Protein–RNA interactions for Protein: P35244

RPA3, Replication protein A 14 kDa subunit, humanhuman

Predicted RBP Predictions only

Length 121 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPA3P35244 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC15.33■□□□□ 0.04
RPA3P35244 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC15.33■□□□□ 0.04
RPA3P35244 AL844908.2-201ENST00000609461 460 ntBASIC15.33■□□□□ 0.04
RPA3P35244 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC15.33■□□□□ 0.04
RPA3P35244 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
RPA3P35244 SDC1-201ENST00000254351 3147 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
RPA3P35244 KLF11-205ENST00000535335 4033 ntAPPRIS ALT2 TSL 2 BASIC15.33■□□□□ 0.04
RPA3P35244 SARM1-208ENST00000585482 10309 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
RPA3P35244 CTTN-202ENST00000346329 3272 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
RPA3P35244 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
RPA3P35244 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC15.33■□□□□ 0.04
RPA3P35244 ADAMTS14-202ENST00000373208 5269 ntAPPRIS P4 TSL 2 BASIC15.33■□□□□ 0.04
RPA3P35244 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
RPA3P35244 POLM-202ENST00000335195 2444 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
RPA3P35244 YTHDF2-201ENST00000373812 2925 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
RPA3P35244 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
RPA3P35244 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC15.33■□□□□ 0.04
RPA3P35244 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC15.33■□□□□ 0.04
RPA3P35244 MFSD11-211ENST00000588460 3612 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
RPA3P35244 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC15.32■□□□□ 0.04
RPA3P35244 ZNF664-202ENST00000392404 4262 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
RPA3P35244 AC010327.3-201ENST00000591665 1643 ntTSL 2 BASIC15.32■□□□□ 0.04
RPA3P35244 SOX21-AS1-201ENST00000438290 3287 ntTSL 2 BASIC15.32■□□□□ 0.04
RPA3P35244 ITPRIPL2-201ENST00000381440 7247 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
RPA3P35244 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC15.32■□□□□ 0.04
RPA3P35244 AC089987.1-201ENST00000551654 2209 ntBASIC15.32■□□□□ 0.04
RPA3P35244 CCDC32-201ENST00000358005 1704 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
RPA3P35244 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC15.32■□□□□ 0.04
RPA3P35244 ECE1-201ENST00000264205 2381 ntAPPRIS P4 TSL 1 (best) BASIC15.32■□□□□ 0.04
RPA3P35244 AL391244.1-206ENST00000447725 1843 ntTSL 5 BASIC15.32■□□□□ 0.04
RPA3P35244 PRAMEF25-202ENST00000619661 1840 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
RPA3P35244 RGMA-202ENST00000425933 3078 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
RPA3P35244 DYSF-201ENST00000258104 6796 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
RPA3P35244 DYSF-204ENST00000409582 6790 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
RPA3P35244 DYSF-210ENST00000413539 6769 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
RPA3P35244 DNAJC21-202ENST00000382021 6208 ntTSL 2 BASIC15.32■□□□□ 0.04
RPA3P35244 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC15.32■□□□□ 0.04
RPA3P35244 AC104457.1-201ENST00000401024 814 ntBASIC15.32■□□□□ 0.04
RPA3P35244 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC15.32■□□□□ 0.04
RPA3P35244 TSSK5P-201ENST00000423978 907 ntBASIC15.32■□□□□ 0.04
RPA3P35244 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC15.32■□□□□ 0.04
RPA3P35244 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
RPA3P35244 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC15.32■□□□□ 0.04
RPA3P35244 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC15.32■□□□□ 0.04
RPA3P35244 INGX-202ENST00000489074 768 ntBASIC15.32■□□□□ 0.04
RPA3P35244 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC15.32■□□□□ 0.04
RPA3P35244 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC15.32■□□□□ 0.04
RPA3P35244 SSH2-210ENST00000582084 560 ntTSL 3 BASIC15.32■□□□□ 0.04
RPA3P35244 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC15.32■□□□□ 0.04
RPA3P35244 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
RPA3P35244 AL109936.8-201ENST00000641772 604 ntBASIC15.32■□□□□ 0.04
RPA3P35244 IGDCC3-201ENST00000327987 4479 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
RPA3P35244 PDE8A-203ENST00000394553 3912 ntAPPRIS P4 TSL 1 (best) BASIC15.32■□□□□ 0.04
RPA3P35244 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
RPA3P35244 DPYSL4-201ENST00000338492 2729 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
RPA3P35244 RNASEH2B-202ENST00000422660 4830 ntTSL 5 BASIC15.32■□□□□ 0.04
RPA3P35244 AC011474.4-201ENST00000623523 2076 ntBASIC15.32■□□□□ 0.04
RPA3P35244 SELENON-203ENST00000374315 4212 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
RPA3P35244 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC15.32■□□□□ 0.04
RPA3P35244 ATP2B3-202ENST00000349466 4280 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
RPA3P35244 KCP-203ENST00000610776 5108 ntTSL 5 BASIC15.32■□□□□ 0.04
RPA3P35244 ZBTB45P1-201ENST00000452761 1456 ntBASIC15.32■□□□□ 0.04
RPA3P35244 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
RPA3P35244 SGK2-204ENST00000373100 2225 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
RPA3P35244 TRIM46-210ENST00000545012 2979 ntTSL 2 BASIC15.32■□□□□ 0.04
RPA3P35244 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
RPA3P35244 RNF166-210ENST00000568683 1768 ntTSL 3 BASIC15.31■□□□□ 0.04
RPA3P35244 PDE4A-209ENST00000592685 2707 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
RPA3P35244 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
RPA3P35244 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
RPA3P35244 PIK3R1-211ENST00000521381 7011 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
RPA3P35244 LTBP2-201ENST00000261978 8567 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
RPA3P35244 ZBED1-202ENST00000381222 4507 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
RPA3P35244 MST1P2-201ENST00000457982 2291 ntBASIC15.31■□□□□ 0.04
RPA3P35244 AC005252.3-201ENST00000623855 2258 ntBASIC15.31■□□□□ 0.04
RPA3P35244 PELP1-212ENST00000574876 3465 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
RPA3P35244 REPS1-221ENST00000626459 3665 ntTSL 5 BASIC15.31■□□□□ 0.04
RPA3P35244 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
RPA3P35244 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC15.31■□□□□ 0.04
RPA3P35244 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC15.31■□□□□ 0.04
RPA3P35244 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC15.31■□□□□ 0.04
RPA3P35244 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC15.31■□□□□ 0.04
RPA3P35244 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC15.31■□□□□ 0.04
RPA3P35244 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC15.31■□□□□ 0.04
RPA3P35244 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC15.31■□□□□ 0.04
RPA3P35244 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC15.31■□□□□ 0.04
RPA3P35244 AQP6-203ENST00000551733 849 ntTSL 3 BASIC15.31■□□□□ 0.04
RPA3P35244 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC15.31■□□□□ 0.04
RPA3P35244 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC15.31■□□□□ 0.04
RPA3P35244 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
RPA3P35244 AC025048.3-201ENST00000590609 569 ntBASIC15.31■□□□□ 0.04
RPA3P35244 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
RPA3P35244 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
RPA3P35244 AC005702.4-201ENST00000618393 416 ntBASIC15.31■□□□□ 0.04
RPA3P35244 MAP3K12-205ENST00000547488 2807 ntAPPRIS ALT2 TSL 2 BASIC15.31■□□□□ 0.04
RPA3P35244 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC15.31■□□□□ 0.04
RPA3P35244 OR10AC1-201ENST00000439431 2898 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
RPA3P35244 FBLN2-203ENST00000404922 4318 ntAPPRIS P4 TSL 5 BASIC15.31■□□□□ 0.04
RPA3P35244 ITGB2-203ENST00000355153 2913 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
RPA3P35244 DUSP18-204ENST00000403268 2920 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 53.5 ms