Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CTCFP49711 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC17.38■□□□□ 0.37
CTCFP49711 LINC01667-202ENST00000623919 1422 ntTSL 5 BASIC17.38■□□□□ 0.37
CTCFP49711 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CTCFP49711 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC17.38■□□□□ 0.37
CTCFP49711 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CTCFP49711 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC17.37■□□□□ 0.37
CTCFP49711 BANP-204ENST00000393208 2283 ntTSL 2 BASIC17.37■□□□□ 0.37
CTCFP49711 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC17.37■□□□□ 0.37
CTCFP49711 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC17.37■□□□□ 0.37
CTCFP49711 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
CTCFP49711 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
CTCFP49711 ODF3L1-201ENST00000332145 1196 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CTCFP49711 MIR557-201ENST00000385239 98 ntBASIC17.37■□□□□ 0.37
CTCFP49711 Z95624.1-201ENST00000413528 628 ntTSL 5 BASIC17.37■□□□□ 0.37
CTCFP49711 AC156455.1-203ENST00000423999 893 ntTSL 2 BASIC17.37■□□□□ 0.37
CTCFP49711 HLA-DQB2-232ENST00000437316 1214 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
CTCFP49711 AC012441.2-201ENST00000444843 739 ntBASIC17.37■□□□□ 0.37
CTCFP49711 AC022616.1-201ENST00000518688 554 ntBASIC17.37■□□□□ 0.37
CTCFP49711 AP000911.2-201ENST00000534330 502 ntBASIC17.37■□□□□ 0.37
CTCFP49711 AC079949.1-201ENST00000541419 505 ntTSL 3 BASIC17.37■□□□□ 0.37
CTCFP49711 PMEL-214ENST00000550447 901 ntTSL 3 BASIC17.37■□□□□ 0.37
CTCFP49711 ACTN1-AS1-202ENST00000553961 599 ntTSL 4 BASIC17.37■□□□□ 0.37
CTCFP49711 AL590644.3-201ENST00000635428 1228 ntTSL 5 BASIC17.37■□□□□ 0.37
CTCFP49711 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
CTCFP49711 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CTCFP49711 CES1-202ENST00000361503 1835 ntAPPRIS ALT1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CTCFP49711 LINC00334-203ENST00000638500 1377 ntTSL 5 BASIC17.37■□□□□ 0.37
CTCFP49711 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC17.37■□□□□ 0.37
CTCFP49711 ALG11-203ENST00000523764 1404 ntTSL 2 BASIC17.37■□□□□ 0.37
CTCFP49711 TAOK2-203ENST00000416441 4780 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CTCFP49711 ZNF644-201ENST00000337393 5763 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CTCFP49711 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CTCFP49711 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC17.37■□□□□ 0.37
CTCFP49711 SUMO1-203ENST00000392246 1536 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CTCFP49711 OARD1-203ENST00000463088 1515 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
CTCFP49711 BACE1-211ENST00000528053 4083 ntTSL 5 BASIC17.37■□□□□ 0.37
CTCFP49711 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
CTCFP49711 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC17.36■□□□□ 0.37
CTCFP49711 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
CTCFP49711 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CTCFP49711 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
CTCFP49711 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC17.36■□□□□ 0.37
CTCFP49711 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
CTCFP49711 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CTCFP49711 AC023824.1-201ENST00000562945 2975 ntBASIC17.36■□□□□ 0.37
CTCFP49711 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
CTCFP49711 C1QB-201ENST00000314933 1044 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CTCFP49711 OR4S1-201ENST00000319988 930 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
CTCFP49711 NCR3-202ENST00000376071 541 ntTSL 5 BASIC17.36■□□□□ 0.37
CTCFP49711 AL807761.2-201ENST00000422849 729 ntBASIC17.36■□□□□ 0.37
CTCFP49711 AC078875.1-201ENST00000431907 724 ntBASIC17.36■□□□□ 0.37
CTCFP49711 AL135901.1-201ENST00000451812 333 ntBASIC17.36■□□□□ 0.37
CTCFP49711 EIF5A2-205ENST00000487522 565 ntTSL 3 BASIC17.36■□□□□ 0.37
CTCFP49711 TPD52L1-208ENST00000528193 789 ntTSL 5 BASIC17.36■□□□□ 0.37
CTCFP49711 FXYD6-208ENST00000529335 708 ntTSL 3 BASIC17.36■□□□□ 0.37
CTCFP49711 PIGT-208ENST00000545755 1158 ntTSL 5 BASIC17.36■□□□□ 0.37
CTCFP49711 AF111169.4-201ENST00000556368 749 ntTSL 2 BASIC17.36■□□□□ 0.37
CTCFP49711 ABHD17AP9-201ENST00000561925 548 ntBASIC17.36■□□□□ 0.37
CTCFP49711 SELENOW-202ENST00000593892 550 ntAPPRIS P1 TSL 3 BASIC17.36■□□□□ 0.37
CTCFP49711 KRTAP10-4-203ENST00000622352 1244 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
CTCFP49711 AL603764.1-201ENST00000636452 321 ntBASIC17.36■□□□□ 0.37
CTCFP49711 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
CTCFP49711 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC17.36■□□□□ 0.37
CTCFP49711 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC17.36■□□□□ 0.37
CTCFP49711 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
CTCFP49711 UBL7-201ENST00000361351 1360 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
CTCFP49711 CALCOCO2-211ENST00000508679 1396 ntTSL 2 BASIC17.36■□□□□ 0.37
CTCFP49711 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CTCFP49711 SVOPL-201ENST00000288513 1413 ntTSL 2 BASIC17.36■□□□□ 0.37
CTCFP49711 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC17.36■□□□□ 0.37
CTCFP49711 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CTCFP49711 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CTCFP49711 GCK-209ENST00000616242 2260 ntTSL 5 BASIC17.36■□□□□ 0.37
CTCFP49711 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC17.36■□□□□ 0.37
CTCFP49711 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
CTCFP49711 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CTCFP49711 EPB41L3-202ENST00000342933 4270 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
CTCFP49711 SHC1P1-201ENST00000425230 1745 ntBASIC17.35■□□□□ 0.37
CTCFP49711 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CTCFP49711 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CTCFP49711 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
CTCFP49711 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CTCFP49711 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CTCFP49711 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC17.35■□□□□ 0.37
CTCFP49711 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC17.35■□□□□ 0.37
CTCFP49711 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
CTCFP49711 FRMD6-AS1-201ENST00000617151 2229 ntBASIC17.35■□□□□ 0.37
CTCFP49711 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
CTCFP49711 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC17.35■□□□□ 0.37
CTCFP49711 MT1E-202ENST00000330439 729 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CTCFP49711 MAGOH-202ENST00000371470 756 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CTCFP49711 SPIN2B-203ENST00000374910 725 ntTSL 3 BASIC17.35■□□□□ 0.37
CTCFP49711 AK6-201ENST00000380818 1183 ntTSL 2 BASIC17.35■□□□□ 0.37
CTCFP49711 IGLC1-201ENST00000390321 460 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
CTCFP49711 RPA3-202ENST00000396682 847 ntAPPRIS P1 TSL 3 BASIC17.35■□□□□ 0.37
CTCFP49711 AC097059.1-201ENST00000413103 885 ntTSL 5 BASIC17.35■□□□□ 0.37
CTCFP49711 KLF3-AS1-204ENST00000505240 567 ntTSL 4 BASIC17.35■□□□□ 0.37
CTCFP49711 CHCHD7-211ENST00000521831 573 ntTSL 2 BASIC17.35■□□□□ 0.37
CTCFP49711 LZTS1-AS1-201ENST00000523103 892 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms