Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 TSKU-203ENST00000527881 3554 ntAPPRIS P1 TSL 2 BASIC9.34□□□□□ -0.91
LINC00643Q86TS7 NPHS1-202ENST00000378910 4276 ntAPPRIS P1 TSL 1 (best) BASIC9.34□□□□□ -0.91
LINC00643Q86TS7 RAB27A-201ENST00000336787 3446 ntAPPRIS P1 TSL 1 (best) BASIC9.34□□□□□ -0.91
LINC00643Q86TS7 NFATC2-207ENST00000610033 2740 ntAPPRIS ALT2 TSL 1 (best) BASIC9.34□□□□□ -0.91
LINC00643Q86TS7 NRG1-201ENST00000287842 2035 ntAPPRIS P4 TSL 1 (best) BASIC9.34□□□□□ -0.91
LINC00643Q86TS7 ABI2-202ENST00000261017 6484 ntAPPRIS P1 TSL 1 (best) BASIC9.34□□□□□ -0.91
LINC00643Q86TS7 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC9.34□□□□□ -0.91
LINC00643Q86TS7 SAP18-201ENST00000382533 2298 ntAPPRIS P2 TSL 1 (best) BASIC9.34□□□□□ -0.91
LINC00643Q86TS7 JAM3-201ENST00000299106 3912 ntAPPRIS P1 TSL 1 (best) BASIC9.34□□□□□ -0.91
LINC00643Q86TS7 APOBR-201ENST00000431282 3765 ntAPPRIS ALT2 TSL 5 BASIC9.34□□□□□ -0.91
LINC00643Q86TS7 ARHGEF1-203ENST00000354532 3243 ntAPPRIS ALT2 TSL 1 (best) BASIC9.34□□□□□ -0.91
LINC00643Q86TS7 SHROOM3-201ENST00000296043 11020 ntAPPRIS P1 TSL 1 (best) BASIC9.34□□□□□ -0.91
LINC00643Q86TS7 AC009474.1-201ENST00000455096 1565 ntBASIC9.34□□□□□ -0.91
LINC00643Q86TS7 SIRPA-204ENST00000622179 4570 ntAPPRIS ALT1 TSL 5 BASIC9.34□□□□□ -0.91
LINC00643Q86TS7 PTGR2-205ENST00000555661 3851 ntAPPRIS P1 TSL 1 (best) BASIC9.34□□□□□ -0.91
LINC00643Q86TS7 CDC6-201ENST00000209728 4810 ntAPPRIS P1 TSL 1 (best) BASIC9.34□□□□□ -0.91
LINC00643Q86TS7 CHST15-201ENST00000346248 4810 ntAPPRIS P1 TSL 1 (best) BASIC9.34□□□□□ -0.91
LINC00643Q86TS7 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC9.34□□□□□ -0.91
LINC00643Q86TS7 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC9.34□□□□□ -0.91
LINC00643Q86TS7 AL391244.1-206ENST00000447725 1843 ntTSL 5 BASIC9.34□□□□□ -0.91
LINC00643Q86TS7 PEX5L-208ENST00000467460 9082 ntAPPRIS P3 TSL 1 (best) BASIC9.34□□□□□ -0.91
LINC00643Q86TS7 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC9.34□□□□□ -0.91
LINC00643Q86TS7 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC9.34□□□□□ -0.91
LINC00643Q86TS7 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC9.34□□□□□ -0.91
LINC00643Q86TS7 FAM220CP-201ENST00000395253 831 ntBASIC9.34□□□□□ -0.91
LINC00643Q86TS7 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC9.34□□□□□ -0.91
LINC00643Q86TS7 AL355802.2-201ENST00000402069 882 ntBASIC9.34□□□□□ -0.91
LINC00643Q86TS7 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC9.34□□□□□ -0.91
LINC00643Q86TS7 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC9.34□□□□□ -0.91
LINC00643Q86TS7 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC9.34□□□□□ -0.91
LINC00643Q86TS7 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC9.34□□□□□ -0.91
LINC00643Q86TS7 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC9.34□□□□□ -0.91
LINC00643Q86TS7 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC9.34□□□□□ -0.91
LINC00643Q86TS7 LINC01428-201ENST00000449581 874 ntTSL 1 (best) BASIC9.34□□□□□ -0.91
LINC00643Q86TS7 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC9.34□□□□□ -0.91
LINC00643Q86TS7 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC9.34□□□□□ -0.91
LINC00643Q86TS7 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC9.34□□□□□ -0.91
LINC00643Q86TS7 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC9.34□□□□□ -0.91
LINC00643Q86TS7 RNF121-214ENST00000533380 870 ntTSL 3 BASIC9.34□□□□□ -0.91
LINC00643Q86TS7 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC9.34□□□□□ -0.91
LINC00643Q86TS7 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC9.34□□□□□ -0.91
LINC00643Q86TS7 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC9.34□□□□□ -0.91
LINC00643Q86TS7 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC9.34□□□□□ -0.91
LINC00643Q86TS7 TEN1-204ENST00000588202 862 ntTSL 3 BASIC9.34□□□□□ -0.91
LINC00643Q86TS7 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC9.34□□□□□ -0.91
LINC00643Q86TS7 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC9.34□□□□□ -0.91
LINC00643Q86TS7 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC9.34□□□□□ -0.91
LINC00643Q86TS7 AL353801.3-201ENST00000609898 542 ntBASIC9.34□□□□□ -0.91
LINC00643Q86TS7 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC9.34□□□□□ -0.91
LINC00643Q86TS7 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC9.34□□□□□ -0.91
LINC00643Q86TS7 AP001350.2-201ENST00000625104 1094 ntBASIC9.34□□□□□ -0.91
LINC00643Q86TS7 MARS-234ENST00000630571 216 ntTSL 5 BASIC9.34□□□□□ -0.91
LINC00643Q86TS7 MARS-235ENST00000630803 183 ntTSL 3 BASIC9.34□□□□□ -0.91
LINC00643Q86TS7 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC9.34□□□□□ -0.91
LINC00643Q86TS7 AL355102.3-201ENST00000554299 1678 ntBASIC9.34□□□□□ -0.91
LINC00643Q86TS7 SLC35E2-202ENST00000355439 2078 ntAPPRIS ALT2 TSL 1 (best) BASIC9.34□□□□□ -0.91
LINC00643Q86TS7 AGGF1P1-201ENST00000509500 2073 ntBASIC9.34□□□□□ -0.91
LINC00643Q86TS7 BDH1-203ENST00000392379 3546 ntAPPRIS P1 TSL 5 BASIC9.34□□□□□ -0.91
LINC00643Q86TS7 VMP1-201ENST00000262291 2712 ntAPPRIS P1 TSL 1 (best) BASIC9.34□□□□□ -0.91
LINC00643Q86TS7 SYTL4-201ENST00000263033 2335 ntAPPRIS P1 TSL 2 BASIC9.34□□□□□ -0.91
LINC00643Q86TS7 MTMR11-201ENST00000369140 2324 ntAPPRIS ALT2 TSL 2 BASIC9.34□□□□□ -0.91
LINC00643Q86TS7 HSP90AA1-201ENST00000216281 3379 ntAPPRIS P1 TSL 1 (best) BASIC9.34□□□□□ -0.91
LINC00643Q86TS7 AC010969.2-201ENST00000602458 3231 ntBASIC9.34□□□□□ -0.91
LINC00643Q86TS7 ABCC3-201ENST00000285238 5716 ntAPPRIS P1 TSL 1 (best) BASIC9.34□□□□□ -0.91
LINC00643Q86TS7 RNF219-AS1-209ENST00000606429 2418 ntTSL 2 BASIC9.34□□□□□ -0.91
LINC00643Q86TS7 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC9.34□□□□□ -0.91
LINC00643Q86TS7 DDX5-210ENST00000578804 2021 ntTSL 1 (best) BASIC9.34□□□□□ -0.91
LINC00643Q86TS7 NOP2-222ENST00000617555 2017 ntTSL 5 BASIC9.34□□□□□ -0.91
LINC00643Q86TS7 AC090643.2-201ENST00000623442 2029 ntBASIC9.34□□□□□ -0.91
LINC00643Q86TS7 TMOD1-201ENST00000259365 3343 ntAPPRIS P1 TSL 1 (best) BASIC9.34□□□□□ -0.91
LINC00643Q86TS7 C4orf33-201ENST00000281146 6170 ntAPPRIS P1 TSL 1 (best) BASIC9.34□□□□□ -0.91
LINC00643Q86TS7 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC9.34□□□□□ -0.91
LINC00643Q86TS7 LAP3-210ENST00000606142 1876 ntTSL 1 (best) BASIC9.34□□□□□ -0.91
LINC00643Q86TS7 ALDH1L1-202ENST00000393431 2797 ntTSL 1 (best) BASIC9.34□□□□□ -0.91
LINC00643Q86TS7 CCDC187-204ENST00000624277 3918 ntAPPRIS ALT2 TSL 5 BASIC9.34□□□□□ -0.91
LINC00643Q86TS7 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC9.34□□□□□ -0.91
LINC00643Q86TS7 DNM3-202ENST00000367731 7613 ntAPPRIS P3 TSL 1 (best) BASIC9.34□□□□□ -0.91
LINC00643Q86TS7 IP6K3-201ENST00000293756 2610 ntAPPRIS P1 TSL 1 (best) BASIC9.34□□□□□ -0.91
LINC00643Q86TS7 APOBR-202ENST00000564831 3792 ntAPPRIS P2 TSL 1 (best) BASIC9.34□□□□□ -0.92
LINC00643Q86TS7 ERBB2-201ENST00000269571 4545 ntAPPRIS P1 TSL 1 (best) BASIC9.33□□□□□ -0.92
LINC00643Q86TS7 ELN-204ENST00000357036 3361 ntAPPRIS ALT2 TSL 1 (best) BASIC9.33□□□□□ -0.92
LINC00643Q86TS7 ZKSCAN3-203ENST00000377255 4799 ntAPPRIS P1 TSL 1 (best) BASIC9.33□□□□□ -0.92
LINC00643Q86TS7 AGPAT1-203ENST00000375107 2234 ntAPPRIS P1 TSL 1 (best) BASIC9.33□□□□□ -0.92
LINC00643Q86TS7 USP20-201ENST00000315480 4458 ntAPPRIS P1 TSL 1 (best) BASIC9.33□□□□□ -0.92
LINC00643Q86TS7 ALDH8A1-204ENST00000367847 1587 ntTSL 2 BASIC9.33□□□□□ -0.92
LINC00643Q86TS7 SMIM21-202ENST00000579022 1834 ntAPPRIS P3 TSL 1 (best) BASIC9.33□□□□□ -0.92
LINC00643Q86TS7 TMPRSS4-213ENST00000522824 2052 ntAPPRIS ALT2 TSL 1 (best) BASIC9.33□□□□□ -0.92
LINC00643Q86TS7 G2E3-202ENST00000438909 2334 ntTSL 2 BASIC9.33□□□□□ -0.92
LINC00643Q86TS7 ACO2-202ENST00000396512 2811 ntTSL 5 BASIC9.33□□□□□ -0.92
LINC00643Q86TS7 VAT1L-201ENST00000302536 3825 ntAPPRIS P1 TSL 1 (best) BASIC9.33□□□□□ -0.92
LINC00643Q86TS7 CLIC4-201ENST00000374379 4346 ntAPPRIS P1 TSL 1 (best) BASIC9.33□□□□□ -0.92
LINC00643Q86TS7 TBC1D22A-203ENST00000380995 3934 ntTSL 1 (best) BASIC9.33□□□□□ -0.92
LINC00643Q86TS7 PRPSAP1-206ENST00000446526 3660 ntAPPRIS P1 TSL 1 (best) BASIC9.33□□□□□ -0.92
LINC00643Q86TS7 CDK5RAP1-203ENST00000357886 2164 ntTSL 5 BASIC9.33□□□□□ -0.92
LINC00643Q86TS7 PM20D1-201ENST00000367136 2152 ntAPPRIS P1 TSL 1 (best) BASIC9.33□□□□□ -0.92
LINC00643Q86TS7 NSUN4-204ENST00000474844 2150 ntAPPRIS P1 TSL 1 (best) BASIC9.33□□□□□ -0.92
LINC00643Q86TS7 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC9.33□□□□□ -0.92
LINC00643Q86TS7 GHET1-201ENST00000627071 1906 ntBASIC9.33□□□□□ -0.92
LINC00643Q86TS7 POLL-202ENST00000339310 2289 ntTSL 1 (best) BASIC9.33□□□□□ -0.92
LINC00643Q86TS7 ZMYND15-206ENST00000592813 2274 ntTSL 1 (best) BASIC9.33□□□□□ -0.92
Retrieved 100 of 98,524 protein–RNA pairs in 48.8 ms