Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 MYL12B-201ENST00000237500 1210 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HMGCS2P54868 NUP210P1-201ENST00000357061 876 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
HMGCS2P54868 TOMM7-201ENST00000358435 778 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
HMGCS2P54868 AC239868.1-201ENST00000369385 493 ntBASIC17.25■□□□□ 0.35
HMGCS2P54868 ARMC12-203ENST00000373869 1111 ntTSL 2 BASIC17.25■□□□□ 0.35
HMGCS2P54868 CALCA-203ENST00000396372 581 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
HMGCS2P54868 AC069277.1-202ENST00000414438 761 ntTSL 3 BASIC17.25■□□□□ 0.35
HMGCS2P54868 PEX13-203ENST00000414712 1014 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
HMGCS2P54868 LINC01006-202ENST00000418309 640 ntTSL 3 BASIC17.25■□□□□ 0.35
HMGCS2P54868 HCFC1-AS1-201ENST00000438219 350 ntTSL 3 BASIC17.25■□□□□ 0.35
HMGCS2P54868 ALG3P1-201ENST00000508806 1114 ntBASIC17.25■□□□□ 0.35
HMGCS2P54868 HOXA10-AS-202ENST00000519935 1161 ntTSL 3 BASIC17.25■□□□□ 0.35
HMGCS2P54868 NAPSB-201ENST00000525179 678 ntTSL 3 BASIC17.25■□□□□ 0.35
HMGCS2P54868 AC005779.2-201ENST00000593083 550 ntAPPRIS P1 TSL 4 BASIC17.25■□□□□ 0.35
HMGCS2P54868 HIST2H2BB-202ENST00000609585 563 ntTSL 2 BASIC17.25■□□□□ 0.35
HMGCS2P54868 NR2F2-AS1-215ENST00000620029 1223 ntTSL 5 BASIC17.25■□□□□ 0.35
HMGCS2P54868 AC027601.3-201ENST00000622907 509 ntBASIC17.25■□□□□ 0.35
HMGCS2P54868 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
HMGCS2P54868 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
HMGCS2P54868 ARF6-201ENST00000298316 3865 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HMGCS2P54868 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HMGCS2P54868 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HMGCS2P54868 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC17.25■□□□□ 0.35
HMGCS2P54868 ID2-203ENST00000396290 1362 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HMGCS2P54868 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HMGCS2P54868 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
HMGCS2P54868 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC17.25■□□□□ 0.35
HMGCS2P54868 UCN2-201ENST00000273610 1481 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
HMGCS2P54868 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
HMGCS2P54868 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
HMGCS2P54868 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
HMGCS2P54868 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
HMGCS2P54868 C18orf15-201ENST00000623680 2534 ntBASIC17.24■□□□□ 0.35
HMGCS2P54868 DOC2GP-204ENST00000639052 2548 ntBASIC17.24■□□□□ 0.35
HMGCS2P54868 AC099398.1-201ENST00000567919 2776 ntBASIC17.24■□□□□ 0.35
HMGCS2P54868 PDE9A-208ENST00000398225 1963 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
HMGCS2P54868 AC023024.2-201ENST00000623561 1993 ntBASIC17.24■□□□□ 0.35
HMGCS2P54868 LINC00680-205ENST00000450081 1593 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
HMGCS2P54868 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
HMGCS2P54868 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC17.24■□□□□ 0.35
HMGCS2P54868 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC17.24■□□□□ 0.35
HMGCS2P54868 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
HMGCS2P54868 SLC6A9-203ENST00000372306 1926 ntTSL 2 BASIC17.24■□□□□ 0.35
HMGCS2P54868 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
HMGCS2P54868 FBN2-205ENST00000508989 4987 ntTSL 2 BASIC17.24■□□□□ 0.35
HMGCS2P54868 OR9I1-201ENST00000302610 945 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
HMGCS2P54868 VCPKMT-201ENST00000395859 795 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
HMGCS2P54868 FAM3B-203ENST00000398647 864 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
HMGCS2P54868 FAM3B-204ENST00000398652 1125 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
HMGCS2P54868 APOL3-207ENST00000424878 1240 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
HMGCS2P54868 AL157407.1-201ENST00000435784 904 ntBASIC17.24■□□□□ 0.35
HMGCS2P54868 FBXO24-204ENST00000465843 957 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
HMGCS2P54868 KLF3-AS1-204ENST00000505240 567 ntTSL 4 BASIC17.24■□□□□ 0.35
HMGCS2P54868 POU5F1P2-201ENST00000521750 823 ntBASIC17.24■□□□□ 0.35
HMGCS2P54868 SIRT3-210ENST00000529382 1225 ntTSL 2 BASIC17.24■□□□□ 0.35
HMGCS2P54868 LINC01475-201ENST00000548010 766 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
HMGCS2P54868 AL031282.1-201ENST00000577672 409 ntTSL 3 BASIC17.24■□□□□ 0.35
HMGCS2P54868 AC008736.2-201ENST00000587554 516 ntTSL 2 BASIC17.24■□□□□ 0.35
HMGCS2P54868 AL157813.1-201ENST00000612996 587 ntBASIC17.24■□□□□ 0.35
HMGCS2P54868 AP003419.4-201ENST00000616071 517 ntBASIC17.24■□□□□ 0.35
HMGCS2P54868 AC103691.2-201ENST00000618824 433 ntBASIC17.24■□□□□ 0.35
HMGCS2P54868 KLF3-AS1-207ENST00000620339 558 ntTSL 4 BASIC17.24■□□□□ 0.35
HMGCS2P54868 AC007718.1-201ENST00000621078 280 ntBASIC17.24■□□□□ 0.35
HMGCS2P54868 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
HMGCS2P54868 STAT5A-201ENST00000345506 4301 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
HMGCS2P54868 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC17.24■□□□□ 0.35
HMGCS2P54868 CERS3-202ENST00000394113 2045 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
HMGCS2P54868 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
HMGCS2P54868 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
HMGCS2P54868 NIT1-203ENST00000368009 1362 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
HMGCS2P54868 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
HMGCS2P54868 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
HMGCS2P54868 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
HMGCS2P54868 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC17.24■□□□□ 0.35
HMGCS2P54868 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC17.24■□□□□ 0.35
HMGCS2P54868 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
HMGCS2P54868 GPN3-201ENST00000228827 1468 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
HMGCS2P54868 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC17.24■□□□□ 0.35
HMGCS2P54868 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
HMGCS2P54868 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
HMGCS2P54868 PEG3-206ENST00000598410 5304 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
HMGCS2P54868 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HMGCS2P54868 DNASE1L2-204ENST00000567494 1301 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
HMGCS2P54868 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HMGCS2P54868 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC17.23■□□□□ 0.35
HMGCS2P54868 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HMGCS2P54868 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC17.23■□□□□ 0.35
HMGCS2P54868 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
HMGCS2P54868 AC112693.3-201ENST00000624819 1983 ntBASIC17.23■□□□□ 0.35
HMGCS2P54868 CHIA-204ENST00000369740 1625 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HMGCS2P54868 RPS9-201ENST00000302907 829 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HMGCS2P54868 GSG1L-201ENST00000380897 1173 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
HMGCS2P54868 AC026316.1-201ENST00000398900 414 ntBASIC17.23■□□□□ 0.35
HMGCS2P54868 TREML1-202ENST00000426005 981 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
HMGCS2P54868 NOC2LP1-201ENST00000450578 752 ntBASIC17.23■□□□□ 0.35
HMGCS2P54868 SZRD1-203ENST00000471507 892 ntAPPRIS ALT1 TSL 2 BASIC17.23■□□□□ 0.35
HMGCS2P54868 CCNC-217ENST00000523985 958 ntTSL 2 BASIC17.23■□□□□ 0.35
HMGCS2P54868 MBP-227ENST00000526111 581 ntTSL 4 BASIC17.23■□□□□ 0.35
HMGCS2P54868 NEU3-205ENST00000531619 582 ntTSL 5 BASIC17.23■□□□□ 0.35
HMGCS2P54868 AP000911.1-202ENST00000532706 543 ntTSL 4 BASIC17.23■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 40.7 ms