Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC14.29□□□□□ -0.12
SOX3P41225 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC14.29□□□□□ -0.12
SOX3P41225 KRT20-201ENST00000167588 1737 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
SOX3P41225 NRBF2-201ENST00000277746 1853 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
SOX3P41225 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
SOX3P41225 APBB1-217ENST00000608645 1925 ntTSL 5 BASIC14.29□□□□□ -0.12
SOX3P41225 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
SOX3P41225 OPA1-204ENST00000361828 6381 ntAPPRIS ALT1 TSL 5 BASIC14.29□□□□□ -0.12
SOX3P41225 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC14.29□□□□□ -0.12
SOX3P41225 CYP26A1-202ENST00000371531 2245 ntTSL 2 BASIC14.29□□□□□ -0.12
SOX3P41225 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
SOX3P41225 AKAP1-201ENST00000314126 2380 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
SOX3P41225 MED20-201ENST00000265350 2438 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
SOX3P41225 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC14.29□□□□□ -0.12
SOX3P41225 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC14.28□□□□□ -0.12
SOX3P41225 PAK4-208ENST00000599386 5735 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
SOX3P41225 OPCML-IT1-201ENST00000533859 2936 ntTSL 2 BASIC14.28□□□□□ -0.12
SOX3P41225 CEP170B-204ENST00000556508 6683 ntTSL 5 BASIC14.28□□□□□ -0.12
SOX3P41225 RNF182-208ENST00000544682 3495 ntAPPRIS P1 TSL 4 BASIC14.28□□□□□ -0.12
SOX3P41225 PPP1R26P4-201ENST00000619065 3527 ntBASIC14.28□□□□□ -0.12
SOX3P41225 TMTC1-207ENST00000552618 3915 ntTSL 5 BASIC14.28□□□□□ -0.12
SOX3P41225 PEX26-205ENST00000610387 3924 ntTSL 5 BASIC14.28□□□□□ -0.12
SOX3P41225 ZEB2-225ENST00000558170 4012 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
SOX3P41225 COG8-206ENST00000306875 4247 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
SOX3P41225 SLC38A10-202ENST00000374759 4300 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
SOX3P41225 GRM5-205ENST00000455756 7927 ntAPPRIS P3 TSL 2 BASIC14.28□□□□□ -0.12
SOX3P41225 ALG5-201ENST00000239891 1154 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
SOX3P41225 SYP-201ENST00000263233 2498 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
SOX3P41225 TFE3-201ENST00000315869 3415 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
SOX3P41225 ODF3-201ENST00000325113 1307 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
SOX3P41225 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC14.28□□□□□ -0.12
SOX3P41225 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC14.28□□□□□ -0.12
SOX3P41225 SSR4-204ENST00000370087 745 ntAPPRIS P1 TSL 3 BASIC14.28□□□□□ -0.12
SOX3P41225 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC14.28□□□□□ -0.12
SOX3P41225 GK-202ENST00000378941 458 ntTSL 3 BASIC14.28□□□□□ -0.12
SOX3P41225 C1orf159-202ENST00000379320 2324 ntAPPRIS ALT2 TSL 2 BASIC14.28□□□□□ -0.12
SOX3P41225 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
SOX3P41225 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
SOX3P41225 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC14.28□□□□□ -0.12
SOX3P41225 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC14.28□□□□□ -0.12
SOX3P41225 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC14.28□□□□□ -0.12
SOX3P41225 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
SOX3P41225 ARHGEF26-AS1-204ENST00000491862 2598 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
SOX3P41225 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC14.28□□□□□ -0.12
SOX3P41225 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
SOX3P41225 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
SOX3P41225 NXF1-213ENST00000532297 2795 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
SOX3P41225 PUDP-206ENST00000540122 825 ntTSL 2 BASIC14.28□□□□□ -0.12
SOX3P41225 ENPP7P5-201ENST00000541031 1031 ntBASIC14.28□□□□□ -0.12
SOX3P41225 LINC00928-204ENST00000561201 1123 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
SOX3P41225 IL21R-AS1-201ENST00000563191 2615 ntTSL 2 BASIC14.28□□□□□ -0.12
SOX3P41225 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
SOX3P41225 NAA60-229ENST00000575076 2531 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
SOX3P41225 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC14.28□□□□□ -0.12
SOX3P41225 AC079336.5-201ENST00000581360 2480 ntTSL 2 BASIC14.28□□□□□ -0.12
SOX3P41225 AC008735.3-201ENST00000596646 500 ntBASIC14.28□□□□□ -0.12
SOX3P41225 AC025181.2-201ENST00000606994 802 ntBASIC14.28□□□□□ -0.12
SOX3P41225 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
SOX3P41225 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC14.28□□□□□ -0.12
SOX3P41225 ADAMTS15-201ENST00000299164 5673 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
SOX3P41225 PTPRA-201ENST00000216877 3725 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
SOX3P41225 MYLK3-201ENST00000394809 6911 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
SOX3P41225 PVR-202ENST00000344956 3166 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
SOX3P41225 FGD2-201ENST00000274963 3046 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
SOX3P41225 RASA4-201ENST00000262940 5605 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
SOX3P41225 LPO-210ENST00000582328 2680 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
SOX3P41225 SLC22A7-202ENST00000372585 2555 ntAPPRIS P4 TSL 5 BASIC14.28□□□□□ -0.12
SOX3P41225 MEGF10-206ENST00000508365 2365 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
SOX3P41225 AGAP4-208ENST00000618171 2387 ntTSL 5 BASIC14.27□□□□□ -0.12
SOX3P41225 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
SOX3P41225 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC14.27□□□□□ -0.12
SOX3P41225 LIN9-201ENST00000328205 3567 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
SOX3P41225 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
SOX3P41225 ZNF365-207ENST00000410046 3379 ntTSL 2 BASIC14.27□□□□□ -0.12
SOX3P41225 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.12
SOX3P41225 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
SOX3P41225 AMT-224ENST00000635808 1610 ntTSL 5 BASIC14.27□□□□□ -0.12
SOX3P41225 AC084364.1-201ENST00000551967 1556 ntBASIC14.27□□□□□ -0.12
SOX3P41225 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
SOX3P41225 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
SOX3P41225 WSCD1-201ENST00000317744 5819 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
SOX3P41225 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
SOX3P41225 SLC2A13-201ENST00000280871 7003 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
SOX3P41225 FLI1-205ENST00000527786 4127 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
SOX3P41225 CTXND1-201ENST00000560778 6890 ntAPPRIS P1 TSL 3 BASIC14.27□□□□□ -0.12
SOX3P41225 CCP110-201ENST00000381396 5446 ntAPPRIS ALT1 TSL 1 (best) BASIC14.27□□□□□ -0.12
SOX3P41225 AC006504.5-203ENST00000590628 1335 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
SOX3P41225 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
SOX3P41225 CAVIN1-201ENST00000357037 3828 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
SOX3P41225 APOA1-205ENST00000375329 927 ntTSL 2 BASIC14.27□□□□□ -0.13
SOX3P41225 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC14.27□□□□□ -0.13
SOX3P41225 SUN1-204ENST00000403868 978 ntTSL 2 BASIC14.27□□□□□ -0.13
SOX3P41225 TPM1-207ENST00000403994 1049 ntAPPRIS ALT1 TSL 1 (best) BASIC14.27□□□□□ -0.13
SOX3P41225 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
SOX3P41225 TDH-203ENST00000531764 1110 ntBASIC14.27□□□□□ -0.13
SOX3P41225 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC14.27□□□□□ -0.13
SOX3P41225 C12orf10-204ENST00000548632 988 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
SOX3P41225 EEF1AKMT3-204ENST00000551420 836 ntTSL 2 BASIC14.27□□□□□ -0.13
SOX3P41225 MIR5189-201ENST00000577370 114 ntBASIC14.27□□□□□ -0.13
SOX3P41225 AC015936.2-201ENST00000593177 259 ntBASIC14.27□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 46.8 ms