Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 MIR4313-201ENST00000580760 101 ntBASIC17.55■□□□□ 0.4
CCDC144BQ3MJ40 AC145423.3-201ENST00000615987 467 ntBASIC17.55■□□□□ 0.4
CCDC144BQ3MJ40 CR381653.1-201ENST00000622961 812 ntTSL 3 BASIC17.55■□□□□ 0.4
CCDC144BQ3MJ40 AC244517.4-201ENST00000624549 580 ntTSL 4 BASIC17.55■□□□□ 0.4
CCDC144BQ3MJ40 PPP1R12A-AS1-201ENST00000552885 3234 ntTSL 3 BASIC17.55■□□□□ 0.4
CCDC144BQ3MJ40 KAT5-202ENST00000352980 2059 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC144BQ3MJ40 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC144BQ3MJ40 RTL6-201ENST00000341255 5495 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC144BQ3MJ40 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC17.55■□□□□ 0.4
CCDC144BQ3MJ40 NFS1-203ENST00000374092 3012 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC144BQ3MJ40 HARS2-202ENST00000448069 1426 ntTSL 2 BASIC17.55■□□□□ 0.4
CCDC144BQ3MJ40 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC144BQ3MJ40 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC144BQ3MJ40 BCKDHA-201ENST00000269980 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC144BQ3MJ40 GJD2-201ENST00000290374 2889 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC144BQ3MJ40 CRCP-201ENST00000338592 1393 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC144BQ3MJ40 EYA4-205ENST00000430974 2364 ntTSL 2 BASIC17.54■□□□□ 0.4
CCDC144BQ3MJ40 ZNF713-202ENST00000429591 4339 ntAPPRIS P2 TSL 5 BASIC17.54■□□□□ 0.4
CCDC144BQ3MJ40 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC144BQ3MJ40 KCNQ4-201ENST00000347132 4099 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC144BQ3MJ40 ARHGEF26-AS1-204ENST00000491862 2598 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC144BQ3MJ40 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC144BQ3MJ40 FGD2-201ENST00000274963 3046 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC144BQ3MJ40 HTR7-203ENST00000371719 3033 ntAPPRIS ALT1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC144BQ3MJ40 AC148477.4-201ENST00000613430 1793 ntBASIC17.54■□□□□ 0.4
CCDC144BQ3MJ40 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC17.54■□□□□ 0.4
CCDC144BQ3MJ40 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC17.54■□□□□ 0.4
CCDC144BQ3MJ40 AKT1S1-205ENST00000391833 3640 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
CCDC144BQ3MJ40 KLK1-201ENST00000301420 866 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC144BQ3MJ40 MIR326-201ENST00000362220 95 ntBASIC17.54■□□□□ 0.4
CCDC144BQ3MJ40 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC144BQ3MJ40 DYNC1I1-203ENST00000413338 958 ntTSL 2 BASIC17.54■□□□□ 0.4
CCDC144BQ3MJ40 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC17.54■□□□□ 0.4
CCDC144BQ3MJ40 KRT18P25-201ENST00000508931 1278 ntBASIC17.54■□□□□ 0.4
CCDC144BQ3MJ40 GTF2H2C-215ENST00000514162 610 ntTSL 5 BASIC17.54■□□□□ 0.4
CCDC144BQ3MJ40 AC091891.1-201ENST00000560688 688 ntTSL 3 BASIC17.54■□□□□ 0.4
CCDC144BQ3MJ40 IGHV3OR16-16-201ENST00000563644 343 ntBASIC17.54■□□□□ 0.4
CCDC144BQ3MJ40 CRISPLD2-210ENST00000569090 808 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC144BQ3MJ40 PLA2G4C-AS1-201ENST00000596552 568 ntTSL 3 BASIC17.54■□□□□ 0.4
CCDC144BQ3MJ40 AL118558.3-201ENST00000607414 1079 ntBASIC17.54■□□□□ 0.4
CCDC144BQ3MJ40 HTT-AS1_1.1-201ENST00000612914 230 ntBASIC17.54■□□□□ 0.4
CCDC144BQ3MJ40 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC17.54■□□□□ 0.4
CCDC144BQ3MJ40 SLC52A3-202ENST00000381944 3060 ntTSL 2 BASIC17.54■□□□□ 0.4
CCDC144BQ3MJ40 KLF4-201ENST00000374672 2813 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC144BQ3MJ40 ADARB1-202ENST00000360697 6604 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC144BQ3MJ40 GLUL-202ENST00000331872 4364 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC144BQ3MJ40 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC144BQ3MJ40 PML-208ENST00000436891 3010 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
CCDC144BQ3MJ40 AL138799.1-201ENST00000448213 1675 ntBASIC17.54■□□□□ 0.4
CCDC144BQ3MJ40 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC17.54■□□□□ 0.4
CCDC144BQ3MJ40 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC17.54■□□□□ 0.4
CCDC144BQ3MJ40 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC144BQ3MJ40 CNNM2-203ENST00000433628 3857 ntAPPRIS ALT1 TSL 2 BASIC17.54■□□□□ 0.4
CCDC144BQ3MJ40 REC8-209ENST00000611366 2331 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC144BQ3MJ40 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC17.54■□□□□ 0.4
CCDC144BQ3MJ40 RCC2-202ENST00000375436 4087 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC144BQ3MJ40 MTA1-202ENST00000405646 2709 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
CCDC144BQ3MJ40 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
CCDC144BQ3MJ40 OPCML-IT1-201ENST00000533859 2936 ntTSL 2 BASIC17.54■□□□□ 0.4
CCDC144BQ3MJ40 ESRP2-202ENST00000473183 3793 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC144BQ3MJ40 RCSD1-202ENST00000367854 3135 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC144BQ3MJ40 IRAK1-203ENST00000369980 3666 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC144BQ3MJ40 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC17.53■□□□□ 0.4
CCDC144BQ3MJ40 GPR137C-201ENST00000321662 3888 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC144BQ3MJ40 RNF145-212ENST00000611185 3624 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
CCDC144BQ3MJ40 FGD5-AS1-202ENST00000424349 3792 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC144BQ3MJ40 UBE3B-212ENST00000540230 1541 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC144BQ3MJ40 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC144BQ3MJ40 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC144BQ3MJ40 ZNF219-203ENST00000451119 2918 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
CCDC144BQ3MJ40 GAS2L2-203ENST00000618498 2655 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC144BQ3MJ40 CNPY1-203ENST00000636372 2259 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
CCDC144BQ3MJ40 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC144BQ3MJ40 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC17.53■□□□□ 0.4
CCDC144BQ3MJ40 ASTN2-206ENST00000361477 4001 ntTSL 5 BASIC17.53■□□□□ 0.4
CCDC144BQ3MJ40 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC144BQ3MJ40 NPPC-201ENST00000295440 500 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC144BQ3MJ40 CDK2-202ENST00000354056 1260 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC144BQ3MJ40 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC17.53■□□□□ 0.4
CCDC144BQ3MJ40 AC128709.2-201ENST00000438408 558 ntTSL 4 BASIC17.53■□□□□ 0.4
CCDC144BQ3MJ40 AL049698.1-202ENST00000441716 757 ntTSL 5 BASIC17.53■□□□□ 0.4
CCDC144BQ3MJ40 COPS9-205ENST00000607357 418 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC144BQ3MJ40 AC138951.2-201ENST00000623455 1161 ntBASIC17.53■□□□□ 0.4
CCDC144BQ3MJ40 AL139099.5-201ENST00000635274 300 ntBASIC17.53■□□□□ 0.4
CCDC144BQ3MJ40 AC068587.10-201ENST00000641210 219 ntBASIC17.53■□□□□ 0.4
CCDC144BQ3MJ40 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC17.53■□□□□ 0.4
CCDC144BQ3MJ40 GPAT3-201ENST00000264409 2625 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC144BQ3MJ40 RPH3AL-202ENST00000331302 2606 ntAPPRIS P2 TSL 2 BASIC17.53■□□□□ 0.4
CCDC144BQ3MJ40 ZNF365-207ENST00000410046 3379 ntTSL 2 BASIC17.53■□□□□ 0.4
CCDC144BQ3MJ40 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC144BQ3MJ40 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC144BQ3MJ40 ADAMTS1-201ENST00000284984 5191 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC144BQ3MJ40 TTC39A-208ENST00000413473 2718 ntAPPRIS P4 TSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC144BQ3MJ40 PAPOLA-223ENST00000557320 3264 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC144BQ3MJ40 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC144BQ3MJ40 GAD2-201ENST00000259271 2462 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC144BQ3MJ40 LPAR5-201ENST00000329858 3171 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CCDC144BQ3MJ40 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
CCDC144BQ3MJ40 NXF1-213ENST00000532297 2795 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.4
CCDC144BQ3MJ40 ZDHHC3-201ENST00000296127 3101 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms