Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 TNN-203ENST00000622870 3719 ntTSL 5 BASIC14.2□□□□□ -0.14
DEPDC4Q8N2C3 TIE1-201ENST00000372476 3882 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
DEPDC4Q8N2C3 GAD2-203ENST00000376261 5858 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
DEPDC4Q8N2C3 ABCG2-201ENST00000237612 4479 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
DEPDC4Q8N2C3 LHX6-207ENST00000541397 2942 ntTSL 2 BASIC14.2□□□□□ -0.14
DEPDC4Q8N2C3 SFXN3-201ENST00000224807 3089 ntTSL 5 BASIC14.2□□□□□ -0.14
DEPDC4Q8N2C3 ARHGAP4-203ENST00000370028 3372 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
DEPDC4Q8N2C3 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
DEPDC4Q8N2C3 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
DEPDC4Q8N2C3 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC14.2□□□□□ -0.14
DEPDC4Q8N2C3 SLC7A8-212ENST00000529705 1819 ntTSL 2 BASIC14.2□□□□□ -0.14
DEPDC4Q8N2C3 COL4A3-202ENST00000396578 8097 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
DEPDC4Q8N2C3 BBS2-201ENST00000245157 2963 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
DEPDC4Q8N2C3 TMBIM4-202ENST00000358230 2952 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
DEPDC4Q8N2C3 PRR34-201ENST00000396008 2817 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
DEPDC4Q8N2C3 CICP11-201ENST00000434745 2827 ntBASIC14.19□□□□□ -0.14
DEPDC4Q8N2C3 ADCY7-208ENST00000566433 2535 ntTSL 5 BASIC14.19□□□□□ -0.14
DEPDC4Q8N2C3 PRMT7-202ENST00000441236 2204 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
DEPDC4Q8N2C3 HTR3A-206ENST00000506841 2221 ntTSL 2 BASIC14.19□□□□□ -0.14
DEPDC4Q8N2C3 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
DEPDC4Q8N2C3 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC14.19□□□□□ -0.14
DEPDC4Q8N2C3 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
DEPDC4Q8N2C3 EHF-210ENST00000531794 1481 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
DEPDC4Q8N2C3 TMCC3-201ENST00000261226 5877 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
DEPDC4Q8N2C3 MRC2-202ENST00000446119 3201 ntTSL 2 BASIC14.19□□□□□ -0.14
DEPDC4Q8N2C3 IL17RD-208ENST00000640796 2345 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
DEPDC4Q8N2C3 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC14.19□□□□□ -0.14
DEPDC4Q8N2C3 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
DEPDC4Q8N2C3 AC243964.3-201ENST00000623022 2028 ntBASIC14.19□□□□□ -0.14
DEPDC4Q8N2C3 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
DEPDC4Q8N2C3 NUP54-217ENST00000514987 1563 ntTSL 2 BASIC14.19□□□□□ -0.14
DEPDC4Q8N2C3 CFLAR-206ENST00000395148 4415 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
DEPDC4Q8N2C3 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC14.19□□□□□ -0.14
DEPDC4Q8N2C3 ZC3H4-201ENST00000253048 6119 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
DEPDC4Q8N2C3 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC14.19□□□□□ -0.14
DEPDC4Q8N2C3 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
DEPDC4Q8N2C3 GHSR-202ENST00000427970 912 ntBASIC14.19□□□□□ -0.14
DEPDC4Q8N2C3 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC14.19□□□□□ -0.14
DEPDC4Q8N2C3 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC14.19□□□□□ -0.14
DEPDC4Q8N2C3 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
DEPDC4Q8N2C3 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
DEPDC4Q8N2C3 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
DEPDC4Q8N2C3 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC14.19□□□□□ -0.14
DEPDC4Q8N2C3 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
DEPDC4Q8N2C3 COQ9-214ENST00000567933 882 ntTSL 3 BASIC14.19□□□□□ -0.14
DEPDC4Q8N2C3 MIR4453-201ENST00000584019 89 ntBASIC14.19□□□□□ -0.14
DEPDC4Q8N2C3 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC14.19□□□□□ -0.14
DEPDC4Q8N2C3 AL096865.1-201ENST00000606796 927 ntBASIC14.19□□□□□ -0.14
DEPDC4Q8N2C3 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC14.19□□□□□ -0.14
DEPDC4Q8N2C3 WSCD1-202ENST00000539421 2665 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
DEPDC4Q8N2C3 MFRP-201ENST00000360167 1663 ntTSL 2 BASIC14.19□□□□□ -0.14
DEPDC4Q8N2C3 PCM1-201ENST00000325083 6820 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
DEPDC4Q8N2C3 SPOCK3-210ENST00000506886 2947 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
DEPDC4Q8N2C3 SPOCK3-218ENST00000511531 2908 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
DEPDC4Q8N2C3 PI4K2A-201ENST00000370631 4189 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
DEPDC4Q8N2C3 FSTL4-201ENST00000265342 5419 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
DEPDC4Q8N2C3 C1R-201ENST00000535233 2211 ntTSL 2 BASIC14.19□□□□□ -0.14
DEPDC4Q8N2C3 ITGAM-202ENST00000544665 4718 ntAPPRIS ALT1 TSL 1 (best) BASIC14.19□□□□□ -0.14
DEPDC4Q8N2C3 E2F7-202ENST00000416496 5297 ntTSL 5 BASIC14.19□□□□□ -0.14
DEPDC4Q8N2C3 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC14.19□□□□□ -0.14
DEPDC4Q8N2C3 OR2V1-205ENST00000642036 2609 ntAPPRIS P1 BASIC14.19□□□□□ -0.14
DEPDC4Q8N2C3 AC005324.3-201ENST00000455584 5514 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
DEPDC4Q8N2C3 AL035456.1-201ENST00000456064 1369 ntBASIC14.19□□□□□ -0.14
DEPDC4Q8N2C3 AP001627.1-201ENST00000437426 1754 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
DEPDC4Q8N2C3 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC14.19□□□□□ -0.14
DEPDC4Q8N2C3 EP400NL-206ENST00000446190 3697 ntTSL 2 BASIC14.19□□□□□ -0.14
DEPDC4Q8N2C3 TRMT1-201ENST00000221504 2179 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
DEPDC4Q8N2C3 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
DEPDC4Q8N2C3 NTN4-201ENST00000343702 3615 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
DEPDC4Q8N2C3 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC14.18□□□□□ -0.14
DEPDC4Q8N2C3 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC14.18□□□□□ -0.14
DEPDC4Q8N2C3 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
DEPDC4Q8N2C3 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC14.18□□□□□ -0.14
DEPDC4Q8N2C3 HIST1H2AG-201ENST00000359193 2250 ntAPPRIS P1 BASIC14.18□□□□□ -0.14
DEPDC4Q8N2C3 BCL11B-201ENST00000345514 7603 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
DEPDC4Q8N2C3 NTRK3-AS1-201ENST00000569588 2663 ntTSL 2 BASIC14.18□□□□□ -0.14
DEPDC4Q8N2C3 CYP1A1-210ENST00000617691 2521 ntTSL 5 BASIC14.18□□□□□ -0.14
DEPDC4Q8N2C3 AL359881.3-201ENST00000602640 1721 ntBASIC14.18□□□□□ -0.14
DEPDC4Q8N2C3 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
DEPDC4Q8N2C3 ARAP3-201ENST00000239440 5250 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
DEPDC4Q8N2C3 AL591623.1-201ENST00000417786 1960 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
DEPDC4Q8N2C3 SEPT6-204ENST00000360156 2609 ntAPPRIS ALT1 TSL 1 (best) BASIC14.18□□□□□ -0.14
DEPDC4Q8N2C3 IMPDH1-201ENST00000338791 2881 ntTSL 2 BASIC14.18□□□□□ -0.14
DEPDC4Q8N2C3 IMPDH1-217ENST00000626419 2862 ntAPPRIS ALT1 TSL 5 BASIC14.18□□□□□ -0.14
DEPDC4Q8N2C3 RPS6KA4-202ENST00000528057 3121 ntAPPRIS ALT1 TSL 1 (best) BASIC14.18□□□□□ -0.14
DEPDC4Q8N2C3 STAT1-203ENST00000392323 2723 ntAPPRIS ALT1 TSL 2 BASIC14.18□□□□□ -0.14
DEPDC4Q8N2C3 ACAN-209ENST00000617301 8669 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
DEPDC4Q8N2C3 NFATC4-219ENST00000555167 4364 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
DEPDC4Q8N2C3 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
DEPDC4Q8N2C3 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
DEPDC4Q8N2C3 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
DEPDC4Q8N2C3 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
DEPDC4Q8N2C3 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
DEPDC4Q8N2C3 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
DEPDC4Q8N2C3 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC14.18□□□□□ -0.14
DEPDC4Q8N2C3 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC14.18□□□□□ -0.14
DEPDC4Q8N2C3 AC244107.1-201ENST00000442033 332 ntBASIC14.18□□□□□ -0.14
DEPDC4Q8N2C3 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC14.18□□□□□ -0.14
DEPDC4Q8N2C3 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC14.18□□□□□ -0.14
DEPDC4Q8N2C3 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 76.2 ms