Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 TRAF1-201ENST00000373887 6324 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
MSX1P28360 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
MSX1P28360 REXO1L2P-201ENST00000425429 2069 ntBASIC13.89□□□□□ -0.19
MSX1P28360 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC13.89□□□□□ -0.19
MSX1P28360 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC13.89□□□□□ -0.19
MSX1P28360 CTBP1-209ENST00000510568 4250 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
MSX1P28360 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC13.89□□□□□ -0.19
MSX1P28360 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC13.89□□□□□ -0.19
MSX1P28360 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
MSX1P28360 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
MSX1P28360 MYO15B-237ENST00000642007 4893 ntBASIC13.89□□□□□ -0.19
MSX1P28360 EXOG-201ENST00000287675 2792 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
MSX1P28360 KDM2B-201ENST00000377069 5224 ntAPPRIS ALT2 TSL 2 BASIC13.88□□□□□ -0.19
MSX1P28360 CHL1-202ENST00000397491 5235 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
MSX1P28360 AQP6-204ENST00000615425 2245 ntAPPRIS P1 TSL 5 BASIC13.88□□□□□ -0.19
MSX1P28360 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
MSX1P28360 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC13.88□□□□□ -0.19
MSX1P28360 CAPN7-201ENST00000253693 4353 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
MSX1P28360 AQP1-201ENST00000311813 2913 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
MSX1P28360 TNFSF13-202ENST00000349228 2036 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
MSX1P28360 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
MSX1P28360 ANKRD44-203ENST00000409153 2724 ntTSL 2 BASIC13.88□□□□□ -0.19
MSX1P28360 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
MSX1P28360 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
MSX1P28360 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC13.88□□□□□ -0.19
MSX1P28360 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC13.88□□□□□ -0.19
MSX1P28360 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC13.88□□□□□ -0.19
MSX1P28360 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
MSX1P28360 LILRP1-201ENST00000444199 1370 ntBASIC13.88□□□□□ -0.19
MSX1P28360 CELP-203ENST00000624767 2414 ntTSL 5 BASIC13.88□□□□□ -0.19
MSX1P28360 ZNRD1-201ENST00000332435 864 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
MSX1P28360 APOBEC3H-201ENST00000348946 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
MSX1P28360 RNU1-114P-201ENST00000365297 166 ntBASIC13.88□□□□□ -0.19
MSX1P28360 SS18L1-202ENST00000370848 1238 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
MSX1P28360 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
MSX1P28360 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC13.88□□□□□ -0.19
MSX1P28360 AL139158.2-202ENST00000428151 573 ntTSL 3 BASIC13.88□□□□□ -0.19
MSX1P28360 HLA-K-203ENST00000430151 1046 ntBASIC13.88□□□□□ -0.19
MSX1P28360 RPL7P3-201ENST00000441388 714 ntBASIC13.88□□□□□ -0.19
MSX1P28360 BCRP2-202ENST00000447763 634 ntBASIC13.88□□□□□ -0.19
MSX1P28360 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
MSX1P28360 BCRP6-201ENST00000510112 632 ntBASIC13.88□□□□□ -0.19
MSX1P28360 BCRP7-201ENST00000511549 544 ntBASIC13.88□□□□□ -0.19
MSX1P28360 USB1-203ENST00000539737 1212 ntTSL 2 BASIC13.88□□□□□ -0.19
MSX1P28360 SCGB1C2-201ENST00000595228 478 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
MSX1P28360 AC084346.2-201ENST00000607097 949 ntBASIC13.88□□□□□ -0.19
MSX1P28360 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
MSX1P28360 CAMKK2-203ENST00000347034 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
MSX1P28360 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
MSX1P28360 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
MSX1P28360 LRRC59-203ENST00000576448 1531 ntBASIC13.88□□□□□ -0.19
MSX1P28360 CHD4-201ENST00000357008 6496 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
MSX1P28360 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC13.88□□□□□ -0.19
MSX1P28360 USE1-206ENST00000595101 1776 ntTSL 2 BASIC13.88□□□□□ -0.19
MSX1P28360 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC13.88□□□□□ -0.19
MSX1P28360 RCOR3-203ENST00000419091 2041 ntAPPRIS P1 TSL 2 BASIC13.88□□□□□ -0.19
MSX1P28360 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
MSX1P28360 OR2I1P-209ENST00000641730 5365 ntBASIC13.88□□□□□ -0.19
MSX1P28360 PLIN4-202ENST00000633942 6484 ntAPPRIS ALT2 TSL 5 BASIC13.88□□□□□ -0.19
MSX1P28360 KRT8P35-201ENST00000483942 1338 ntBASIC13.88□□□□□ -0.19
MSX1P28360 AC134312.5-201ENST00000568031 1313 ntBASIC13.88□□□□□ -0.19
MSX1P28360 KRTAP10-7-201ENST00000609664 1578 ntAPPRIS P1 BASIC13.88□□□□□ -0.19
MSX1P28360 RASGEF1C-206ENST00000522500 2055 ntTSL 2 BASIC13.87□□□□□ -0.19
MSX1P28360 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
MSX1P28360 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC13.87□□□□□ -0.19
MSX1P28360 CAMK2D-205ENST00000394524 5294 ntAPPRIS ALT1 TSL 2 BASIC13.87□□□□□ -0.19
MSX1P28360 ASCC3-207ENST00000522650 2828 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
MSX1P28360 S1PR2-201ENST00000590320 3582 ntAPPRIS P1 TSL 3 BASIC13.87□□□□□ -0.19
MSX1P28360 PCDHGB8P-201ENST00000502926 1973 ntBASIC13.87□□□□□ -0.19
MSX1P28360 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
MSX1P28360 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC13.87□□□□□ -0.19
MSX1P28360 CNTNAP3-202ENST00000358144 4885 ntTSL 5 BASIC13.87□□□□□ -0.19
MSX1P28360 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC13.87□□□□□ -0.19
MSX1P28360 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC13.87□□□□□ -0.19
MSX1P28360 NEDD1-213ENST00000557644 2367 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
MSX1P28360 AC020907.1-201ENST00000616460 1350 ntBASIC13.87□□□□□ -0.19
MSX1P28360 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
MSX1P28360 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC13.87□□□□□ -0.19
MSX1P28360 PRKD2-206ENST00000595515 3012 ntTSL 2 BASIC13.87□□□□□ -0.19
MSX1P28360 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
MSX1P28360 LINC01270-201ENST00000371639 2281 ntTSL 2 BASIC13.87□□□□□ -0.19
MSX1P28360 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC13.87□□□□□ -0.19
MSX1P28360 HSD17B6-201ENST00000322165 1512 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
MSX1P28360 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC13.87□□□□□ -0.19
MSX1P28360 CARTPT-201ENST00000296777 915 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
MSX1P28360 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC13.87□□□□□ -0.19
MSX1P28360 PLAC9-201ENST00000372263 785 ntAPPRIS P2 TSL 1 (best) BASIC13.87□□□□□ -0.19
MSX1P28360 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC13.87□□□□□ -0.19
MSX1P28360 GZMB-202ENST00000382540 816 ntTSL 5 BASIC13.87□□□□□ -0.19
MSX1P28360 CRYAA-203ENST00000398133 600 ntTSL 3 BASIC13.87□□□□□ -0.19
MSX1P28360 P3H2-AS1-201ENST00000412203 730 ntTSL 5 BASIC13.87□□□□□ -0.19
MSX1P28360 AC007405.2-202ENST00000418106 540 ntTSL 4 BASIC13.87□□□□□ -0.19
MSX1P28360 RPL28-203ENST00000428193 573 ntTSL 2 BASIC13.87□□□□□ -0.19
MSX1P28360 MDM2-215ENST00000428863 1037 ntTSL 5 BASIC13.87□□□□□ -0.19
MSX1P28360 KCNQ1-AS1-201ENST00000440887 1084 ntTSL 5 BASIC13.87□□□□□ -0.19
MSX1P28360 AL355864.2-201ENST00000447420 863 ntBASIC13.87□□□□□ -0.19
MSX1P28360 AC106786.2-201ENST00000506859 561 ntTSL 4 BASIC13.87□□□□□ -0.19
MSX1P28360 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC13.87□□□□□ -0.19
MSX1P28360 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
MSX1P28360 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC13.87□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms