Protein–RNA interactions for Protein: Q07654

TFF3, Trefoil factor 3, humanhuman

Predictions only

Length 80 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TFF3Q07654 AC008132.1-202ENST00000342005 1389 ntBASIC13.26□□□□□ -0.29
TFF3Q07654 SPOCK2-202ENST00000373109 5445 ntAPPRIS P2 TSL 1 (best) BASIC13.26□□□□□ -0.29
TFF3Q07654 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
TFF3Q07654 MIR33B-201ENST00000385104 96 ntBASIC13.26□□□□□ -0.29
TFF3Q07654 IGHV3-21-201ENST00000390607 430 ntAPPRIS P1 BASIC13.26□□□□□ -0.29
TFF3Q07654 PFDN6-204ENST00000395131 884 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
TFF3Q07654 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC13.26□□□□□ -0.29
TFF3Q07654 IP6K2-205ENST00000413298 792 ntTSL 3 BASIC13.26□□□□□ -0.29
TFF3Q07654 CLUHP2-201ENST00000426660 1303 ntBASIC13.26□□□□□ -0.29
TFF3Q07654 C9orf116-205ENST00000429260 678 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
TFF3Q07654 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC13.26□□□□□ -0.29
TFF3Q07654 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
TFF3Q07654 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC13.26□□□□□ -0.29
TFF3Q07654 MAGEA5-201ENST00000446757 942 ntBASIC13.26□□□□□ -0.29
TFF3Q07654 AURKC-203ENST00000448930 1318 ntAPPRIS ALT2 TSL 5 BASIC13.26□□□□□ -0.29
TFF3Q07654 DNAJC27-AS1-207ENST00000451291 488 ntTSL 3 BASIC13.26□□□□□ -0.29
TFF3Q07654 OARD1-204ENST00000464633 717 ntTSL 2 BASIC13.26□□□□□ -0.29
TFF3Q07654 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
TFF3Q07654 AC005586.1-201ENST00000488310 577 ntTSL 4 BASIC13.26□□□□□ -0.29
TFF3Q07654 SUPT4H1P2-201ENST00000501248 353 ntBASIC13.26□□□□□ -0.29
TFF3Q07654 LINC02447-202ENST00000501888 2146 ntBASIC13.26□□□□□ -0.29
TFF3Q07654 NME2-204ENST00000503064 749 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
TFF3Q07654 MESTP3-201ENST00000503460 968 ntBASIC13.26□□□□□ -0.29
TFF3Q07654 FTLP10-202ENST00000505798 471 ntBASIC13.26□□□□□ -0.29
TFF3Q07654 ZNF419-208ENST00000518999 746 ntTSL 3 BASIC13.26□□□□□ -0.29
TFF3Q07654 AC024681.1-201ENST00000521917 487 ntBASIC13.26□□□□□ -0.29
TFF3Q07654 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
TFF3Q07654 AC134698.3-201ENST00000523880 214 ntBASIC13.26□□□□□ -0.29
TFF3Q07654 AC113192.2-201ENST00000525320 308 ntTSL 3 BASIC13.26□□□□□ -0.29
TFF3Q07654 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
TFF3Q07654 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
TFF3Q07654 TMEM91-211ENST00000544232 725 ntTSL 3 BASIC13.26□□□□□ -0.29
TFF3Q07654 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC13.26□□□□□ -0.29
TFF3Q07654 AP007216.2-201ENST00000562094 299 ntTSL 3 BASIC13.26□□□□□ -0.29
TFF3Q07654 FGFR3P5-201ENST00000564496 886 ntBASIC13.26□□□□□ -0.29
TFF3Q07654 DUX4L47-201ENST00000566374 394 ntBASIC13.26□□□□□ -0.29
TFF3Q07654 AP005117.1-202ENST00000581724 1908 ntBASIC13.26□□□□□ -0.29
TFF3Q07654 TMC6-216ENST00000590602 5268 ntAPPRIS P1 TSL 2 BASIC13.26□□□□□ -0.29
TFF3Q07654 BNIP3P13-201ENST00000599968 566 ntBASIC13.26□□□□□ -0.29
TFF3Q07654 AC008750.3-201ENST00000601148 437 ntTSL 5 BASIC13.26□□□□□ -0.29
TFF3Q07654 Metazoa_SRP.69-201ENST00000615730 281 ntBASIC13.26□□□□□ -0.29
TFF3Q07654 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC13.26□□□□□ -0.29
TFF3Q07654 AC100757.4-201ENST00000626934 759 ntBASIC13.26□□□□□ -0.29
TFF3Q07654 GSDMA-203ENST00000635792 1546 ntAPPRIS P1 TSL 5 BASIC13.26□□□□□ -0.29
TFF3Q07654 AC013268.4-201ENST00000637413 2228 ntBASIC13.26□□□□□ -0.29
TFF3Q07654 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
TFF3Q07654 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
TFF3Q07654 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC13.26□□□□□ -0.29
TFF3Q07654 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
TFF3Q07654 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
TFF3Q07654 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
TFF3Q07654 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
TFF3Q07654 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
TFF3Q07654 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
TFF3Q07654 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
TFF3Q07654 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC13.25□□□□□ -0.29
TFF3Q07654 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
TFF3Q07654 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC13.25□□□□□ -0.29
TFF3Q07654 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
TFF3Q07654 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
TFF3Q07654 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC13.25□□□□□ -0.29
TFF3Q07654 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC13.25□□□□□ -0.29
TFF3Q07654 EVPL-201ENST00000301607 6614 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
TFF3Q07654 TMEM256-201ENST00000302422 486 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
TFF3Q07654 RANBP1-201ENST00000331821 837 ntAPPRIS P3 TSL 1 (best) BASIC13.25□□□□□ -0.29
TFF3Q07654 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
TFF3Q07654 KRTAP20-4-201ENST00000382828 224 ntAPPRIS P1 BASIC13.25□□□□□ -0.29
TFF3Q07654 LINC01006-204ENST00000435354 545 ntTSL 2 BASIC13.25□□□□□ -0.29
TFF3Q07654 MSRA-203ENST00000441698 788 ntTSL 2 BASIC13.25□□□□□ -0.29
TFF3Q07654 LINC00642-202ENST00000442515 670 ntTSL 3 BASIC13.25□□□□□ -0.29
TFF3Q07654 AC008438.1-201ENST00000507521 549 ntTSL 2 BASIC13.25□□□□□ -0.29
TFF3Q07654 AC239802.2-201ENST00000532137 554 ntTSL 4 BASIC13.25□□□□□ -0.29
TFF3Q07654 AC013355.1-201ENST00000562625 723 ntBASIC13.25□□□□□ -0.29
TFF3Q07654 MIR3907-201ENST00000579424 151 ntBASIC13.25□□□□□ -0.29
TFF3Q07654 FBXL12-204ENST00000586469 544 ntTSL 2 BASIC13.25□□□□□ -0.29
TFF3Q07654 GEMIN7-204ENST00000591747 576 ntAPPRIS P1 TSL 5 BASIC13.25□□□□□ -0.29
TFF3Q07654 AC004466.1-201ENST00000599515 1080 ntBASIC13.25□□□□□ -0.29
TFF3Q07654 AC026740.1-201ENST00000607068 791 ntBASIC13.25□□□□□ -0.29
TFF3Q07654 AC091544.8-201ENST00000619490 361 ntBASIC13.25□□□□□ -0.29
TFF3Q07654 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC13.25□□□□□ -0.29
TFF3Q07654 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
TFF3Q07654 FNDC1-201ENST00000297267 6552 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
TFF3Q07654 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC13.25□□□□□ -0.29
TFF3Q07654 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
TFF3Q07654 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC13.25□□□□□ -0.29
TFF3Q07654 RPA3-201ENST00000223129 2020 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
TFF3Q07654 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
TFF3Q07654 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC13.25□□□□□ -0.29
TFF3Q07654 CDH7-203ENST00000536984 3766 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
TFF3Q07654 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC13.25□□□□□ -0.29
TFF3Q07654 AC055811.4-201ENST00000624039 1754 ntBASIC13.25□□□□□ -0.29
TFF3Q07654 PRKX-201ENST00000262848 6031 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
TFF3Q07654 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC13.24□□□□□ -0.29
TFF3Q07654 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC13.24□□□□□ -0.29
TFF3Q07654 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
TFF3Q07654 AL359915.2-205ENST00000418015 1529 ntTSL 2 BASIC13.24□□□□□ -0.29
TFF3Q07654 EHF-212ENST00000533754 1501 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
TFF3Q07654 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC13.24□□□□□ -0.29
TFF3Q07654 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC13.24□□□□□ -0.29
TFF3Q07654 AC007728.2-201ENST00000563315 2296 ntTSL 5 BASIC13.24□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 81.8 ms