ENST00000484130 612 ntBASIC14.55□□□□□ -0.08
VMP1Q96GC9 ELK1P1-201ENST00000485699 580 ntBASIC14.55□□□□□ -0.08
VMP1Q96GC9 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC14.55□□□□□ -0.08
VMP1Q96GC9 SLC8B1-206ENST00000549069 1058 ntTSL 2 BASIC14.55□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 59 ms